Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_05670 and MCAODC_05675 are separated by 147 nucleotides MCAODC_05675 and MCAODC_05680 are separated by 277 nucleotides MCAODC_05680 and MCAODC_05685 are separated by 15 nucleotides
MCAODC_05670: MCAODC_05670 - hypothetical protein, at 1,145,157 to 1,145,810
_05670
MCAODC_05675: MCAODC_05675 - hypothetical protein, at 1,145,958 to 1,146,440
_05675
MCAODC_05680: MCAODC_05680 - hypothetical protein, at 1,146,718 to 1,147,032
_05680
MCAODC_05685: MCAODC_05685 - hypothetical protein, at 1,147,048 to 1,148,151
_05685
Position (kb)
1145
1146
1147 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1144.958 kb on - strand at 1144.958 kb on - strand at 1144.959 kb on + strand at 1144.959 kb on + strand at 1144.959 kb on + strand at 1144.960 kb on - strand at 1144.961 kb on + strand at 1144.961 kb on + strand at 1145.001 kb on - strand at 1145.101 kb on - strand at 1145.449 kb on - strand, within MCAODC_05670 at 1145.634 kb on - strand, within MCAODC_05670 at 1145.815 kb on + strand at 1146.452 kb on + strand at 1146.464 kb on - strand at 1146.545 kb on - strand at 1146.551 kb on + strand at 1146.555 kb on - strand at 1146.599 kb on + strand at 1146.714 kb on + strand at 1146.718 kb on - strand at 1147.023 kb on + strand at 1147.054 kb on - strand at 1147.191 kb on + strand, within MCAODC_05685 at 1147.291 kb on + strand, within MCAODC_05685
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,144,958 - +0.3 1,144,958 - -1.8 1,144,959 + -1.2 1,144,959 + +0.7 1,144,959 + -0.3 1,144,960 - +0.5 1,144,961 + -0.2 1,144,961 + -0.6 1,145,001 - -1.8 1,145,101 - -0.6 1,145,449 - MCAODC_05670 0.45 +1.3 1,145,634 - MCAODC_05670 0.73 -0.3 1,145,815 + +0.4 1,146,452 + -0.7 1,146,464 - +1.5 1,146,545 - -0.4 1,146,551 + +1.3 1,146,555 - +0.7 1,146,599 + +1.7 1,146,714 + -1.1 1,146,718 - -0.3 1,147,023 + -0.4 1,147,054 - -1.3 1,147,191 + MCAODC_05685 0.13 -1.2 1,147,291 + MCAODC_05685 0.22 +3.3
Or see this region's nucleotide sequence