Strain Fitness in Escherichia coli ECRC101 around MCAODC_07460

Experiment: EV240

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglpD and glpE are separated by 189 nucleotidesglpE and glpG are separated by 44 nucleotidesglpG and glpR are separated by 16 nucleotides MCAODC_07455: glpD - glycerol-3-phosphate dehydrogenase, at 1,509,729 to 1,511,234 glpD MCAODC_07460: glpE - thiosulfate sulfurtransferase GlpE, at 1,511,424 to 1,511,750 glpE MCAODC_07465: glpG - rhomboid family intramembrane serine protease GlpG, at 1,511,795 to 1,512,625 glpG MCAODC_07470: glpR - DeoR/GlpR family transcriptional regulator, at 1,512,642 to 1,513,400 glpR Position (kb) 1511 1512Strain fitness (log2 ratio) -2 -1 0 1 2at 1510.472 kb on + strand, within glpDat 1510.498 kb on + strand, within glpDat 1510.499 kb on - strand, within glpDat 1510.499 kb on - strand, within glpDat 1510.499 kb on - strand, within glpDat 1510.536 kb on - strand, within glpDat 1510.536 kb on - strand, within glpDat 1510.651 kb on + strand, within glpDat 1510.671 kb on - strand, within glpDat 1510.734 kb on - strand, within glpDat 1510.830 kb on - strand, within glpDat 1510.830 kb on - strand, within glpDat 1510.912 kb on + strand, within glpDat 1511.208 kb on + strandat 1511.209 kb on - strandat 1511.209 kb on - strandat 1511.266 kb on - strandat 1511.285 kb on + strandat 1511.285 kb on + strandat 1511.310 kb on + strandat 1511.337 kb on + strandat 1511.337 kb on + strandat 1511.338 kb on - strandat 1511.338 kb on - strandat 1511.338 kb on - strandat 1511.341 kb on + strandat 1511.341 kb on + strandat 1511.341 kb on + strandat 1511.342 kb on - strandat 1511.342 kb on - strandat 1511.343 kb on + strandat 1511.349 kb on + strandat 1511.358 kb on + strandat 1511.358 kb on + strandat 1511.358 kb on + strandat 1511.358 kb on + strandat 1511.359 kb on - strandat 1511.359 kb on - strandat 1511.376 kb on - strandat 1511.441 kb on + strandat 1511.442 kb on - strandat 1511.442 kb on - strandat 1511.444 kb on + strandat 1511.498 kb on + strand, within glpEat 1511.551 kb on + strand, within glpEat 1511.551 kb on + strand, within glpEat 1511.552 kb on - strand, within glpEat 1511.576 kb on + strand, within glpEat 1511.577 kb on - strand, within glpEat 1511.582 kb on + strand, within glpEat 1511.585 kb on + strand, within glpEat 1511.585 kb on + strand, within glpEat 1511.586 kb on - strand, within glpEat 1511.619 kb on + strand, within glpEat 1511.630 kb on + strand, within glpEat 1511.653 kb on - strand, within glpEat 1511.653 kb on - strand, within glpEat 1511.670 kb on + strand, within glpEat 1511.671 kb on - strand, within glpEat 1511.682 kb on + strand, within glpEat 1511.683 kb on - strand, within glpEat 1511.683 kb on - strand, within glpEat 1511.683 kb on - strand, within glpEat 1511.684 kb on + strand, within glpEat 1511.684 kb on + strand, within glpEat 1511.685 kb on - strand, within glpEat 1511.757 kb on - strandat 1511.757 kb on - strandat 1511.758 kb on + strandat 1511.759 kb on - strandat 1511.759 kb on - strandat 1511.780 kb on + strandat 1511.781 kb on - strandat 1511.806 kb on + strandat 1511.807 kb on - strandat 1511.849 kb on + strandat 1511.849 kb