Strain Fitness in Escherichia coli ECRC101 around MCAODC_23050

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgA and flgM are separated by 75 nucleotidesflgM and flgN are separated by 4 nucleotidesflgN and murJ are separated by 39 nucleotides MCAODC_23040: flgA - flagellar basal body P-ring formation protein FlgA, at 1,350,472 to 1,351,131 flgA MCAODC_23045: flgM - anti-sigma-28 factor FlgM, at 1,351,207 to 1,351,500 flgM MCAODC_23050: flgN - flagella biosynthesis chaperone FlgN, at 1,351,505 to 1,351,921 flgN MCAODC_23055: murJ - murein biosynthesis integral membrane protein MurJ, at 1,351,961 to 1,353,496 murJ Position (kb) 1351 1352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1350.587 kb on + strand, within flgAat 1350.588 kb on - strand, within flgAat 1350.615 kb on + strand, within flgAat 1350.615 kb on + strand, within flgAat 1350.629 kb on + strand, within flgAat 1350.629 kb on + strand, within flgAat 1350.630 kb on - strand, within flgAat 1350.630 kb on - strand, within flgAat 1350.669 kb on + strand, within flgAat 1350.669 kb on + strand, within flgAat 1350.727 kb on + strand, within flgAat 1350.728 kb on - strand, within flgAat 1350.731 kb on + strand, within flgAat 1350.841 kb on - strand, within flgAat 1350.905 kb on + strand, within flgAat 1351.082 kb on + strandat 1351.083 kb on - strandat 1351.120 kb on - strandat 1351.122 kb on - strandat 1351.165 kb on + strandat 1351.165 kb on + strandat 1351.179 kb on + strandat 1351.202 kb on - strandat 1351.212 kb on + strandat 1351.212 kb on + strandat 1351.241 kb on + strand, within flgMat 1351.494 kb on + strandat 1351.498 kb on + strandat 1351.504 kb on + strandat 1351.504 kb on + strandat 1351.594 kb on + strand, within flgNat 1351.761 kb on + strand, within flgNat 1351.780 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.860 kb on + strand, within flgNat 1351.862 kb on + strand, within flgNat 1351.962 kb on + strandat 1351.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,350,587 + flgA MCAODC_23040 0.17 -0.8
1,350,588 - flgA MCAODC_23040 0.18 +0.3
1,350,615 + flgA MCAODC_23040 0.22 -0.4
1,350,615 + flgA MCAODC_23040 0.22 -0.4
1,350,629 + flgA MCAODC_23040 0.24 -0.0
1,350,629 + flgA MCAODC_23040 0.24 -0.3
1,350,630 - flgA MCAODC_23040 0.24 +0.3
1,350,630 - flgA MCAODC_23040 0.24 -0.0
1,350,669 + flgA MCAODC_23040 0.30 +0.7
1,350,669 + flgA MCAODC_23040 0.30 -0.7
1,350,727 + flgA MCAODC_23040 0.39 -0.3
1,350,728 - flgA MCAODC_23040 0.39 +1.7
1,350,731 + flgA MCAODC_23040 0.39 +0.7
1,350,841 - flgA MCAODC_23040 0.56 +3.2
1,350,905 + flgA MCAODC_23040 0.66 +1.7
1,351,082 + -0.5
1,351,083 - +1.7
1,351,120 - +0.7
1,351,122 - +1.2
1,351,165 + +0.9
1,351,165 + +0.6
1,351,179 + +0.7
1,351,202 - -0.5
1,351,212 + -1.2
1,351,212 + -1.4
1,351,241 + flgM MCAODC_23045 0.12 -0.3
1,351,494 + +1.2
1,351,498 + +0.9
1,351,504 + +3.7
1,351,504 + +1.7
1,351,594 + flgN MCAODC_23050 0.21 +0.1
1,351,761 + flgN MCAODC_23050 0.61 +0.4
1,351,780 + flgN MCAODC_23050 0.66 -1.7
1,351,860 + flgN MCAODC_23050 0.85 -1.3
1,351,860 + flgN MCAODC_23050 0.85 +0.1
1,351,860 + flgN MCAODC_23050 0.85 -0.3
1,351,860 + flgN MCAODC_23050 0.85 +0.6
1,351,860 + flgN MCAODC_23050 0.85 -0.9
1,351,860 + flgN MCAODC_23050 0.85 +0.4
1,351,860 + flgN MCAODC_23050 0.85 -1.3
1,351,862 + flgN MCAODC_23050 0.86 -0.7
1,351,962 + +0.1
1,351,963 - -2.0

Or see this region's nucleotide sequence