Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nnr and queG are separated by 13 nucleotides queG and yjeV overlap by 18 nucleotides yjeV and Gly_trna are separated by 233 nucleotides Gly_trna and Gly_trna are separated by 35 nucleotides Gly_trna and Gly_trna are separated by 36 nucleotides Gly_trna and orn are separated by 210 nucleotides
MCAODC_02795: nnr - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 564,727 to 566,259
nnr
MCAODC_02800: queG - tRNA epoxyqueuosine(34) reductase QueG, at 566,273 to 567,412
queG
MCAODC_02805: yjeV - Uncharacterized protein YjeV, at 567,395 to 567,448
yjeV
MCAODC_02810: Gly_trna - tRNA-Gly(gcc), at 567,682 to 567,757
_trna
MCAODC_02815: Gly_trna - tRNA-Gly(gcc), at 567,793 to 567,868
_trna
MCAODC_02820: Gly_trna - tRNA-Gly(gcc), at 567,905 to 567,980
_trna
MCAODC_02825: orn - oligoribonuclease, at 568,191 to 568,736
orn
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 565.333 kb on - strand, within nnr at 565.344 kb on + strand, within nnr at 565.344 kb on + strand, within nnr at 565.462 kb on - strand, within nnr at 565.467 kb on + strand, within nnr at 565.524 kb on + strand, within nnr at 565.695 kb on + strand, within nnr at 565.695 kb on + strand, within nnr at 565.803 kb on + strand, within nnr at 565.804 kb on - strand, within nnr at 565.905 kb on + strand, within nnr at 565.905 kb on + strand, within nnr at 566.045 kb on + strand, within nnr at 566.045 kb on + strand, within nnr at 566.046 kb on - strand, within nnr at 566.046 kb on - strand, within nnr at 566.062 kb on - strand, within nnr at 566.064 kb on + strand, within nnr at 566.159 kb on + strand at 566.159 kb on + strand at 566.160 kb on - strand at 566.160 kb on - strand at 566.237 kb on - strand at 566.238 kb on + strand at 566.238 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.239 kb on - strand at 566.242 kb on + strand at 566.243 kb on - strand at 566.243 kb on - strand at 566.262 kb on + strand at 566.262 kb on + strand at 566.262 kb on + strand at 566.263 kb on - strand at 566.263 kb on - strand at 566.349 kb on + strand at 566.349 kb on + strand at 566.349 kb on + strand at 566.350 kb on - strand at 566.350 kb on - strand at 566.353 kb on + strand at 566.353 kb on + strand at 566.353 kb on + strand at 566.353 kb on + strand at 566.354 kb on - strand at 566.354 kb on - strand at 566.354 kb on - strand at 566.354 kb on - strand at 566.357 kb on - strand at 566.415 kb on - strand, within queG at 566.449 kb on + strand, within queG at 566.450 kb on - strand, within queG at 566.475 kb on + strand, within queG at 566.475 kb on + strand, within queG at 566.476 kb on - strand, within queG at 566.476 kb on - strand, within queG at 566.516 kb on + strand, within queG at 566.516 kb on + strand, within queG at 566.516 kb on + strand, within queG at 566.516 kb on + strand, within queG at 566.517 kb on - strand, within queG at 566.571 kb on - strand, within queG at 566.575 kb on + strand, within queG at 566.698 kb on + strand, within queG at 566.746 kb on + strand, within queG at 566.747 kb on - strand, within queG at 566.759 kb on - strand, within queG at 566.759 kb on - strand, within queG at 566.759 kb on - strand, within