Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20295 and MCAODC_20300 overlap by 4 nucleotides MCAODC_20300 and MCAODC_20305 overlap by 4 nucleotides MCAODC_20305 and MCAODC_20310 are separated by 135 nucleotides MCAODC_20310 and MCAODC_20315 are separated by 15 nucleotides
MCAODC_20295: MCAODC_20295 - dGTPase, at 871,160 to 871,843
_20295
MCAODC_20300: MCAODC_20300 - chemotaxis protein, at 871,840 to 872,745
_20300
MCAODC_20305: MCAODC_20305 - phospholipase, at 872,742 to 873,812
_20305
MCAODC_20310: MCAODC_20310 - hypothetical protein, at 873,948 to 874,631
_20310
MCAODC_20315: MCAODC_20315 - hypothetical protein, at 874,647 to 875,057
_20315
Position (kb) 872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.981 kb on - strand at 873.982 kb on + strand at 874.026 kb on + strand, within MCAODC_20310 at 874.042 kb on + strand, within MCAODC_20310 at 874.235 kb on + strand, within MCAODC_20310 at 874.288 kb on - strand, within MCAODC_20310 at 874.296 kb on + strand, within MCAODC_20310 at 874.296 kb on + strand, within MCAODC_20310 at 874.314 kb on + strand, within MCAODC_20310 at 874.339 kb on + strand, within MCAODC_20310 at 874.339 kb on + strand, within MCAODC_20310 at 874.383 kb on - strand, within MCAODC_20310 at 874.428 kb on - strand, within MCAODC_20310 at 874.495 kb on - strand, within MCAODC_20310 at 874.495 kb on - strand, within MCAODC_20310 at 874.540 kb on + strand, within MCAODC_20310 at 874.611 kb on + strand at 874.615 kb on + strand at 874.630 kb on - strand at 874.720 kb on + strand, within MCAODC_20315 at 874.754 kb on + strand, within MCAODC_20315 at 874.754 kb on + strand, within MCAODC_20315
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 873,981 - -0.3 873,982 + +0.5 874,026 + MCAODC_20310 0.11 -1.7 874,042 + MCAODC_20310 0.14 -0.8 874,235 + MCAODC_20310 0.42 -0.9 874,288 - MCAODC_20310 0.50 +0.4 874,296 + MCAODC_20310 0.51 +0.3 874,296 + MCAODC_20310 0.51 +0.1 874,314 + MCAODC_20310 0.54 +0.7 874,339 + MCAODC_20310 0.57 -0.2 874,339 + MCAODC_20310 0.57 +0.1 874,383 - MCAODC_20310 0.64 +1.2 874,428 - MCAODC_20310 0.70 -0.7 874,495 - MCAODC_20310 0.80 -3.1 874,495 - MCAODC_20310 0.80 +0.9 874,540 + MCAODC_20310 0.87 -0.7 874,611 + +2.7 874,615 + -0.3 874,630 - -1.2 874,720 + MCAODC_20315 0.18 +0.8 874,754 + MCAODC_20315 0.26 -0.4 874,754 + MCAODC_20315 0.26 +0.7
Or see this region's nucleotide sequence