Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmA and frdA are separated by 324 nucleotides frdA and frdB overlap by 8 nucleotides frdB and MCAODC_02865 are separated by 10 nucleotides
MCAODC_02850: epmA - elongation factor P--(R)-beta-lysine ligase, at 576,165 to 577,142
epmA
MCAODC_02855: frdA - fumarate reductase (quinol) flavoprotein subunit, at 577,467 to 579,275
frdA
MCAODC_02860: frdB - fumarate reductase iron-sulfur protein, at 579,268 to 580,002
frdB
MCAODC_02865: MCAODC_02865 - Fumarate reductase subunit C, at 580,013 to 580,408
_02865
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 577.218 kb on + strand at 577.219 kb on - strand at 577.264 kb on + strand at 577.264 kb on + strand at 577.272 kb on - strand at 577.276 kb on + strand at 577.297 kb on + strand at 577.297 kb on + strand at 577.345 kb on - strand at 577.356 kb on + strand at 577.356 kb on + strand at 577.356 kb on + strand at 577.357 kb on - strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.359 kb on - strand at 577.366 kb on + strand at 577.366 kb on + strand at 577.366 kb on + strand at 577.367 kb on - strand at 577.367 kb on - strand at 577.370 kb on + strand at 577.370 kb on + strand at 577.371 kb on - strand at 577.371 kb on - strand at 577.371 kb on - strand at 577.371 kb on - strand at 577.372 kb on + strand at 577.373 kb on - strand at 577.389 kb on - strand at 577.405 kb on - strand at 577.419 kb on + strand at 577.419 kb on + strand at 577.420 kb on - strand at 577.429 kb on + strand at 577.429 kb on + strand at 577.430 kb on - strand at 577.430 kb on - strand at 577.499 kb on - strand at 577.519 kb on + strand at 577.519 kb on + strand at 577.520 kb on - strand at 577.570 kb on + strand at 577.582 kb on + strand at 577.679 kb on - strand, within frdA at 577.679 kb on - strand, within frdA at 577.719 kb on + strand, within frdA at 577.719 kb on + strand, within frdA at 577.807 kb on + strand, within frdA at 577.807 kb on + strand, within frdA at 577.807 kb on + strand, within frdA at 577.808 kb on - strand, within frdA at 577.808 kb on - strand, within frdA at 577.838 kb on + strand, within frdA at 577.838 kb on + strand, within frdA at 577.871 kb on + strand, within frdA at 577.871 kb on + strand, within frdA at 577.872 kb on - strand, within frdA at 577.946 kb on + strand, within frdA at 577.947 kb on - strand, within frdA at 577.981 kb on + strand, within frdA at 577.982 kb on - strand, within frdA at 578.036 kb on + strand, within frdA at 578.036 kb on + strand, within frdA at 578.043 kb on - strand, within frdA at 578.043 kb on - strand, within frdA at 578.071 kb on - strand, within frdA at 578.071 kb on - strand, within frdA at 578.160 kb on + strand, within frdA at 578.161 kb on - strand, within frdA at 578.265 kb on + strand, within frdA at 578.310 kb on + strand, within frdA at 578.310 kb on + strand, within frdA at 578.310 kb on + strand, within frdA at 578.311 kb on - strand, within frdA at 578.311 kb on - strand, within frdA at 578.311 kb on - strand, within frdA at 578.311 kb on - strand, within frdA at 578.312 kb on + strand, within frdA at 578.312 kb on + strand, within frdA at 578.481 