queG at 566.759 kb on - strand, within queG at 566.870 kb on - strand, within queG at 566.906 kb on + strand, within queG at 566.907 kb on - strand, within queG at 566.907 kb on - strand, within queG at 566.907 kb on - strand, within queG at 566.908 kb on + strand, within queG at 566.908 kb on + strand, within queG at 566.908 kb on + strand, within queG at 566.909 kb on - strand, within queG at 566.929 kb on + strand, within queG at 566.929 kb on + strand, within queG at 566.937 kb on - strand, within queG at 566.998 kb on + strand, within queG at 566.998 kb on + strand, within queG at 567.002 kb on + strand, within queG at 567.002 kb on + strand, within queG at 567.003 kb on - strand, within queG at 567.003 kb on - strand, within queG at 567.003 kb on - strand, within queG at 567.025 kb on + strand, within queG at 567.025 kb on + strand, within queG at 567.026 kb on - strand, within queG at 567.026 kb on - strand, within queG at 567.026 kb on - strand, within queG at 567.026 kb on - strand, within queG at 567.058 kb on + strand, within queG at 567.083 kb on - strand, within queG at 567.083 kb on - strand, within queG at 567.083 kb on - strand, within queG at 567.114 kb on + strand, within queG at 567.114 kb on + strand, within queG at 567.173 kb on - strand, within queG at 567.174 kb on + strand, within queG at 567.175 kb on - strand, within queG at 567.175 kb on - strand, within queG at 567.196 kb on + strand, within queG at 567.196 kb on + strand, within queG at 567.196 kb on + strand, within queG at 567.197 kb on - strand, within queG at 567.199 kb on + strand, within queG at 567.200 kb on - strand, within queG at 567.214 kb on - strand, within queG at 567.294 kb on + strand, within queG at 567.294 kb on + strand, within queG at 567.294 kb on + strand, within queG at 567.294 kb on + strand, within queG at 567.295 kb on - strand, within queG at 567.295 kb on - strand, within queG at 567.295 kb on - strand, within queG at 567.339 kb on + strand at 567.381 kb on + strand at 567.570 kb on - strand at 567.640 kb on - strand at 567.776 kb on - strand at 567.983 kb on - strand at 567.986 kb on - strand at 567.986 kb on - strand at 567.990 kb on - strand at 568.172 kb on + strand at 568.173 kb on - strand at 568.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 565,333 - nnr MCAODC_02795 0.40 -0.1 565,344 + nnr MCAODC_02795 0.40 +0.8 565,344 + nnr MCAODC_02795 0.40 -1.0 565,462 - nnr MCAODC_02795 0.48 -1.4 565,467 + nnr MCAODC_02795 0.48 +1.3 565,524 + nnr MCAODC_02795 0.52 +1.0 565,695 + nnr MCAODC_02795 0.63 -0.8 565,695 + nnr MCAODC_02795 0.63 +0.2 565,803 + nnr MCAODC_02795 0.70 +0.3 565,804 - nnr MCAODC_02795 0.70 +0.8 565,905 + nnr MCAODC_02795 0.77 -0.0 565,905 + nnr MCAODC_02795 0.77 -0.1 566,045 + nnr MCAODC_02795 0.86 +0.6 566,045 + nnr MCAODC_02795 0.86 +0.0 566,046 - nnr MCAODC_02795 0.86 -0.7 566,046 - nnr MCAODC_02795 0.86 +2.3 566,062 - nnr MCAODC_02795 0.87 -0.5 566,064 + nnr MCAODC_02795 0.87 -0.5 566,159 + +0.3 566,159 + -0.6 566,160 - -0.9 566,160 - -1.2 566,237 - -2.1 566,238 + -1.0 566,238 - -1.5 566,239 - -0.0 566,239 - -1.0 566,239 - +0.8 566,239 - +1.8 566,239 - -2.9 566,239 - +1.0 566,239 - +0.8 566,242 + -0.2 