on + strandat 1511.849 kb on + strandat 1511.850 kb on - strandat 1511.850 kb on - strandat 1511.850 kb on - strandat 1511.890 kb on + strand, within glpGat 1511.891 kb on - strand, within glpGat 1512.118 kb on + strand, within glpGat 1512.118 kb on + strand, within glpGat 1512.118 kb on + strand, within glpGat 1512.118 kb on + strand, within glpGat 1512.156 kb on + strand, within glpGat 1512.156 kb on + strand, within glpGat 1512.244 kb on + strand, within glpGat 1512.244 kb on + strand, within glpGat 1512.244 kb on + strand, within glpGat 1512.273 kb on - strand, within glpGat 1512.273 kb on - strand, within glpGat 1512.311 kb on - strand, within glpGat 1512.315 kb on + strand, within glpGat 1512.315 kb on + strand, within glpGat 1512.315 kb on + strand, within glpGat 1512.315 kb on + strand, within glpGat 1512.316 kb on - strand, within glpGat 1512.316 kb on - strand, within glpGat 1512.325 kb on + strand, within glpGat 1512.354 kb on - strand, within glpGat 1512.354 kb on - strand, within glpGat 1512.354 kb on - strand, within glpGat 1512.354 kb on - strand, within glpGat 1512.407 kb on + strand, within glpGat 1512.407 kb on + strand, within glpGat 1512.422 kb on + strand, within glpGat 1512.432 kb on + strand, within glpGat 1512.464 kb on + strand, within glpGat 1512.464 kb on + strand, within glpGat 1512.464 kb on + strand, within glpGat 1512.464 kb on + strand, within glpGat 1512.465 kb on - strand, within glpGat 1512.480 kb on + strand, within glpGat 1512.484 kb on + strand, within glpGat 1512.484 kb on + strand, within glpGat 1512.484 kb on + strand, within glpGat 1512.484 kb on + strand, within glpGat 1512.485 kb on - strand, within glpGat 1512.485 kb on - strand, within glpGat 1512.485 kb on - strand, within glpGat 1512.580 kb on - strandat 1512.623 kb on + strandat 1512.624 kb on - strandat 1512.637 kb on + strandat 1512.637 kb on + strandat 1512.668 kb on + strandat 1512.669 kb on - strandat 1512.669 kb on - strandat 1512.696 kb on + strandat 1512.697 kb on - strandat 1512.697 kb on - strandat 1512.697 kb on - strandat 1512.746 kb on + strand, within glpR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV240
remove
1,510,472 + glpD MCAODC_07455 0.49 +0.7
1,510,498 + glpD MCAODC_07455 0.51 -1.3
1,510,499 - glpD MCAODC_07455 0.51 -1.6
1,510,499 - glpD MCAODC_07455 0.51 -2.7
1,510,499 - glpD MCAODC_07455 0.51 -0.3
1,510,536 - glpD MCAODC_07455 0.54 -0.3
1,510,536 - glpD MCAODC_07455 0.54 -0.6
1,510,651 + glpD MCAODC_07455 0.61 -1.3
1,510,671 - glpD MCAODC_07455 0.63 +2.7
1,510,734 - glpD MCAODC_07455 0.67 -0.9
1,510,830 - glpD MCAODC_07455 0.73 -0.9
1,510,830 - glpD MCAODC_07455 0.73 +0.7
1,510,912 + glpD MCAODC_07455 0.79 +0.1
1,511,208 + +0.1
1,511,209 - +0.7
1,511,209 - -1.1
1,511,266 - -1.3
1,511,285 + +0.7
1,511,285 + -0.9
1,511,310 + +0.3
1,511,337 + +0.4
1,511,337 + +0.9
1,511,338 - +0.3
1,511,338 - +0.3
1,511,338 - +0.2
1,511,341 + +0.4
1,511,341 + -0.4
1,511,341 + -2.3
1,511,342 - -1.2
1,511,342 - -0.6
1,511,343 + -0.4
1,511,349 + +1.6
1,511,358 + -0.7
1,511,358 + +0.4
1,511,358 + -1.1
1,511,358 + -0.6
1,511,359 - +0.9
1,511,359 - -2.3
1,511,376 - +0.1
1,511,441 + -1.6
1,511,442 - +0.1
