Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fhaC and tnp-IS3 are separated by 180 nucleotides tnp-IS3 and MCAODC_23385 overlap by 1 nucleotides MCAODC_23385 and MCAODC_23390 are separated by 593 nucleotides MCAODC_23390 and MCAODC_23395 are separated by 52 nucleotides
MCAODC_23375: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,406,098 to 1,407,144
fhaC
MCAODC_23380: tnp-IS3 - IS3 family transposase, at 1,407,325 to 1,407,651
tnp-IS3
MCAODC_23385: MCAODC_23385 - IS3 family transposase, at 1,407,651 to 1,408,538
_23385
MCAODC_23390: MCAODC_23390 - DUF4222 domain-containing protein, at 1,409,132 to 1,409,323
_23390
MCAODC_23395: MCAODC_23395 - Z1636-like protein, at 1,409,376 to 1,409,609
_23395
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1406.669 kb on + strand, within fhaC at 1406.669 kb on + strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.680 kb on - strand, within fhaC at 1406.730 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.826 kb on + strand, within fhaC at 1406.827 kb on - strand, within fhaC at 1406.841 kb on + strand, within fhaC at 1406.842 kb on - strand, within fhaC at 1406.842 kb on - strand, within fhaC at 1406.944 kb on - strand, within fhaC at 1407.121 kb on + strand at 1407.121 kb on + strand at 1407.133 kb on + strand at 1407.245 kb on + strand at 1407.256 kb on + strand at 1407.257 kb on - strand at 1408.687 kb on + strand at 1408.688 kb on - strand at 1408.878 kb on - strand at 1409.049 kb on + strand at 1409.090 kb on + strand at 1409.106 kb on - strand at 1409.273 kb on + strand, within MCAODC_23390 at 1409.274 kb on - strand, within MCAODC_23390 at 1409.274 kb on - strand, within MCAODC_23390 at 1409.358 kb on - strand at 1409.366 kb on - strand at 1409.366 kb on - strand at 1409.366 kb on - strand at 1409.378 kb on - strand at 1409.378 kb on - strand at 1409.461 kb on - strand, within MCAODC_23395 at 1409.462 kb on + strand, within MCAODC_23395 at 1409.533 kb on + strand, within MCAODC_23395
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,406,669 + fhaC MCAODC_23375 0.55 +0.7 1,406,669 + fhaC MCAODC_23375 0.55 +1.7 1,406,670 - fhaC MCAODC_23375 0.55 -0.3 1,406,670 - fhaC MCAODC_23375 0.55 -0.9 1,406,670 - fhaC MCAODC_23375 0.55 +0.8 1,406,680 - fhaC MCAODC_23375 0.56 -0.6 1,406,730 + fhaC MCAODC_23375 0.60 +0.4 1,406,795 + fhaC MCAODC_23375 0.67 -1.2 1,406,795 + fhaC MCAODC_23375 0.67 +0.7 1,406,795 + fhaC MCAODC_23375 0.67 -1.7 1,406,795 + fhaC MCAODC_23375 0.67 +0.8 1,406,795 + fhaC MCAODC_23375 0.67 -1.3 1,406,796 - fhaC MCAODC_23375 0.67 -1.6 1,406,796 - fhaC MCAODC_23375 0.67 +1.7 1,406,796 - fhaC MCAODC_23375 0.67 -1.5 1,406,826 + fhaC MCAODC_23375 0.70 +2.8 1,406,827 - fhaC MCAODC_23375 0.70 +1.7 1,406,841 + fhaC MCAODC_23375 0.71 +2.2 1,406,842 - fhaC MCAODC_23375 0.71 +0.1 1,406,842 - fhaC MCAODC_23375 0.71 +0.5 1,406,944 - fhaC MCAODC_23375 0.81 +1.2 1,407,121 + +1.1 1,407,121 + +0.1 1,407,133 + +1.1 1,407,245 + +0.7 1,407,256 + -0.5 1,407,257 - -0.1 1,408,687 + -0.6 1,408,688 - -0.1 1,408,878 - -1.0 1,409,049 + +0.3 1,409,090 + +0.1 1,409,106 - +1.7 1,409,273 + MCAODC_23390 0.73 +0.5 1,409,274 - MCAODC_23390 0.74 -1.8 1,409,274 - MCAODC_23390 0.74 -0.5 1,409,358 - +0.3 1,409,366 - -0.8 1,409,366 - +0.9 1,409,366 - +0.1 1,409,378 - +0.4 1,409,378 - +1.1 1,409,461 - MCAODC_23395 0.36 -0.1 1,409,462 + MCAODC_23395 0.37 -0.2 1,409,533 + MCAODC_23395 0.67 -0.8
Or see this region's nucleotide sequence