Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliG and fliH overlap by 8 nucleotides fliH and fliI overlap by 1 nucleotides fliI and fliJ are separated by 18 nucleotides fliJ and fliK overlap by 4 nucleotides
MCAODC_19685: fliG - flagellar motor switch protein FliG, at 768,635 to 769,630
fliG
MCAODC_19690: fliH - flagellar assembly protein FliH, at 769,623 to 770,309
fliH
MCAODC_19695: fliI - flagellum-specific ATP synthase FliI, at 770,309 to 771,682
fliI
MCAODC_19700: fliJ - flagella biosynthesis chaperone FliJ, at 771,701 to 772,144
fliJ
MCAODC_19705: fliK - flagellar hook length control protein FliK, at 772,141 to 773,268
fliK
Position (kb) 770
771
772 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 769.599 kb on + strand at 769.599 kb on + strand at 769.618 kb on + strand at 769.618 kb on + strand at 769.618 kb on + strand at 769.619 kb on - strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.622 kb on + strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.623 kb on - strand at 769.632 kb on - strand at 769.827 kb on - strand, within fliH at 769.943 kb on + strand, within fliH at 769.944 kb on - strand, within fliH at 769.962 kb on - strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.147 kb on + strand, within fliH at 770.165 kb on - strand, within fliH at 770.165 kb on - strand, within fliH at 770.307 kb on + strand at 770.307 kb on + strand at 770.658 kb on + strand, within fliI at 770.658 kb on + strand, within fliI at 770.658 kb on + strand, within fliI at 770.684 kb on - strand, within fliI at 770.764 kb on + strand, within fliI at 770.765 kb on - strand, within fliI at 770.819 kb on - strand, within fliI at 770.870 kb on - strand, within fliI at 771.062 kb on + strand, within fliI at 771.461 kb on + strand, within fliI at 771.846 kb on - strand, within fliJ at 771.868 kb on + strand, within fliJ at 771.905 kb on + strand, within fliJ at 771.906 kb on - strand, within fliJ at 771.941 kb on - strand, within fliJ at 772.251 kb on - strand at 772.267 kb on - strand, within fliK at 772.306 kb on - strand, within fliK at 772.342 kb on - strand, within fliK at 772.365 kb on + strand, within fliK at 772.365 kb on + strand, within fliK at 772.569 kb on + strand, within fliK at 772.570 kb on - strand, within fliK
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 769,599 + -0.7 769,599 + +1.1 769,618 + -0.4 769,618 + -0.3 769,618 + +0.6 769,619 - +0.7 769,622 + -0.5 769,622 + +1.1 769,622 + -1.9 769,622 + +0.7 769,622 + -0.1 769,622 + +1.1 769,622 + -0.2 769,623 - -0.9 769,623 - -0.7 769,623 - +1.0 769,623 - +1.7 769,623 - -1.3 769,623 - -1.7 769,632 - +0.1 769,827 - fliH MCAODC_19690 0.30 +0.7 769,943 + fliH MCAODC_19690 0.47 +0.3 769,944 - fliH MCAODC_19690 0.47 +3.0 769,962 - fliH MCAODC_19690 0.49 -0.3 770,147 + fliH MCAODC_19690 0.76 +0.1 770,147 + fliH MCAODC_19690 0.76 +1.2 770,147 + fliH MCAODC_19690 0.76 +0.1 770,147 + fliH MCAODC_19690 0.76 -0.7 770,165 - fliH MCAODC_19690 0.79 +2.1 770,165 - fliH MCAODC_19690 0.79 -1.1 770,307 + +0.7 770,307 + +0.4 770,658 + fliI MCAODC_19695 0.25 -0.8 770,658 + fliI MCAODC_19695 0.25 +0.3 770,658 + fliI MCAODC_19695 0.25 +1.1 770,684 - fliI MCAODC_19695 0.27 +2.2 770,764 + fliI MCAODC_19695 0.33 -0.3 770,765 - fliI MCAODC_19695 0.33 -1.7 770,819 - fliI MCAODC_19695 0.37 -0.8 770,870 - fliI MCAODC_19695 0.41 -1.5 771,062 + fliI MCAODC_19695 0.55 -0.9 771,461 + fliI MCAODC_19695 0.84 -0.4 771,846 - fliJ MCAODC_19700 0.33 +2.2 771,868 + fliJ MCAODC_19700 0.38 +1.0 771,905 + fliJ MCAODC_19700 0.46 -0.0 771,906 - fliJ MCAODC_19700 0.46 -0.5 771,941 - fliJ MCAODC_19700 0.54 +0.3 772,251 - -0.7 772,267 - fliK MCAODC_19705 0.11 -1.9 772,306 - fliK MCAODC_19705 0.15 +1.5 772,342 - fliK MCAODC_19705 0.18 -1.7 772,365 + fliK MCAODC_19705 0.20 -0.9 772,365 + fliK MCAODC_19705 0.20 +0.7 772,569 + fliK MCAODC_19705 0.38 +0.2 772,570 - fliK MCAODC_19705 0.38 +0.1
Or see this region's nucleotide sequence