1,511,442 - -1.6
1,511,444 + -0.7
1,511,498 + glpE MCAODC_07460 0.23 +0.7
1,511,551 + glpE MCAODC_07460 0.39 -0.6
1,511,551 + glpE MCAODC_07460 0.39 -0.0
1,511,552 - glpE MCAODC_07460 0.39 -1.6
1,511,576 + glpE MCAODC_07460 0.46 -1.1
1,511,577 - glpE MCAODC_07460 0.47 -1.4
1,511,582 + glpE MCAODC_07460 0.48 -1.1
1,511,585 + glpE MCAODC_07460 0.49 -0.0
1,511,585 + glpE MCAODC_07460 0.49 -0.3
1,511,586 - glpE MCAODC_07460 0.50 +1.1
1,511,619 + glpE MCAODC_07460 0.60 -0.7
1,511,630 + glpE MCAODC_07460 0.63 +0.1
1,511,653 - glpE MCAODC_07460 0.70 -0.9
1,511,653 - glpE MCAODC_07460 0.70 +0.1
1,511,670 + glpE MCAODC_07460 0.75 -1.3
1,511,671 - glpE MCAODC_07460 0.76 +0.5
1,511,682 + glpE MCAODC_07460 0.79 -1.4
1,511,683 - glpE MCAODC_07460 0.79 +0.1
1,511,683 - glpE MCAODC_07460 0.79 -2.0
1,511,683 - glpE MCAODC_07460 0.79 +0.8
1,511,684 + glpE MCAODC_07460 0.80 +0.3
1,511,684 + glpE MCAODC_07460 0.80 -1.7
1,511,685 - glpE MCAODC_07460 0.80 -2.7
1,511,757 - +0.1
1,511,757 - +0.0
1,511,758 + +0.7
1,511,759 - +0.5
1,511,759 - +1.1
1,511,780 + -1.8
1,511,781 - +0.9
1,511,806 + +1.7
1,511,807 - +1.9
1,511,849 + +0.3
1,511,849 + +0.7
1,511,849 + +0.7
1,511,850 - +1.0
1,511,850 - +1.0
1,511,850 - +0.1
1,511,890 + glpG MCAODC_07465 0.11 -0.1
1,511,891 - glpG MCAODC_07465 0.12 +0.7
1,512,118 + glpG MCAODC_07465 0.39 -0.5
1,512,118 + glpG MCAODC_07465 0.39 -0.3
1,512,118 + glpG MCAODC_07465 0.39 -1.7
1,512,118 + glpG MCAODC_07465 0.39 +1.2
1,512,156 + glpG MCAODC_07465 0.43 +1.7
1,512,156 + glpG MCAODC_07465 0.43 -0.8
1,512,244 + glpG MCAODC_07465 0.54 +0.1
1,512,244 + glpG MCAODC_07465 0.54 -0.2
1,512,244 + glpG MCAODC_07465 0.54 -0.3
1,512,273 - glpG MCAODC_07465 0.58 +0.9
1,512,273 - glpG MCAODC_07465 0.58 +0.4
1,512,311 - glpG MCAODC_07465 0.62 +1.7
1,512,315 + glpG MCAODC_07465 0.63 -0.7
1,512,315 + glpG MCAODC_07465 0.63 -2.3
1,512,315 + glpG MCAODC_07465 0.63 -0.4
1,512,315 + glpG MCAODC_07465 0.63 +0.5
1,512,316 - glpG MCAODC_07465 0.63 +1.7
1,512,316 - glpG MCAODC_07465 0.63 +2.4
1,512,325 + glpG MCAODC_07465 0.64 -1.3
1,512,354 - glpG MCAODC_07465 0.67 +0.7
1,512,354 - glpG MCAODC_07465 0.67 +1.6
1,512,354 - glpG MCAODC_07465 0.67 +0.7
1,512,354 - glpG MCAODC_07465 0.67 +2.7
1,512,407 + glpG MCAODC_07465 0.74 +0.7
1,512,407 + glpG MCAODC_07465 0.74 +0.7
1,512,422 + glpG MCAODC_07465 0.75 +1.0
1,512,432 + glpG MCAODC_07465 0.77 -1.0
1,512,464 + glpG MCAODC_07465 0.81 +0.9
1,512,464 + glpG MCAODC_07465 0.81 -0.6
1,512,464 + glpG MCAODC_07465 0.81 +0.5
1,512,464 + glpG MCAODC_07465 0.81 -0.1
1,512,465 - glpG MCAODC_07465 0.81 -0.9
1,512,480 + glpG MCAODC_07465 0.82 -0.2
1,512,484 + glpG MCAODC_07465 0.83 +0.5
1,512,484 + glpG MCAODC_07465 0.83 -0.1
1,512,484 + glpG MCAODC_07465 0.83 +0.1
1,512,484 + glpG MCAODC_07465 0.83 +0.2
1,512,485 - glpG MCAODC_07465 0.83 -1.4
1,512,485 - glpG MCAODC_07465 0.83 +1.7
1,512,485 - glpG MCAODC_07465 0.83 +2.1
1,512,580 - -0.1
1,512,623 + -1.5
1,512,624 - +0.4
1,512,637 + +1.0
1,512,637 + +1.2
1,512,668 + +1.5
1,512,669 - +1.3
1,512,669 - -0.9
1,512,696 + +1.3
1,512,697 - +0.1
1,512,697 - -0.6
1,512,697 - +1.7
1,512,746 + glpR MCAODC_07470 0.14 +0.6

Or see this region's nucleotide sequence