Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purU and Tyr_trna are separated by 159 nucleotides Tyr_trna and Tyr_trna are separated by 209 nucleotides Tyr_trna and narI are separated by 539 nucleotides
MCAODC_21690: purU - formyltetrahydrofolate deformylase, at 1,122,185 to 1,123,027
purU
MCAODC_21695: Tyr_trna - tRNA-Tyr(gta), at 1,123,187 to 1,123,271
_trna
MCAODC_21700: Tyr_trna - tRNA-Tyr(gta), at 1,123,481 to 1,123,565
_trna
MCAODC_21705: narI - respiratory nitrate reductase subunit gamma, at 1,124,105 to 1,124,782
narI
Position (kb) 1123
1124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1122.218 kb on - strand at 1122.250 kb on + strand at 1122.251 kb on - strand at 1122.254 kb on - strand at 1122.254 kb on - strand at 1122.266 kb on + strand at 1122.279 kb on + strand, within purU at 1122.280 kb on - strand, within purU at 1122.284 kb on - strand, within purU at 1122.358 kb on + strand, within purU at 1122.503 kb on + strand, within purU at 1122.504 kb on - strand, within purU at 1122.555 kb on + strand, within purU at 1122.581 kb on - strand, within purU at 1122.581 kb on - strand, within purU at 1122.582 kb on + strand, within purU at 1122.672 kb on - strand, within purU at 1122.689 kb on + strand, within purU at 1122.690 kb on - strand, within purU at 1122.691 kb on + strand, within purU at 1122.691 kb on + strand, within purU at 1122.702 kb on + strand, within purU at 1122.702 kb on + strand, within purU at 1122.840 kb on - strand, within purU at 1122.886 kb on + strand, within purU at 1122.901 kb on + strand, within purU at 1122.902 kb on - strand, within purU at 1122.905 kb on + strand, within purU at 1122.905 kb on + strand, within purU at 1122.919 kb on + strand, within purU at 1122.920 kb on - strand, within purU at 1122.957 kb on + strand at 1123.041 kb on + strand at 1123.041 kb on + strand at 1123.055 kb on + strand at 1123.132 kb on - strand at 1123.427 kb on + strand at 1123.789 kb on + strand at 1123.993 kb on + strand at 1123.994 kb on - strand at 1123.999 kb on - strand at 1124.010 kb on + strand at 1124.087 kb on - strand at 1124.107 kb on - strand at 1124.130 kb on + strand at 1124.135 kb on - strand at 1124.135 kb on - strand at 1124.135 kb on - strand at 1124.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,122,218 - -1.8 1,122,250 + +0.7 1,122,251 - -1.5 1,122,254 - +0.7 1,122,254 - +0.1 1,122,266 + -1.2 1,122,279 + purU MCAODC_21690 0.11 -0.2 1,122,280 - purU MCAODC_21690 0.11 -0.9 1,122,284 - purU MCAODC_21690 0.12 +0.7 1,122,358 + purU MCAODC_21690 0.21 -1.3 1,122,503 + purU MCAODC_21690 0.38 +0.7 1,122,504 - purU MCAODC_21690 0.38 +1.1 1,122,555 + purU MCAODC_21690 0.44 -1.1 1,122,581 - purU MCAODC_21690 0.47 +1.3 1,122,581 - purU MCAODC_21690 0.47 +1.0 1,122,582 + purU MCAODC_21690 0.47 +0.4 1,122,672 - purU MCAODC_21690 0.58 +0.1 1,122,689 + purU MCAODC_21690 0.60 -1.2 1,122,690 - purU MCAODC_21690 0.60 -0.9 1,122,691 + purU MCAODC_21690 0.60 +1.7 1,122,691 + purU MCAODC_21690 0.60 -3.3 1,122,702 + purU MCAODC_21690 0.61 +1.0 1,122,702 + purU MCAODC_21690 0.61 +1.3 1,122,840 - purU MCAODC_21690 0.78 +1.7 1,122,886 + purU MCAODC_21690 0.83 -0.3 1,122,901 + purU MCAODC_21690 0.85 -0.6 1,122,902 - purU MCAODC_21690 0.85 -1.1 1,122,905 + purU MCAODC_21690 0.85 -0.5 1,122,905 + purU MCAODC_21690 0.85 -0.0 1,122,919 + purU MCAODC_21690 0.87 +0.1 1,122,920 - purU MCAODC_21690 0.87 -0.5 1,122,957 + -1.0 1,123,041 + -0.0 1,123,041 + +0.1 1,123,055 + -0.3 1,123,132 - +1.7 1,123,427 + +1.1 1,123,789 + +0.7 1,123,993 + +1.2 1,123,994 - +0.7 1,123,999 - -2.3 1,124,010 + -1.6 1,124,087 - +1.5 1,124,107 - -1.0 1,124,130 + -0.4 1,124,135 - +0.6 1,124,135 - +1.6 1,124,135 - -1.1 1,124,146 - +0.4
Or see this region's nucleotide sequence