Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynbC and ynbD overlap by 11 nucleotides ynbD and azoR are separated by 50 nucleotides azoR and hrpA are separated by 200 nucleotides
MCAODC_16190: ynbC - Uncharacterized protein YnbC, at 132,534 to 134,291
ynbC
MCAODC_16195: ynbD - Uncharacterized protein YnbD, at 134,281 to 135,597
ynbD
MCAODC_16200: azoR - FMN-dependent NADH-azoreductase, at 135,648 to 136,253
azoR
MCAODC_16205: hrpA - ATP-dependent RNA helicase HrpA, at 136,454 to 140,356
hrpA
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 133.308 kb on + strand, within ynbC at 133.381 kb on - strand, within ynbC at 133.596 kb on + strand, within ynbC at 133.622 kb on + strand, within ynbC at 133.795 kb on - strand, within ynbC at 133.795 kb on - strand, within ynbC at 133.976 kb on + strand, within ynbC at 134.001 kb on + strand, within ynbC at 134.085 kb on + strand, within ynbC at 134.165 kb on - strand at 134.285 kb on + strand at 134.303 kb on + strand at 134.309 kb on + strand at 134.370 kb on - strand at 134.397 kb on + strand at 134.409 kb on + strand at 134.463 kb on + strand, within ynbD at 134.492 kb on + strand, within ynbD at 134.492 kb on + strand, within ynbD at 134.492 kb on + strand, within ynbD at 134.517 kb on + strand, within ynbD at 134.556 kb on + strand, within ynbD at 134.683 kb on + strand, within ynbD at 134.686 kb on - strand, within ynbD at 134.766 kb on + strand, within ynbD at 134.832 kb on + strand, within ynbD at 134.859 kb on - strand, within ynbD at 134.862 kb on + strand, within ynbD at 134.863 kb on - strand, within ynbD at 134.863 kb on - strand, within ynbD at 134.863 kb on - strand, within ynbD at 134.863 kb on - strand, within ynbD at 134.936 kb on + strand, within ynbD at 134.936 kb on + strand, within ynbD at 134.947 kb on + strand, within ynbD at 134.947 kb on + strand, within ynbD at 134.947 kb on + strand, within ynbD at 134.948 kb on - strand, within ynbD at 134.948 kb on - strand, within ynbD at 134.948 kb on - strand, within ynbD at 134.987 kb on + strand, within ynbD at 135.024 kb on - strand, within ynbD at 135.052 kb on - strand, within ynbD at 135.164 kb on + strand, within ynbD at 135.168 kb on + strand, within ynbD at 135.169 kb on - strand, within ynbD at 135.227 kb on + strand, within ynbD at 135.228 kb on - strand, within ynbD at 135.246 kb on + strand, within ynbD at 135.246 kb on + strand, within ynbD at 135.319 kb on + strand, within ynbD at 135.479 kb on + strand at 135.485 kb on - strand at 135.495 kb on + strand at 135.543 kb on + strand at 135.552 kb on + strand at 135.663 kb on - strand at 135.755 kb on + strand, within azoR at 135.787 kb on + strand, within azoR at 135.788 kb on - strand, within azoR at 135.842 kb on + strand, within azoR at 135.890 kb on + strand, within azoR at 135.903 kb on - strand, within azoR at 135.964 kb on + strand, within azoR at 135.964 kb on + strand, within azoR at 135.965 kb on - strand, within azoR at 136.242 kb on + strand at 136.271 kb on - strand at 136.308 kb on + strand at 136.331 kb on + strand at 136.395 kb on + strand at 136.400 kb on + strand at 136.400 kb on + strand at 136.401 kb on - strand at 136.