Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20320 and MCAODC_20325 are separated by 81 nucleotides MCAODC_20325 and yeeS are separated by 14 nucleotides yeeS and yeeT are separated by 62 nucleotides yeeT and cbtA are separated by 73 nucleotides
MCAODC_20320: MCAODC_20320 - DUF932 domain-containing protein, at 875,278 to 876,099
_20320
MCAODC_20325: MCAODC_20325 - restriction endonuclease, at 876,181 to 876,660
_20325
MCAODC_20330: yeeS - UPF0758 protein YeeS, at 876,675 to 877,151
yeeS
MCAODC_20335: yeeT - Uncharacterized protein YeeT, at 877,214 to 877,435
yeeT
MCAODC_20340: cbtA - type IV toxin-antitoxin system toxin CbtA, at 877,509 to 877,877
cbtA
Position (kb) 876
877 Strain fitness (log2 ratio) -1
0
1 at 875.303 kb on - strand at 875.318 kb on + strand at 875.363 kb on + strand, within MCAODC_20320 at 875.364 kb on - strand, within MCAODC_20320 at 875.416 kb on + strand, within MCAODC_20320 at 875.416 kb on + strand, within MCAODC_20320 at 875.430 kb on + strand, within MCAODC_20320 at 875.555 kb on + strand, within MCAODC_20320 at 875.615 kb on - strand, within MCAODC_20320 at 875.615 kb on - strand, within MCAODC_20320 at 875.633 kb on - strand, within MCAODC_20320 at 875.959 kb on - strand, within MCAODC_20320 at 876.222 kb on + strand at 876.468 kb on - strand, within MCAODC_20325 at 876.544 kb on + strand, within MCAODC_20325 at 876.544 kb on + strand, within MCAODC_20325 at 876.574 kb on + strand, within MCAODC_20325 at 876.575 kb on - strand, within MCAODC_20325 at 876.592 kb on + strand, within MCAODC_20325 at 877.186 kb on + strand at 877.404 kb on - strand, within yeeT at 877.404 kb on - strand, within yeeT at 877.469 kb on - strand at 877.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 875,303 - +1.6 875,318 + -0.4 875,363 + MCAODC_20320 0.10 -0.8 875,364 - MCAODC_20320 0.10 -1.7 875,416 + MCAODC_20320 0.17 -0.3 875,416 + MCAODC_20320 0.17 +0.8 875,430 + MCAODC_20320 0.18 -0.5 875,555 + MCAODC_20320 0.34 +0.4 875,615 - MCAODC_20320 0.41 +0.2 875,615 - MCAODC_20320 0.41 -0.9 875,633 - MCAODC_20320 0.43 -0.7 875,959 - MCAODC_20320 0.83 +1.1 876,222 + +1.2 876,468 - MCAODC_20325 0.60 +1.0 876,544 + MCAODC_20325 0.76 -0.8 876,544 + MCAODC_20325 0.76 -0.3 876,574 + MCAODC_20325 0.82 -1.5 876,575 - MCAODC_20325 0.82 -0.2 876,592 + MCAODC_20325 0.86 +1.7 877,186 + -0.7 877,404 - yeeT MCAODC_20335 0.86 -1.2 877,404 - yeeT MCAODC_20335 0.86 +1.2 877,469 - +0.7 877,469 - +0.5
Or see this region's nucleotide sequence