Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjcS and ytcA are separated by 208 nucleotides ytcA and mdtN are separated by 18 nucleotides mdtN and mdtO overlap by 1 nucleotides
MCAODC_03255: yjcS - alkyl sulfatase YjcS, at 654,783 to 656,768
yjcS
MCAODC_03260: ytcA - Uncharacterized protein YtcA, at 656,977 to 657,252
ytcA
MCAODC_03265: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 657,271 to 658,302
mdtN
MCAODC_03270: mdtO - multidrug efflux transporter permease subunit MdtO, at 658,302 to 660,353
mdtO
Position (kb) 657
658
659 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 656.340 kb on + strand, within yjcS at 656.341 kb on - strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.378 kb on + strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.379 kb on - strand, within yjcS at 656.493 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.511 kb on - strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.558 kb on + strand, within yjcS at 656.559 kb on - strand, within yjcS at 656.559 kb on - strand, within yjcS at 656.562 kb on + strand, within yjcS at 656.567 kb on + strand, within yjcS at 656.568 kb on - strand, within yjcS at 656.568 kb on - strand, within yjcS at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.602 kb on - strand at 656.602 kb on - strand at 656.851 kb on + strand at 656.852 kb on - strand at 656.852 kb on - strand at 657.171 kb on + strand, within ytcA at 657.256 kb on - strand at 657.256 kb on - strand at 657.256 kb on - strand at 657.279 kb on + strand at 657.321 kb on - strand at 657.387 kb on + strand, within mdtN at 657.387 kb on + strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.388 kb on - strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.397 kb on + strand, within mdtN at 657.398 kb on - strand, within mdtN at 657.398 kb on - strand, within mdtN at 657.412 kb on - strand, within mdtN at 657.412 kb on - strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.449 kb on + strand, within mdtN at 657.450 kb on - strand, within mdtN at 657.450 kb on - strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.576 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.675 kb on + strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.676 kb on - strand, within mdtN at 657.680 kb on + strand, within mdtN at 657.774 kb on + strand, within mdtN at 657.774 kb on + strand, within mdtN at 657.774 kb on + strand, within mdtN at 657.774 kb on + strand, within mdtN at 657.775 kb on - strand, within mdtN at 657.775 kb on - strand, within mdtN at 657.782 kb on + strand, within mdtN at 657.782 kb on + strand, within mdtN at 657.833 kb on + strand, within mdtN at 657.833 kb on + strand, within mdtN at 657.833 kb on + strand, within mdtN at 657.834 kb on - strand, within mdtN at 657.834 kb on - strand, within mdtN at 657.834 kb on - strand, within mdtN at 657.982 kb on - strand, within mdtN at 657.986 kb on + strand, within mdtN at 658.006 kb on + strand, within mdtN at 658.056 kb on + strand, within mdtN at 658.056 kb on + strand, within mdtN at 658.057 kb on - strand, within mdtN at 658.188 kb on + strand, within mdtN at 658.189 kb on - strand, within mdtN at 658.191 kb on + strand, within mdtN at 658.191 kb on + strand, within mdtN at 658.192 kb on - strand, within mdtN at 658.240 kb on - strand at 658.284 kb on + strand at 658.367 kb on - strand at 658.367 kb on - strand