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 133,308 + ynbC MCAODC_16190 0.44 +0.6 133,381 - ynbC MCAODC_16190 0.48 +1.5 133,596 + ynbC MCAODC_16190 0.60 -0.5 133,622 + ynbC MCAODC_16190 0.62 +0.8 133,795 - ynbC MCAODC_16190 0.72 +1.5 133,795 - ynbC MCAODC_16190 0.72 +1.5 133,976 + ynbC MCAODC_16190 0.82 -0.5 134,001 + ynbC MCAODC_16190 0.83 -0.7 134,085 + ynbC MCAODC_16190 0.88 -0.5 134,165 - +0.3 134,285 + +1.5 134,303 + +0.9 134,309 + +1.5 134,370 - -1.1 134,397 + -1.1 134,409 + +2.8 134,463 + ynbD MCAODC_16195 0.14 -1.6 134,492 + ynbD MCAODC_16195 0.16 +1.1 134,492 + ynbD MCAODC_16195 0.16 +0.8 134,492 + ynbD MCAODC_16195 0.16 +0.5 134,517 + ynbD MCAODC_16195 0.18 +1.5 134,556 + ynbD MCAODC_16195 0.21 +0.1 134,683 + ynbD MCAODC_16195 0.31 -1.8 134,686 - ynbD MCAODC_16195 0.31 -0.1 134,766 + ynbD MCAODC_16195 0.37 -0.8 134,832 + ynbD MCAODC_16195 0.42 +2.5 134,859 - ynbD MCAODC_16195 0.44 +0.5 134,862 + ynbD MCAODC_16195 0.44 -0.8 134,863 - ynbD MCAODC_16195 0.44 +0.5 134,863 - ynbD MCAODC_16195 0.44 +0.3 134,863 - ynbD MCAODC_16195 0.44 +1.1 134,863 - ynbD MCAODC_16195 0.44 -0.3 134,936 + ynbD MCAODC_16195 0.50 -0.5 134,936 + ynbD MCAODC_16195 0.50 -0.2 134,947 + ynbD MCAODC_16195 0.51 +1.9 134,947 + ynbD MCAODC_16195 0.51 -0.1 134,947 + ynbD MCAODC_16195 0.51 +0.2 134,948 - ynbD MCAODC_16195 0.51 -1.7 134,948 - ynbD MCAODC_16195 0.51 -0.9 134,948 - ynbD MCAODC_16195 0.51 +1.5 134,987 + ynbD MCAODC_16195 0.54 -0.4 135,024 - ynbD MCAODC_16195 0.56 -0.9 135,052 - ynbD MCAODC_16195 0.59 -0.7 135,164 + ynbD MCAODC_16195 0.67 -0.1 135,168 + ynbD MCAODC_16195 0.67 -0.9 135,169 - ynbD MCAODC_16195 0.67 -2.1 135,227 + ynbD MCAODC_16195 0.72 +0.5 135,228 - ynbD MCAODC_16195 0.72 +1.5 135,246 + ynbD MCAODC_16195 0.73 -0.1 135,246 + ynbD MCAODC_16195 0.73 +0.9 135,319 + ynbD MCAODC_16195 0.79 +0.3 135,479 + -0.7 135,485 - +1.9 135,495 + -0.1 135,543 + +0.5 135,552 + -1.5 135,663 - +0.2 135,755 + azoR MCAODC_16200 0.18 +1.5 135,787 + azoR MCAODC_16200 0.23 +0.5 135,788 - azoR MCAODC_16200 0.23 -1.3 135,842 + azoR MCAODC_16200 0.32 -1.2 135,890 + azoR MCAODC_16200 0.40 +2.1 135,903 - azoR MCAODC_16200 0.42 +1.0 135,964 + azoR MCAODC_16200 0.52 -0.8 135,964 + azoR MCAODC_16200 0.52 -0.8 135,965 - azoR MCAODC_16200 0.52 +0.3 136,242 + +0.9 136,271 - -2.1 136,308 + +2.1 136,331 + -0.4 136,395 + -1.3 136,400 + +0.9 136,400 + +0.6 136,401 - -0.9 136,407 - -0.5
Or see this region's nucleotide sequence