Strain Fitness in Escherichia coli ECRC101 around MCAODC_04495

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_04490 and fabY are separated by 410 nucleotidesfabY and dtd are separated by 44 nucleotidesdtd and yihY overlap by 4 nucleotides MCAODC_04490: MCAODC_04490 - hypothetical protein, at 909,840 to 910,733 _04490 MCAODC_04495: fabY - fatty acid biosynthesis protein FabY, at 911,144 to 912,085 fabY MCAODC_04500: dtd - D-aminoacyl-tRNA deacylase, at 912,130 to 912,567 dtd MCAODC_04505: yihY - virulence factor BrkB family protein, at 912,564 to 913,436 yihY Position (kb) 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 910.214 kb on - strand, within MCAODC_04490at 910.267 kb on - strand, within MCAODC_04490at 910.330 kb on - strand, within MCAODC_04490at 910.341 kb on + strand, within MCAODC_04490at 910.342 kb on - strand, within MCAODC_04490at 910.343 kb on + strand, within MCAODC_04490at 910.363 kb on + strand, within MCAODC_04490at 910.364 kb on + strand, within MCAODC_04490at 910.364 kb on + strand, within MCAODC_04490at 910.454 kb on + strand, within MCAODC_04490at 910.455 kb on - strand, within MCAODC_04490at 910.457 kb on - strand, within MCAODC_04490at 910.458 kb on + strand, within MCAODC_04490at 910.458 kb on + strand, within MCAODC_04490at 910.459 kb on - strand, within MCAODC_04490at 910.857 kb on + strandat 910.873 kb on - strandat 910.936 kb on + strandat 911.029 kb on + strandat 911.073 kb on + strandat 911.098 kb on + strandat 911.100 kb on + strandat 911.100 kb on + strandat 911.145 kb on + strandat 911.146 kb on - strandat 911.204 kb on - strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.205 kb on + strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.206 kb on - strandat 911.362 kb on - strand, within fabYat 911.429 kb on - strand, within fabYat 911.462 kb on + strand, within fabYat 911.482 kb on + strand, within fabYat 911.483 kb on - strand, within fabYat 911.518 kb on + strand, within fabYat 911.518 kb on + strand, within fabYat 911.518 kb on + strand, within fabYat 911.519 kb on - strand, within fabYat 911.519 kb on - strand, within fabYat 911.539 kb on + strand, within fabYat 911.540 kb on - strand, within fabYat 911.540 kb on - strand, within fabYat 911.541 kb on + strand, within fabYat 911.541 kb on + strand, within fabYat 911.541 kb on + strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.542 kb on - strand, within fabYat 911.581 kb on + strand, within fabYat 911.589 kb on + strand, within fabYat 911.590 kb on - strand, within fabYat 911.590 kb on - strand, within fabYat 911.590 kb on - strand, within fabYat 911.635 kb on + strand, within fabYat 911.659 kb on + strand, within fabYat 911.896 kb on + strand, within fabYat 911.896 kb on + strand, within fabYat 911.896 kb on + strand, within fabYat 911.897 kb on - strand, within fabYat 911.899 kb on + strand, within fabYat 911.900 kb on - strand, within fabYat 911.900 kb on - strand, within fabYat 911.901 kb on + strand, within fabYat 911.901 kb on + strand, within fabYat 911.901 kb on + strand, within fabYat 911.901 kb on + strand, within fabYat 911.901 kb on + strand, within fabYat 911.902 kb on - strand, within fabYat 911.902 kb on - strand, within fabYat 911.902 kb on - strand, within fabYat 911.902 kb on - strand, within fabYat 911.912 kb on + strand, within fabYat 912.011 kb on - strandat 912.036 kb on + strandat 912.037 kb on - strandat 912.039 kb on + strandat 912.039 kb on + strandat 912.039 kb on + strandat 912.039 kb on + strandat 912.048 kb on - strandat 912.048 kb on - strandat 912.081 kb on + strandat 912.081 kb on + strandat 912.081 kb on + strandat 912.081 kb on + strandat 912.082 kb on - strandat 912.082 kb on - strandat 912.082 kb on - strandat 912.082 kb on - strandat 912.082 kb on - strandat 912.082 kb on - strandat 912.085 kb on + strandat 912.085 kb on + strandat 912.085 kb on + strandat 912.086 kb on - strandat 912.086 kb on - strandat 912.091 kb on + strandat 912.091 kb on + strandat 912.092 kb on - strandat 912.133 kb on + strandat 912.134 kb on - strandat 912.134 kb on - strandat 912.176 kb on - strand, within dtdat 912.245 kb on + strand, within dtdat 912.245 kb on + strand, within dtdat 912.246 kb on - strand, within dtdat 912.251 kb on + strand, within dtdat 912.251 kb on + strand, within dtdat 912.251 kb on + strand, within dtdat 912.251 kb on + strand, within dtdat 912.252 kb on - strand, within dtdat 912.252 kb on - strand, within dtdat 912.252 kb on - strand, within dtdat 912.252 kb on - strand, within dtdat 912.253 kb on + strand, within dtdat 912.253 kb on + strand, within dtdat 912.253 kb on + strand, within dtdat 912.254 kb on - strand, within dtdat 912.331 kb on - strand, within dtdat 912.403 kb on - strand, within dtdat 912.478 kb on + strand, within dtdat 912.478 kb on + strand, within dtdat 912.557 kb on - strandat 912.603 kb on + strandat 912.603 kb on + strandat 912.614 kb on - strandat 912.656 kb on + strand, within yihYat 912.656 kb on + strand, within yihYat 912.657 kb on - strand, within yihYat 912.712 kb on + strand, within yihYat 912.743 kb on + strand, within yihYat 912.745 kb on + strand, within yihYat 912.822 kb on + strand, within yihYat 912.833 kb on + strand, within yihYat 912.833 kb on + strand, within yihYat 912.914 kb on + strand, within yihYat 912.915 kb on - strand, within yihYat 912.915 kb on - strand, within yihYat 912.950 kb on - strand, within yihYat 913.009 kb on + strand, within yihYat 913.084 kb on + strand, within yihYat 913.084 kb on + strand, within yihYat 913.084 kb on + strand, within yihYat 913.085 kb on - strand, within yihYat 913.085 kb on - strand, within yihYat 913.085 kb on - strand, within yihYat 913.085 kb on - strand, within yihY

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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910,214 - MCAODC_04490 0.42 -0.5
910,267 - MCAODC_04490 0.48 +0.7
910,330 - MCAODC_04490 0.55 +0.1
910,341 + MCAODC_04490 0.56 -1.6
910,342 - MCAODC_04490 0.56 -1.5
910,343 + MCAODC_04490 0.56 +1.7
910,363 + MCAODC_04490 0.59 +0.3
910,364 + MCAODC_04490 0.59 +0.1
910,364 + MCAODC_04490 0.59 +0.5
910,454 + MCAODC_04490 0.69 -2.0
910,455 - MCAODC_04490 0.69 -1.4
910,457 - MCAODC_04490 0.69 +1.5
910,458 + MCAODC_04490 0.69 +0.9
910,458 + MCAODC_04490 0.69 +1.7
910,459 - MCAODC_04490 0.69 -0.2
910,857 + -0.3
910,873 - -1.7
910,936 + -1.3
911,029 + -0.6
911,073 + -0.4
911,098 + +0.8
911,100 + -0.3
911,100 + -0.9
911,145 + -0.4
911,146 - +0.5
911,204 - +1.0
911,205 + -0.5
911,205 + +0.8
911,205 + +1.1
911,205 + +0.5
911,205 + -1.5
911,205 + +1.0
911,205 + +1.7
911,205 + -1.4
911,206 - -0.7
911,206 - -0.3
911,206 - -0.5
911,206 - -0.6
911,206 - +0.1
911,206 - +0.1
911,206 - -0.3
911,206 - +0.6
911,206 - +0.2
911,206 - +0.3
911,206 - -0.5
911,206 - -0.0
911,206 - -1.0
911,206 - +0.8
911,362 - fabY MCAODC_04495 0.23 +0.2
911,429 - fabY MCAODC_04495 0.30 +0.5
911,462 + fabY MCAODC_04495 0.34 +0.9
911,482 + fabY MCAODC_04495 0.36 +0.5
911,483 - fabY MCAODC_04495 0.36 +0.3
911,518 + fabY MCAODC_04495 0.40 -1.2
