Strain Fitness in Escherichia coli ECRC101 around MCAODC_14995

Experiment: EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_14980 and MCAODC_14985 are separated by 270 nucleotidesMCAODC_14985 and MCAODC_14990 overlap by 1 nucleotidesMCAODC_14990 and MCAODC_14995 are separated by 7 nucleotidesMCAODC_14995 and MCAODC_15000 are separated by 455 nucleotidesMCAODC_15000 and gpA1 overlap by 4 nucleotides MCAODC_14980: MCAODC_14980 - SAR-endolysin, at 2,928,341 to 2,928,874 _14980 MCAODC_14985: MCAODC_14985 - Phage antirepressor protein, at 2,929,145 to 2,929,714 _14985 MCAODC_14990: MCAODC_14990 - hypothetical protein, at 2,929,714 to 2,929,860 _14990 MCAODC_14995: MCAODC_14995 - lysis protein, at 2,929,868 to 2,930,335 _14995 MCAODC_15000: MCAODC_15000 - terminase, at 2,930,791 to 2,931,267 _15000 MCAODC_15005: gpA1 - terminase, at 2,931,264 to 2,933,387 gpA1 Position (kb) 2929 2930 2931Strain fitness (log2 ratio) -1 0 1at 2930.488 kb on + strandat 2930.723 kb on - strandat 2930.774 kb on + strandat 2930.774 kb on + strandat 2930.788 kb on + strandat 2930.789 kb on - strandat 2930.811 kb on + strandat 2930.907 kb on + strand, within MCAODC_15000at 2930.907 kb on + strand, within MCAODC_15000at 2931.006 kb on + strand, within MCAODC_15000at 2931.016 kb on + strand, within MCAODC_15000at 2931.017 kb on - strand, within MCAODC_15000at 2931.039 kb on + strand, within MCAODC_15000at 2931.040 kb on - strand, within MCAODC_15000at 2931.116 kb on + strand, within MCAODC_15000at 2931.117 kb on - strand, within MCAODC_15000at 2931.117 kb on - strand, within MCAODC_15000at 2931.192 kb on - strand, within MCAODC_15000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV240
remove
2,930,488 + -0.5
2,930,723 - +0.1
2,930,774 + +0.2
2,930,774 + +0.1
2,930,788 + +0.1
2,930,789 - -0.8
2,930,811 + -0.3
2,930,907 + MCAODC_15000 0.24 -0.1
2,930,907 + MCAODC_15000 0.24 +0.3
2,931,006 + MCAODC_15000 0.45 +0.7
2,931,016 + MCAODC_15000 0.47 -1.3
2,931,017 - MCAODC_15000 0.47 +0.1
2,931,039 + MCAODC_15000 0.52 -0.3
2,931,040 - MCAODC_15000 0.52 +0.4
2,931,116 + MCAODC_15000 0.68 +1.7
2,931,117 - MCAODC_15000 0.68 -0.4
2,931,117 - MCAODC_15000 0.68 -0.9
2,931,192 - MCAODC_15000 0.84 +0.4

Or see this region's nucleotide sequence