Strain Fitness in Escherichia coli ECRC101 around MCAODC_01945

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthsdS and symE are separated by 220 nucleotidessymE and MCAODC_01950 are separated by 46 nucleotides MCAODC_01935: hsdS - restriction endonuclease subunit S, at 376,034 to 377,788 hsdS MCAODC_01945: symE - endoribonuclease SymE, at 378,009 to 378,350 symE MCAODC_01950: MCAODC_01950 - DUF1524 domain-containing protein, at 378,397 to 379,560 _01950 Position (kb) 378 379Strain fitness (log2 ratio) -2 -1 0 1 2 3at 377.029 kb on - strand, within hsdSat 377.277 kb on + strand, within hsdSat 377.292 kb on + strand, within hsdSat 377.426 kb on - strand, within hsdSat 377.441 kb on - strand, within hsdSat 377.441 kb on - strand, within hsdSat 377.445 kb on + strand, within hsdSat 377.462 kb on + strand, within hsdSat 377.463 kb on - strand, within hsdSat 377.465 kb on - strand, within hsdSat 377.539 kb on + strand, within hsdSat 377.700 kb on + strandat 377.701 kb on - strandat 377.701 kb on - strandat 377.878 kb on - strandat 377.923 kb on + strandat 377.924 kb on - strandat 377.988 kb on + strandat 377.994 kb on + strandat 378.001 kb on + strandat 378.008 kb on + strandat 378.181 kb on + strand, within symEat 378.182 kb on - strand, within symEat 378.182 kb on - strand, within symEat 378.206 kb on + strand, within symEat 378.206 kb on + strand, within symEat 378.207 kb on - strand, within symEat 378.291 kb on - strand, within symEat 378.351 kb on + strandat 378.351 kb on + strandat 378.400 kb on + strandat 378.401 kb on - strandat 378.443 kb on - strandat 378.455 kb on + strandat 378.456 kb on - strandat 378.571 kb on - strand, within MCAODC_01950at 378.573 kb on + strand, within MCAODC_01950at 378.573 kb on + strand, within MCAODC_01950at 378.574 kb on - strand, within MCAODC_01950at 378.642 kb on + strand, within MCAODC_01950at 378.642 kb on + strand, within MCAODC_01950at 378.643 kb on - strand, within MCAODC_01950at 378.643 kb on - strand, within MCAODC_01950at 378.643 kb on - strand, within MCAODC_01950at 378.644 kb on + strand, within MCAODC_01950at 378.644 kb on + strand, within MCAODC_01950at 378.645 kb on - strand, within MCAODC_01950at 378.645 kb on - strand, within MCAODC_01950at 378.645 kb on - strand, within MCAODC_01950at 378.750 kb on - strand, within MCAODC_01950at 378.765 kb on - strand, within MCAODC_01950at 378.802 kb on + strand, within MCAODC_01950at 378.943 kb on - strand, within MCAODC_01950at 379.000 kb on - strand, within MCAODC_01950at 379.000 kb on - strand, within MCAODC_01950at 379.000 kb on - strand, within MCAODC_01950at 379.010 kb on - strand, within MCAODC_01950at 379.029 kb on + strand, within MCAODC_01950at 379.030 kb on - strand, within MCAODC_01950at 379.030 kb on - strand, within MCAODC_01950at 379.030 kb on - strand, within MCAODC_01950at 379.113 kb on + strand, within MCAODC_01950at 379.114 kb on - strand, within MCAODC_01950at 379.116 kb on + strand, within MCAODC_01950at 379.117 kb on - strand, within MCAODC_01950at 379.181 kb on + strand, within MCAODC_01950at 379.181 kb on + strand, within MCAODC_01950at 379.260 kb on - strand, within MCAODC_01950at 379.326 kb on - strand, within MCAODC_01950

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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377,029 - hsdS MCAODC_01935 0.57 -0.9
377,277 + hsdS MCAODC_01935 0.71 -1.0
377,292 + hsdS MCAODC_01935 0.72 +0.4
377,426 - hsdS MCAODC_01935 0.79 +1.2
377,441 - hsdS MCAODC_01935 0.80 +2.4
377,441 - hsdS MCAODC_01935 0.80 +0.8
377,445 + hsdS MCAODC_01935 0.80 +1.8
377,462 + hsdS MCAODC_01935 0.81 +0.4
377,463 - hsdS MCAODC_01935 0.81 -0.6
377,465 - hsdS MCAODC_01935 0.82 +1.5
377,539 + hsdS MCAODC_01935 0.86 -1.0
377,700 + +0.0
377,701 - +1.0
377,701 - +0.5
377,878 - +0.2
377,923 + -1.4
377,924 - +0.7
377,988 + +1.8
377,994 + +0.6
378,001 + -0.5
378,008 + -0.6
378,181 + symE MCAODC_01945 0.50 -1.6
378,182 - symE MCAODC_01945 0.51 +1.0
378,182 - symE MCAODC_01945 0.51 -0.2
378,206 + symE MCAODC_01945 0.58 +2.8
378,206 + symE MCAODC_01945 0.58 +0.1
378,207 - symE MCAODC_01945 0.58 -0.7
378,291 - symE MCAODC_01945 0.82 +0.4
378,351 + +0.8
378,351 + -0.3
378,400 + -0.4
378,401 - +0.2
378,443 - -1.3
378,455 + +1.4
378,456 - -0.0
378,571 - MCAODC_01950 0.15 +0.7
378,573 + MCAODC_01950 0.15 -1.7
378,573 + MCAODC_01950 0.15 +0.4
378,574 - MCAODC_01950 0.15 -0.4
378,642 + MCAODC_01950 0.21 -1.2
378,642 + MCAODC_01950 0.21 -0.6
378,643 - MCAODC_01950 0.21 +0.1
378,643 - MCAODC_01950 0.21 -0.3
378,643 - MCAODC_01950 0.21 +0.4
378,644 + MCAODC_01950 0.21 -0.1
378,644 + MCAODC_01950 0.21 -0.2
378,645 - MCAODC_01950 0.21 -2.0
378,645 - MCAODC_01950 0.21 +0.4
378,645 - MCAODC_01950 0.21 +2.0
378,750 - MCAODC_01950 0.30 -0.4
378,765 - MCAODC_01950 0.32 +2.4
378,802 + MCAODC_01950 0.35 -0.0
378,943 - MCAODC_01950 0.47 -1.2
379,000 - MCAODC_01950 0.52 -0.9
379,000 - MCAODC_01950 0.52 -0.9
379,000 - MCAODC_01950 0.52 -0.7
379,010 - MCAODC_01950 0.53 +0.8
379,029 + MCAODC_01950 0.54 -0.8
379,030 - MCAODC_01950 0.54 +0.4
379,030 - MCAODC_01950 0.54 +1.6
379,030 - MCAODC_01950 0.54 +1.0
379,113 + MCAODC_01950 0.62 -2.4
379,114 - MCAODC_01950 0.62 -0.8
379,116 + MCAODC_01950 0.62 +1.8
379,117 - MCAODC_01950 0.62 +1.2
379,181 + MCAODC_01950 0.67 -0.6
379,181 + MCAODC_01950 0.67 -0.8
379,260 - MCAODC_01950 0.74 -0.6
379,326 - MCAODC_01950 0.80 +1.8

Or see this region's nucleotide sequence