at 658.367 kb on - strand at 658.415 kb on - strand at 658.491 kb on + strand at 658.491 kb on + strand at 658.515 kb on + strand, within mdtO at 658.515 kb on + strand, within mdtO at 658.516 kb on - strand, within mdtO at 658.585 kb on - strand, within mdtO at 658.713 kb on + strand, within mdtO at 658.713 kb on + strand, within mdtO at 658.714 kb on - strand, within mdtO at 658.744 kb on - strand, within mdtO at 658.766 kb on - strand, within mdtO at 658.778 kb on + strand, within mdtO at 658.778 kb on + strand, within mdtO at 658.778 kb on + strand, within mdtO at 658.779 kb on - strand, within mdtO at 658.795 kb on - strand, within mdtO at 658.807 kb on + strand, within mdtO at 658.808 kb on - strand, within mdtO at 658.808 kb on - strand, within mdtO at 658.808 kb on - strand, within mdtO at 658.825 kb on + strand, within mdtO at 658.871 kb on + strand, within mdtO at 658.895 kb on + strand, within mdtO at 659.049 kb on + strand, within mdtO at 659.049 kb on + strand, within mdtO at 659.049 kb on + strand, within mdtO at 659.049 kb on + strand, within mdtO at 659.049 kb on + strand, within mdtO at 659.050 kb on - strand, within mdtO at 659.055 kb on + strand, within mdtO at 659.056 kb on - strand, within mdtO at 659.056 kb on - strand, within mdtO at 659.108 kb on + strand, within mdtO at 659.232 kb on - strand, within mdtO at 659.243 kb on + strand, within mdtO at 659.244 kb on - strand, within mdtO at 659.244 kb on - strand, within mdtO at 659.260 kb on + strand, within mdtO at 659.260 kb on + strand, within mdtO at 659.261 kb on - strand, within mdtO at 659.261 kb on - strand, within mdtO
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 656,340 + yjcS MCAODC_03255 0.78 -1.3 656,341 - yjcS MCAODC_03255 0.78 +0.3 656,378 + yjcS MCAODC_03255 0.80 -1.1 656,378 + yjcS MCAODC_03255 0.80 -0.9 656,378 + yjcS MCAODC_03255 0.80 +0.0 656,378 + yjcS MCAODC_03255 0.80 +0.1 656,378 + yjcS MCAODC_03255 0.80 -0.6 656,378 + yjcS MCAODC_03255 0.80 -0.7 656,379 - yjcS MCAODC_03255 0.80 -1.9 656,379 - yjcS MCAODC_03255 0.80 -0.1 656,379 - yjcS MCAODC_03255 0.80 +0.3 656,493 - yjcS MCAODC_03255 0.86 +0.6 656,511 - yjcS MCAODC_03255 0.87 -0.3 656,511 - yjcS MCAODC_03255 0.87 +1.7 656,511 - yjcS MCAODC_03255 0.87 -0.3 656,558 + yjcS MCAODC_03255 0.89 +1.1 656,558 + yjcS MCAODC_03255 0.89 -1.1 656,558 + yjcS MCAODC_03255 0.89 +0.6 656,559 - yjcS MCAODC_03255 0.89 -0.3 656,559 - yjcS MCAODC_03255 0.89 -0.4 656,562 + yjcS MCAODC_03255 0.90 +0.9 656,567 + yjcS MCAODC_03255 0.90 -1.1 656,568 - yjcS MCAODC_03255 0.90 -0.8 656,568 - yjcS MCAODC_03255 0.90 -1.1 656,601 + -1.1 656,601 + -2.0 656,601 + -0.3 656,602 - +0.8 656,602 - +0.3 656,851 + -1.4 656,852 - +0.1 656,852 - -1.4 657,171 + ytcA MCAODC_03260 0.70 +0.5 657,256 - +1.7 657,256 - -1.4 657,256 - +0.7 657,279 + +0.3 657,321 - +0.6 657,387 + mdtN MCAODC_03265 0.11 -0.5 657,387 + mdtN MCAODC_03265 0.11 -0.4 657,388 - mdtN MCAODC_03265 0.11 +0.1 657,388 - mdtN MCAODC_03265 0.11 -0.9 657,388 - mdtN MCAODC_03265 0.11 -1.4 657,388 - mdtN MCAODC_03265 0.11 -0.7 657,388 - mdtN MCAODC_03265 0.11 +0.1 657,397 + mdtN MCAODC_03265 0.12 -0.9 657,397 + mdtN MCAODC_03265 0.12 +1.4 657,397 + mdtN MCAODC_03265 0.12 -0.4 657,397 + mdtN MCAODC_03265 0.12 -0.0 657,397 + mdtN MCAODC_03265 0.12 -0.3 657,397 + mdtN MCAODC_03265 0.12 +0.6 657,398 - mdtN MCAODC_03265 0.12 -2.0 657,398 - mdtN MCAODC_03265 0.12 -0.6 657,412 - mdtN MCAODC_03265 0.14 -0.1 657,412 - mdtN MCAODC_03265 0.14 -0.3 657,449 + mdtN MCAODC_03265 0.17 +0.6 657,449 + mdtN MCAODC_03265 0.17 -0.0 657,449 + mdtN MCAODC_03265 0.17 -0.6 657,450 - mdtN MCAODC_03265 0.17 +2.3 657,450 - mdtN MCAODC_03265 0.17 -0.4 657,576 + mdtN MCAODC_03265 0.30 -0.3 657,576 + mdtN MCAODC_03265 0.30 -0.0 657,576 + mdtN MCAODC_03265 0.30 -0.3 657,675 + mdtN MCAODC_03265 0.39 +0.8 657,675 + mdtN MCAODC_03265 0.39 -0.6 657,675 + mdtN MCAODC_03265 0.39 -0.2 657,675 + mdtN MCAODC_03265 0.39 +0.3 657,675 + mdtN MCAODC_03265 0.39 +0.5 657,675 + mdtN MCAODC_03265 0.39 +1.0 657,676 - mdtN MCAODC_03265 0.39 -1.2 657,676 - mdtN MCAODC_03265 0.39 -0.2 657,676 - mdtN MCAODC_03265 0.39 +0.1 657,676 - mdtN MCAODC_03265 0.39 -1.0 657,680 + mdtN MCAODC_03265 0.40 -0.1 657,774 + mdtN MCAODC_03265 0.49 +0.3 657,774 + mdtN MCAODC_03265 0.49 +0.2 657,774 + mdtN MCAODC_03265 0.49 -0.0 657,774 + mdtN MCAODC_03265 0.49 -0.1 657,775 - mdtN MCAODC_03265 0.49 -1.9 657,775 - mdtN MCAODC_03265 0.49 -0.9 657,782 + mdtN MCAODC_03265 0.50 +0.1 657,782 + mdtN MCAODC_03265 0.50 -1.0 657,833 + mdtN MCAODC_03265 0.54 -0.3 657,833 + mdtN MCAODC_03265 0.54 -0.4 657,833 + mdtN MCAODC_03265 0.54 +0.9 657,834 - mdtN MCAODC_03265 0.55 +0.2 657,834 - mdtN MCAODC_03265 0.55 -0.4 657,834 - mdtN MCAODC_03265 0.55 +1.3 657,982 - mdtN MCAODC_03265 0.69 -0.5 657,986 + mdtN MCAODC_03265 0.69 +0.1 658,006 + mdtN MCAODC_03265 0.71 +3.5 658,056 + mdtN MCAODC_03265 0.76 +1.5 658,056 + mdtN MCAODC_03265 0.76 -1.6 658,057 - mdtN MCAODC_03265 0.76 -0.1 658,188 + mdtN MCAODC_03265 0.89 -1.5 658,189 - mdtN MCAODC_03265 0.89 +0.1 658,191 + mdtN MCAODC_03265 0.89 +1.4 658,191 + mdtN MCAODC_03265 0.89 -0.9 658,192 - mdtN MCAODC_03265 0.89 +0.4 658,240 - +0.4 658,284 + -0.9 658,367 - +1.2 658,367 - -2.4 658,367 - +0.1 658,415 - +0.4 658,491 + +0.6 658,491 + +0.1 658,515 + mdtO MCAODC_03270 0.10 -0.4 658,515 + mdtO MCAODC_03270 0.10 +1.1 658,516 - mdtO MCAODC_03270 0.10 +1.0 658,585 - mdtO MCAODC_03270 0.14 +1.5 658,713 + mdtO MCAODC_03270 0.20 -0.2 658,713 + mdtO MCAODC_03270 0.20 -0.3 658,714 - mdtO MCAODC_03270 0.20 -0.6 658,744 - mdtO MCAODC_03270 0.22 -0.1 658,766 - mdtO MCAODC_03270 0.23 +0.2 658,778 + mdtO MCAODC_03270 0.23 -0.6 658,778 + mdtO MCAODC_03270 0.23 +0.1 658,778 + mdtO MCAODC_03270 0.23 -0.6 658,779 - mdtO MCAODC_03270 0.23 +0.4 658,795 - mdtO MCAODC_03270 0.24 -0.3 658,807 + mdtO MCAODC_03270 0.25 -1.1 658,808 - mdtO MCAODC_03270 0.25 +3.3 658,808 - mdtO MCAODC_03270 0.25 -1.5 658,808 - mdtO MCAODC_03270 0.25 +0.4 658,825 + mdtO MCAODC_03270 0.25 -1.4 658,871 + mdtO MCAODC_03270 0.28 +0.3 658,895 + mdtO MCAODC_03270 0.29 +1.0 659,049 + mdtO MCAODC_03270 0.36 -1.6 659,049 + mdtO MCAODC_03270 0.36 -0.3 659,049 + mdtO MCAODC_03270 0.36 -0.6 659,049 + mdtO MCAODC_03270 0.36 +0.6 659,049 + mdtO MCAODC_03270 0.36 -1.0 659,050 - mdtO MCAODC_03270 0.36 +0.7 659,055 + mdtO MCAODC_03270 0.37 +1.0 659,056 - mdtO MCAODC_03270 0.37 -0.9 659,056 - mdtO MCAODC_03270 0.37 -0.9 659,108 + mdtO MCAODC_03270 0.39 +0.3 659,232 - mdtO MCAODC_03270 0.45 +0.1 659,243 + mdtO MCAODC_03270 0.46 +1.7 659,244 - mdtO MCAODC_03270 0.46 +1.2 659,244 - mdtO MCAODC_03270 0.46 +0.0 659,260 + mdtO MCAODC_03270 0.47 +1.7 659,260 + mdtO MCAODC_03270 0.47 +0.1 659,261 - mdtO MCAODC_03270 0.47 -0.3 659,261 - mdtO MCAODC_03270 0.47 -0.6
Or see this region's nucleotide sequence