911,518 + fabY MCAODC_04495 0.40 -0.8
911,518 + fabY MCAODC_04495 0.40 -1.5
911,519 - fabY MCAODC_04495 0.40 +1.7
911,519 - fabY MCAODC_04495 0.40 -0.9
911,539 + fabY MCAODC_04495 0.42 +0.4
911,540 - fabY MCAODC_04495 0.42 +0.2
911,540 - fabY MCAODC_04495 0.42 -1.9
911,541 + fabY MCAODC_04495 0.42 -1.6
911,541 + fabY MCAODC_04495 0.42 +0.3
911,541 + fabY MCAODC_04495 0.42 -0.4
911,542 - fabY MCAODC_04495 0.42 +0.3
911,542 - fabY MCAODC_04495 0.42 +0.4
911,542 - fabY MCAODC_04495 0.42 +1.7
911,542 - fabY MCAODC_04495 0.42 +0.4
911,581 + fabY MCAODC_04495 0.46 -1.8
911,589 + fabY MCAODC_04495 0.47 -1.8
911,590 - fabY MCAODC_04495 0.47 +0.7
911,590 - fabY MCAODC_04495 0.47 -0.8
911,590 - fabY MCAODC_04495 0.47 +0.1
911,635 + fabY MCAODC_04495 0.52 -0.5
911,659 + fabY MCAODC_04495 0.55 -0.5
911,896 + fabY MCAODC_04495 0.80 -0.4
911,896 + fabY MCAODC_04495 0.80 -0.3
911,896 + fabY MCAODC_04495 0.80 -1.0
911,897 - fabY MCAODC_04495 0.80 -0.1
911,899 + fabY MCAODC_04495 0.80 -0.0
911,900 - fabY MCAODC_04495 0.80 -0.7
911,900 - fabY MCAODC_04495 0.80 +0.7
911,901 + fabY MCAODC_04495 0.80 -0.6
911,901 + fabY MCAODC_04495 0.80 -0.9
911,901 + fabY MCAODC_04495 0.80 +0.0
911,901 + fabY MCAODC_04495 0.80 -1.7
911,901 + fabY MCAODC_04495 0.80 -0.6
911,902 - fabY MCAODC_04495 0.80 -1.6
911,902 - fabY MCAODC_04495 0.80 -1.2
911,902 - fabY MCAODC_04495 0.80 -0.4
911,902 - fabY MCAODC_04495 0.80 -1.5
911,912 + fabY MCAODC_04495 0.82 +1.2
912,011 - +1.7
912,036 + +0.2
912,037 - -0.0
912,039 + -1.6
912,039 + -0.6
912,039 + -3.1
912,039 + -1.8
912,048 - -1.8
912,048 - +0.7
912,081 + -1.1
912,081 + +1.0
912,081 + -0.9
912,081 + -1.0
912,082 - -0.3
912,082 - -1.6
912,082 - -0.2
912,082 - -0.4
912,082 - -0.8
912,082 - -0.1
912,085 + -0.2
912,085 + -0.1
912,085 + -0.6
912,086 - -0.2
912,086 - +0.4
912,091 + -0.0
912,091 + +0.2
912,092 - -0.1
912,133 + +0.6
912,134 - -1.3
912,134 - -0.3
912,176 - dtd MCAODC_04500 0.11 -0.3
912,245 + dtd MCAODC_04500 0.26 +1.4
912,245 + dtd MCAODC_04500 0.26 -1.6
912,246 - dtd MCAODC_04500 0.26 +0.2
912,251 + dtd MCAODC_04500 0.28 +0.2
912,251 + dtd MCAODC_04500 0.28 +0.2
912,251 + dtd MCAODC_04500 0.28 +0.0
912,251 + dtd MCAODC_04500 0.28 +0.2
912,252 - dtd MCAODC_04500 0.28 +1.2
912,252 - dtd MCAODC_04500 0.28 +0.7
912,252 - dtd MCAODC_04500 0.28 -1.1
912,252 - dtd MCAODC_04500 0.28 +0.8
912,253 + dtd MCAODC_04500 0.28 +0.1
912,253 + dtd MCAODC_04500 0.28 +0.1
912,253 + dtd MCAODC_04500 0.28 +0.7
912,254 - dtd MCAODC_04500 0.28 +0.1
912,331 - dtd MCAODC_04500 0.46 +2.7
912,403 - dtd MCAODC_04500 0.62 +0.9
912,478 + dtd MCAODC_04500 0.79 -0.6
912,478 + dtd MCAODC_04500 0.79 -0.9
912,557 - -0.1
912,603 + -0.0
912,603 + -0.6
912,614 - +0.3
912,656 + yihY MCAODC_04505 0.11 -0.6
912,656 + yihY MCAODC_04505 0.11 -0.3
912,657 - yihY MCAODC_04505 0.11 +1.3
912,712 + yihY MCAODC_04505 0.17 -1.3
912,743 + yihY MCAODC_04505 0.21 +0.3
912,745 + yihY MCAODC_04505 0.21 -0.3
912,822 + yihY MCAODC_04505 0.30 -0.5
912,833 + yihY MCAODC_04505 0.31 +0.7
912,833 + yihY MCAODC_04505 0.31 -0.8
912,914 + yihY MCAODC_04505 0.40 +0.3
912,915 - yihY MCAODC_04505 0.40 +0.0
912,915 - yihY MCAODC_04505 0.40 +0.5
912,950 - yihY MCAODC_04505 0.44 -0.8
913,009 + yihY MCAODC_04505 0.51 +0.7
913,084 + yihY MCAODC_04505 0.60 +0.1
913,084 + yihY MCAODC_04505 0.60 +0.5
913,084 + yihY MCAODC_04505 0.60 -0.3
913,085 - yihY MCAODC_04505 0.60 +0.2
913,085 - yihY MCAODC_04505 0.60 -0.9
913,085 - yihY MCAODC_04505 0.60 -0.3
913,085 - yihY MCAODC_04505 0.60 +0.4

Or see this region's nucleotide sequence