kb on + strand, within frdA at 578.481 kb on + strand, within frdA at 578.481 kb on + strand, within frdA at 578.481 kb on + strand, within frdA at 578.482 kb on - strand, within frdA at 578.482 kb on - strand, within frdA at 578.482 kb on - strand, within frdA at 578.535 kb on + strand, within frdA at 578.535 kb on + strand, within frdA at 578.535 kb on + strand, within frdA at 578.536 kb on - strand, within frdA at 578.536 kb on - strand, within frdA at 578.536 kb on - strand, within frdA at 578.536 kb on - strand, within frdA at 578.536 kb on - strand, within frdA at 578.536 kb on - strand, within frdA at 578.582 kb on + strand, within frdA at 578.583 kb on - strand, within frdA at 578.583 kb on - strand, within frdA at 578.865 kb on + strand, within frdA at 578.865 kb on + strand, within frdA at 578.866 kb on - strand, within frdA at 578.866 kb on - strand, within frdA at 578.866 kb on - strand, within frdA at 578.866 kb on - strand, within frdA at 578.866 kb on - strand, within frdA at 578.979 kb on + strand, within frdA at 578.979 kb on + strand, within frdA at 578.980 kb on - strand, within frdA at 578.980 kb on - strand, within frdA at 578.980 kb on - strand, within frdA at 579.020 kb on + strand, within frdA at 579.020 kb on + strand, within frdA at 579.021 kb on - strand, within frdA at 579.044 kb on + strand, within frdA at 579.044 kb on + strand, within frdA at 579.044 kb on + strand, within frdA at 579.044 kb on + strand, within frdA at 579.045 kb on - strand, within frdA at 579.045 kb on - strand, within frdA at 579.163 kb on - strand at 579.179 kb on + strand at 579.179 kb on + strand at 579.180 kb on - strand at 579.180 kb on - strand at 579.182 kb on + strand at 579.182 kb on + strand at 579.182 kb on + strand at 579.182 kb on + strand at 579.183 kb on - strand at 579.183 kb on - strand at 579.197 kb on + strand at 579.207 kb on + strand at 579.307 kb on + strand at 579.307 kb on + strand at 579.309 kb on + strand at 579.309 kb on + strand at 579.310 kb on - strand at 579.336 kb on + strand at 579.346 kb on + strand, within frdB at 579.346 kb on + strand, within frdB at 579.347 kb on - strand, within frdB at 579.347 kb on - strand, within frdB at 579.347 kb on - strand, within frdB at 579.358 kb on + strand, within frdB at 579.358 kb on + strand, within frdB at 579.359 kb on - strand, within frdB at 579.369 kb on + strand, within frdB at 579.369 kb on + strand, within frdB at 579.369 kb on + strand, within frdB at 579.369 kb on + strand, within frdB at 579.377 kb on + strand, within frdB at 579.377 kb on + strand, within frdB at 579.395 kb on - strand, within frdB at 579.444 kb on + strand, within frdB at 579.445 kb on - strand, within frdB at 579.478 kb on - strand, within frdB at 579.501 kb on + strand, within frdB at 579.502 kb on - strand, within frdB at 579.502 kb on - strand, within frdB at 579.502 kb on - strand, within frdB at 579.502 kb on - strand, within frdB at 579.520 kb on + strand, within frdB at 579.531 kb on + strand, within frdB at 579.532 kb on - strand, within frdB at 579.552 kb on + strand, within frdB at 579.552 kb on + strand, within frdB at 579.552 kb on + strand, within frdB at 579.552 kb on + strand, within frdB at 579.552 kb on + strand, within frdB at 579.585 kb on + strand, within frdB at 579.586 kb on - strand, within frdB at 579.625 kb on + strand, within frdB at 579.625 kb on + strand, within frdB at 579.625 kb on + strand, within frdB at 579.625 kb on + strand, within frdB at 579.625 kb on + strand, within frdB at 579.626 kb on - strand, within frdB at 579.626 kb on - strand, within frdB at 579.626 kb on - strand, within frdB at 579.626 kb on - strand, within frdB at 579.626 kb on - strand, within frdB at 579.660 kb on + strand, within frdB at 579.660 kb on + strand, within frdB at 579.661 kb on - strand, within frdB at 579.663 kb on + strand, within frdB at 579.663 kb on + strand, within frdB at 579.663 kb on + strand, within frdB at 579.664 kb on - strand, within frdB at 579.664 kb on - strand, within frdB at 579.664 kb on - strand, within frdB at 579.664 kb on - strand, within frdB at 579.695 kb on - strand, within frdB at 579.789 kb on + strand, within frdB at 579.790 kb on - strand, within frdB at 579.805 kb on + strand, within frdB at 579.806 kb on - strand, within frdB at 579.807 kb on + strand, within frdB at 579.816 kb on + strand, within frdB at 579.816 kb on + strand, within frdB at 579.831 kb on + strand, within frdB at 579.831 kb on + strand, within frdB at 579.844 kb on - strand, within frdB at 579.872 kb on + strand, within frdB at 579.872 kb on + strand, within frdB at 579.872 kb on + strand, within frdB at 579.882 kb on + strand, within frdB at 579.882 kb on + strand, within frdB at 579.882 kb on + strand, within frdB at 579.883 kb on - strand, within frdB at 579.956 kb on + strand at 579.957 kb on - strand at 579.978 kb on + strand at 580.001 kb on - strand at 580.028 kb on - strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.034 kb on + strand at 580.035 kb on - strand at 580.035 kb on - strand at 580.035 kb on - strand at 580.038 kb on + strand at 580.038 kb on + strand at 580.039 kb on - strand at 580.039 kb on - strand at 580.088 kb on + strand, within MCAODC_02865 at 580.088 kb on + strand, within MCAODC_02865 at 580.088 kb on + strand, within MCAODC_02865 at 580.088 kb on + strand, within MCAODC_02865 at 580.088 kb on + strand, within MCAODC_02865 at 580.088 kb on + strand, within MCAODC_02865
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 577,218 + -0.9 577,219 - -2.2 577,264 + -1.2 577,264 + -2.6 577,272 - +0.5 577,276 + -0.1 577,297 + +0.4 577,297 + -1.2 577,345 - +0.5 577,356 + -0.3 577,356 + -1.1 577,356 + -0.1 577,357 - +0.8 577,358 + -1.2 577,358 + -0.7 577,359 - -1.1 577,366 + -0.7 577,366 + +0.0 577,366 + -2.8 577,367 - +0.4 577,367 - +0.6 577,370 + -0.3 577,370 + -1.6 577,371 - -1.0 577,371 - -1.2 577,371 - -1.4 577,371 - -0.3 577,372 + +0.1 577,373 - +0.6 577,389 - -0.3 577,405 - -0.9 577,419 + -0.2 577,419 + -0.2 577,420 - -2.3 577,429 + -0.2 577,429 + -0.4 577,430 - -0.7 577,430 - +1.8 577,499 - -1.1 577,519 + -0.8 577,519 + -0.7 577,520 - -1.0 577,570 + -0.8 577,582 + -0.1 577,679 - frdA MCAODC_02855 0.12 -1.7 577,679 - frdA MCAODC_02855 0.12 +0.9 577,719 + frdA MCAODC_02855 0.14 -0.2 577,719 + frdA MCAODC_02855 0.14 -0.8 577,807 + frdA MCAODC_02855 0.19 -1.1 577,807 + frdA MCAODC_02855 0.19 -1.1 577,807 + frdA MCAODC_02855 0.19 +0.5 577,808 - frdA MCAODC_02855 0.19 -1.1 577,808 - frdA MCAODC_02855 0.19 +0.3 577,838 + frdA MCAODC_02855 0.21 -0.7 577,838 + frdA MCAODC_02855 0.21 -1.2 577,871 + frdA MCAODC_02855 0.22 -1.2 577,871 + frdA MCAODC_02855 0.22 -1.1 577,872 - frdA MCAODC_02855 0.22 -0.7 577,946 + frdA MCAODC_02855 0.26 -0.6 577,947 - frdA MCAODC_02855 0.27 +1.4 577,981 + frdA MCAODC_02855 0.28 +0.0 577,982 - frdA MCAODC_02855 0.28 +0.5 578,036 + frdA MCAODC_02855 0.31 +0.3 578,036 + frdA MCAODC_02855 0.31 -0.6 578,043 - frdA MCAODC_02855 0.32 +1.3 578,043 - frdA MCAODC_02855 0.32 +3.3 578,071 - frdA MCAODC_02855 0.33 -1.8 578,071 - frdA MCAODC_02855 0.33 -0.2 578,160 + frdA MCAODC_02855 0.38 +1.8 578,161 - frdA MCAODC_02855 0.38 +0.2 578,265 + frdA MCAODC_02855 0.44 -0.4 578,310 + frdA MCAODC_02855 0.47 -0.8 578,310 + frdA MCAODC_02855 0.47 -0.1 578,310 + frdA MCAODC_02855 0.47 +0.2 578,311 - frdA MCAODC_02855 0.47 -0.2 578,311 - frdA MCAODC_02855 0.47 -0.2 578,311 - frdA MCAODC_02855 0.47 -1.6 578,311 - frdA MCAODC_02855 0.47 +0.1 578,312 + frdA MCAODC_02855 0.47 -0.7 578,312 + frdA MCAODC_02855 0.47 -1.4 578,481 + frdA MCAODC_02855 0.56 -2.2 578,481 + frdA MCAODC_02855 0.56 -0.4 578,481 + frdA MCAODC_02855 0.56 -0.7 578,481 + frdA MCAODC_02855 0.56 -0.6 578,482 - frdA MCAODC_02855 0.56 +0.3 578,482 - frdA MCAODC_02855 0.56 -0.2 578,482 - frdA MCAODC_02855 0.56 -2.8 578,535 + frdA MCAODC_02855 0.59 +0.8 578,535 + frdA MCAODC_02855 0.59 -0.3 578,535 + frdA MCAODC_02855 0.59 -0.7 578,536 - frdA MCAODC_02855 0.59 +0.3 578,536 - frdA MCAODC_02855 0.59 +1.1 578,536 - frdA MCAODC_02855 0.59 -1.3 578,536 - frdA MCAODC_02855 0.59 +1.0 578,536 - frdA MCAODC_02855 0.59 -1.6 578,536 - frdA MCAODC_02855 0.59 -2.1 578,582 + frdA MCAODC_02855 0.62 -0.4 578,583 - frdA MCAODC_02855 0.62 -0.1 578,583 - frdA MCAODC_02855 0.62 -0.4 578,865 + frdA MCAODC_02855 0.77 +0.6 578,865 + frdA MCAODC_02855 0.77 +0.2 578,866 - frdA MCAODC_02855 0.77 -0.0 578,866 - frdA MCAODC_02855 0.77 +0.3 578,866 - frdA MCAODC_02855 0.77 +0.2 578,866 - frdA MCAODC_02855 0.77 +0.8 578,866 - frdA MCAODC_02855 0.77 -1.2 578,979 + frdA MCAODC_02855 0.84 -2.2 578,979 + frdA MCAODC_02855 0.84 -1.1 578,980 - frdA MCAODC_02855 0.84 +0.5 578,980 - frdA MCAODC_02855 0.84 +1.8 578,980 - frdA MCAODC_02855 0.84 -0.3 579,020 + frdA MCAODC_02855 0.86 -2.1 579,020 + frdA MCAODC_02855 0.86 -2.0 579,021 - frdA MCAODC_02855 0.86 -0.5 579,044 + frdA MCAODC_02855 0.87 +0.4 579,044 + frdA MCAODC_02855 0.87 -1.8 579,044 + frdA MCAODC_02855 0.87 -4.0 579,044 + frdA MCAODC_02855 0.87 -0.2 579,045 - frdA MCAODC_02855 0.87 +0.7 579,045 - frdA MCAODC_02855 0.87 -0.4 579,163 - -1.8 579,179 + -0.6 579,179 + -2.6 579,180 - -0.0 579,180 - +0.2 579,182 + -1.5 579,182 + -0.9 579,182 + +0.4 579,182 + -2.1 579,183 - +0.8 579,183 - -0.7 579,197 + +0.3 579,207 + -0.3 579,307 + -1.2 579,307 + +0.8 579,309 + +0.3 579,309 + -1.3 579,310 - -0.2 579,336 + -0.7 579,346 + frdB MCAODC_02860 0.11 -0.4 579,346 + frdB MCAODC_02860 0.11 +0.8 579,347 - frdB MCAODC_02860 0.11 -2.2 579,347 - frdB MCAODC_02860 0.11 +0.0 579,347 - frdB MCAODC_02860 0.11 +2.0 579,358 + frdB MCAODC_02860 0.12 -1.4 579,358 + frdB MCAODC_02860 0.12 -0.3 579,359 - frdB MCAODC_02860 0.12 -0.0 579,369 + frdB MCAODC_02860 0.14 +0.1 579,369 + frdB MCAODC_02860 0.14 +0.0 579,369 + frdB MCAODC_02860 0.14 +2.0 579,369 + frdB MCAODC_02860 0.14 +0.1 579,377 + frdB MCAODC_02860 0.15 -0.2 579,377 + frdB MCAODC_02860 0.15 -0.9 579,395 - frdB MCAODC_02860 0.17 -0.7 579,444 + frdB MCAODC_02860 0.24 +0.5 579,445 - frdB MCAODC_02860 0.24 -0.7 579,478 - frdB MCAODC_02860 0.29 +2.6 579,501 + frdB MCAODC_02860 0.32 +0.8 579,502 - frdB MCAODC_02860 0.32 -2.1 579,502 - frdB MCAODC_02860 0.32 -0.3 579,502 - frdB MCAODC_02860 0.32 -2.2 579,502 - frdB MCAODC_02860 0.32 +1.8 579,520 + frdB MCAODC_02860 0.34 -0.5 579,531 + frdB MCAODC_02860 0.36 +0.3 579,532 - frdB MCAODC_02860 0.36 +1.5 579,552 + frdB MCAODC_02860 0.39 +0.0 579,552 + frdB MCAODC_02860 0.39 -0.2 579,552 + frdB MCAODC_02860 0.39 +0.8 579,552 + frdB MCAODC_02860 0.39 +0.5 579,552 + frdB MCAODC_02860 0.39 +0.8 579,585 + frdB MCAODC_02860 0.43 -0.9 579,586 - frdB MCAODC_02860 0.43 +0.2 579,625 + frdB MCAODC_02860 0.49 +1.2 579,625 + frdB MCAODC_02860 0.49 -0.9 579,625 + frdB MCAODC_02860 0.49 -0.5 579,625 + frdB MCAODC_02860 0.49 +0.4 579,625 + frdB MCAODC_02860 0.49 +0.4 579,626 - frdB MCAODC_02860 0.49 +0.6 579,626 - frdB MCAODC_02860 0.49 -0.0 579,626 - frdB MCAODC_02860 0.49 -0.2 579,626 - frdB MCAODC_02860 0.49 +0.3 579,626 - frdB MCAODC_02860 0.49 +0.2 579,660 + frdB MCAODC_02860 0.53 +0.4 579,660 + frdB MCAODC_02860 0.53 +0.1 579,661 - frdB MCAODC_02860 0.53 -1.6 579,663 + frdB MCAODC_02860 0.54 -1.2 579,663 + frdB MCAODC_02860 0.54 -0.1 579,663 + frdB MCAODC_02860 0.54 -1.0 579,664 - frdB MCAODC_02860 0.54 +0.2 579,664 - frdB MCAODC_02860 0.54 -0.7 579,664 - frdB MCAODC_02860 0.54 -0.2 579,664 - frdB MCAODC_02860 0.54 +0.4 579,695 - frdB MCAODC_02860 0.58 -1.5 579,789 + frdB MCAODC_02860 0.71 -0.2 579,790 - frdB MCAODC_02860 0.71 +2.0 579,805 + frdB MCAODC_02860 0.73 -1.4 579,806 - frdB MCAODC_02860 0.73 -1.4 579,807 + frdB MCAODC_02860 0.73 +0.7 579,816 + frdB MCAODC_02860 0.75 -0.8 579,816 + frdB MCAODC_02860 0.75 -0.2 579,831 + frdB MCAODC_02860 0.77 -0.1 579,831 + frdB MCAODC_02860 0.77 -0.3 579,844 - frdB MCAODC_02860 0.78 -0.2 579,872 + frdB MCAODC_02860 0.82 +1.0 579,872 + frdB MCAODC_02860 0.82 -0.4 579,872 + frdB MCAODC_02860 0.82 -1.2 579,882 + frdB MCAODC_02860 0.84 -1.0 579,882 + frdB MCAODC_02860 0.84 +1.8 579,882 + frdB MCAODC_02860 0.84 -0.4 579,883 - frdB MCAODC_02860 0.84 -1.4 579,956 + -1.8 579,957 - +0.2 579,978 + +0.9 580,001 - +0.4 580,028 - -0.2 580,034 + -0.8 580,034 + -1.1 580,034 + -0.7 580,034 + -0.1 580,034 + -1.2 580,034 + -0.4 580,034 + +0.8 580,034 + -0.2 580,034 + -0.2 580,034 + -1.6 580,035 - -2.7 580,035 - +0.3 580,035 - -1.1 580,038 + +1.3 580,038 + -1.6 580,039 - +0.1 580,039 - -0.9 580,088 + MCAODC_02865 0.19 -1.2 580,088 + MCAODC_02865 0.19 -0.9 580,088 + MCAODC_02865 0.19 -0.5 580,088 + MCAODC_02865 0.19 -0.6 580,088 + MCAODC_02865 0.19 +0.2 580,088 + MCAODC_02865 0.19 +0.2
Or see this region's nucleotide sequence