566,243 - -0.9 566,243 - +0.8 566,262 + +0.3 566,262 + -0.1 566,262 + -0.0 566,263 - +0.9 566,263 - +0.0 566,349 + -1.2 566,349 + +1.0 566,349 + +0.6 566,350 - -0.4 566,350 - +1.1 566,353 + +0.9 566,353 + +0.8 566,353 + -0.0 566,353 + -2.8 566,354 - +0.2 566,354 - -0.3 566,354 - -0.8 566,354 - -0.8 566,357 - -1.4 566,415 - queG MCAODC_02800 0.12 +0.8 566,449 + queG MCAODC_02800 0.15 -0.6 566,450 - queG MCAODC_02800 0.16 +0.9 566,475 + queG MCAODC_02800 0.18 -0.8 566,475 + queG MCAODC_02800 0.18 -0.2 566,476 - queG MCAODC_02800 0.18 -2.8 566,476 - queG MCAODC_02800 0.18 -0.8 566,516 + queG MCAODC_02800 0.21 +1.0 566,516 + queG MCAODC_02800 0.21 +1.0 566,516 + queG MCAODC_02800 0.21 -0.4 566,516 + queG MCAODC_02800 0.21 -0.0 566,517 - queG MCAODC_02800 0.21 +1.3 566,571 - queG MCAODC_02800 0.26 +0.3 566,575 + queG MCAODC_02800 0.26 +0.1 566,698 + queG MCAODC_02800 0.37 +0.3 566,746 + queG MCAODC_02800 0.41 +0.8 566,747 - queG MCAODC_02800 0.42 -1.3 566,759 - queG MCAODC_02800 0.43 +1.0 566,759 - queG MCAODC_02800 0.43 -0.8 566,759 - queG MCAODC_02800 0.43 +1.2 566,759 - queG MCAODC_02800 0.43 -0.6 566,870 - queG MCAODC_02800 0.52 -0.1 566,906 + queG MCAODC_02800 0.56 +1.3 566,907 - queG MCAODC_02800 0.56 -0.2 566,907 - queG MCAODC_02800 0.56 -1.1 566,907 - queG MCAODC_02800 0.56 +0.2 566,908 + queG MCAODC_02800 0.56 +0.3 566,908 + queG MCAODC_02800 0.56 +1.6 566,908 + queG MCAODC_02800 0.56 +0.2 566,909 - queG MCAODC_02800 0.56 -0.4 566,929 + queG MCAODC_02800 0.58 -0.1 566,929 + queG MCAODC_02800 0.58 -0.0 566,937 - queG MCAODC_02800 0.58 +0.2 566,998 + queG MCAODC_02800 0.64 -0.4 566,998 + queG MCAODC_02800 0.64 -0.8 567,002 + queG MCAODC_02800 0.64 +0.2 567,002 + queG MCAODC_02800 0.64 -1.7 567,003 - queG MCAODC_02800 0.64 -3.0 567,003 - queG MCAODC_02800 0.64 +0.1 567,003 - queG MCAODC_02800 0.64 +2.0 567,025 + queG MCAODC_02800 0.66 +0.7 567,025 + queG MCAODC_02800 0.66 -0.6 567,026 - queG MCAODC_02800 0.66 +0.8 567,026 - queG MCAODC_02800 0.66 +0.8 567,026 - queG MCAODC_02800 0.66 -0.9 567,026 - queG MCAODC_02800 0.66 +0.5 567,058 + queG MCAODC_02800 0.69 -2.1 567,083 - queG MCAODC_02800 0.71 -1.2 567,083 - queG MCAODC_02800 0.71 +0.8 567,083 - queG MCAODC_02800 0.71 -1.2 567,114 + queG MCAODC_02800 0.74 -0.2 567,114 + queG MCAODC_02800 0.74 -0.2 567,173 - queG MCAODC_02800 0.79 -0.4 567,174 + queG MCAODC_02800 0.79 +0.2 567,175 - queG MCAODC_02800 0.79 -1.1 567,175 - queG MCAODC_02800 0.79 +0.2 567,196 + queG MCAODC_02800 0.81 -1.7 567,196 + queG MCAODC_02800 0.81 +0.2 567,196 + queG MCAODC_02800 0.81 +2.3 567,197 - queG MCAODC_02800 0.81 +0.3 567,199 + queG MCAODC_02800 0.81 +1.2 567,200 - queG MCAODC_02800 0.81 -2.0 567,214 - queG MCAODC_02800 0.83 -0.5 567,294 + queG MCAODC_02800 0.90 -0.4 567,294 + queG MCAODC_02800 0.90 +1.2 567,294 + queG MCAODC_02800 0.90 +0.1 567,294 + queG MCAODC_02800 0.90 +0.8 567,295 - queG MCAODC_02800 0.90 +0.2 567,295 - queG MCAODC_02800 0.90 -0.9 567,295 - queG MCAODC_02800 0.90 -0.2 567,339 + +1.8 567,381 + -0.6 567,570 - -0.8 567,640 - +1.2 567,776 - -0.6 567,983 - -1.6 567,986 - +0.8 567,986 - -1.7 567,990 - +0.2 568,172 + +1.1 568,173 - +3.8 568,203 - +1.2
Or see this region's nucleotide sequence