Strain Fitness in Escherichia coli ECRC101 around MCAODC_00970
Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | EV240 |
---|---|---|---|---|---|
remove | |||||
173,253 | + | gcd | MCAODC_00965 | 0.69 | +0.1 |
173,545 | + | gcd | MCAODC_00965 | 0.81 | -0.2 |
173,545 | + | gcd | MCAODC_00965 | 0.81 | -0.1 |
173,545 | + | gcd | MCAODC_00965 | 0.81 | -1.6 |
173,546 | - | gcd | MCAODC_00965 | 0.81 | -0.8 |
173,546 | - | gcd | MCAODC_00965 | 0.81 | +0.2 |
173,558 | - | gcd | MCAODC_00965 | 0.81 | -0.4 |
173,558 | - | gcd | MCAODC_00965 | 0.81 | +1.0 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | -1.2 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | +0.5 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | -1.2 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | +0.1 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | -0.3 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | +0.4 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | -0.3 |
173,604 | + | gcd | MCAODC_00965 | 0.83 | +2.2 |
173,605 | - | gcd | MCAODC_00965 | 0.83 | +0.1 |
173,605 | - | gcd | MCAODC_00965 | 0.83 | +0.9 |
173,605 | - | gcd | MCAODC_00965 | 0.83 | +1.7 |
173,623 | + | gcd | MCAODC_00965 | 0.84 | +0.1 |
173,623 | + | gcd | MCAODC_00965 | 0.84 | -0.3 |
173,624 | - | gcd | MCAODC_00965 | 0.84 | +0.7 |
173,624 | - | gcd | MCAODC_00965 | 0.84 | +0.5 |
173,624 | - | gcd | MCAODC_00965 | 0.84 | +1.2 |
173,625 | + | gcd | MCAODC_00965 | 0.84 | -0.4 |
173,626 | - | gcd | MCAODC_00965 | 0.84 | +0.1 |
173,626 | - | gcd | MCAODC_00965 | 0.84 | -0.6 |
173,626 | - | gcd | MCAODC_00965 | 0.84 | +1.3 |
173,649 | + | gcd | MCAODC_00965 | 0.85 | -2.4 |
173,649 | + | gcd | MCAODC_00965 | 0.85 | +0.7 |
173,650 | - | gcd | MCAODC_00965 | 0.85 | +0.5 |
173,650 | - | gcd | MCAODC_00965 | 0.85 | -0.1 |
173,650 | - | gcd | MCAODC_00965 | 0.85 | +0.4 |
173,673 | + | gcd | MCAODC_00965 | 0.86 | -0.9 |
173,674 | - | gcd | MCAODC_00965 | 0.86 | -1.1 |
173,679 | + | gcd | MCAODC_00965 | 0.86 | +0.7 |
173,694 | + | gcd | MCAODC_00965 | 0.87 | +1.1 |
173,694 | + | gcd | MCAODC_00965 | 0.87 | +1.4 |
173,694 | + | gcd | MCAODC_00965 | 0.87 | +0.5 |
173,694 | + | gcd | MCAODC_00965 | 0.87 | -0.4 |
173,694 | + | gcd | MCAODC_00965 | 0.87 | +0.2 |
173,695 | - | gcd | MCAODC_00965 | 0.87 | +0.1 |
173,695 | - | gcd | MCAODC_00965 | 0.87 | -0.8 |
173,695 | - | gcd | MCAODC_00965 | 0.87 | -1.2 |
173,736 | + | gcd | MCAODC_00965 | 0.89 | -0.5 |
173,736 | + | gcd | MCAODC_00965 | 0.89 | -0.2 |
173,794 | - | +0.3 | |||
173,802 | + | -0.5 | |||
173,802 | + | +2.7 | |||
173,803 | - | -1.6 | |||
173,803 | - | -0.1 | |||
173,803 | - | +0.3 | |||
173,806 | + | +0.1 | |||
173,806 | + | +0.1 | |||
173,806 | + | -1.5 | |||
173,806 | + | -1.2 | |||
173,807 | - | -0.5 | |||
173,807 | - | -1.8 | |||
173,807 | - | +0.5 | |||
173,807 | - | -0.4 | |||
173,818 | + | +0.5 | |||
173,818 | + | +0.2 | |||
173,819 | - | +1.0 | |||
173,819 | - | +0.7 | |||
173,890 | + | -0.3 | |||
173,891 | - | +0.2 | |||
173,891 | - | -0.5 | |||
173,891 | - | -1.9 | |||
173,891 | - | +0.2 | |||
173,891 | - | -0.7 | |||
173,891 | - | -0.5 | |||
173,891 | - | -2.8 | |||
173,904 | + | -1.0 | |||
173,904 | + | +0.1 | |||
173,911 | + | -1.3 | |||
173,911 | + | -0.0 | |||
173,911 | + | -1.8 | |||
173,912 | - | +0.0 | |||
173,912 | - | -0.3 | |||
173,912 | - | -1.5 | |||
173,912 | - | +0.9 | |||
173,912 | - | +0.7 | |||
173,965 | + | +0.1 | |||
173,965 | + | -0.9 | |||
173,965 | + | -2.1 | |||
173,965 | + | +1.8 | |||
173,965 | + | +2.7 | |||
173,965 | + | -0.2 | |||
173,965 | + | -0.4 | |||
173,965 | + | -1.9 | |||
173,966 | - | -2.7 | |||
173,966 | - | +0.5 | |||
173,966 | - | +0.5 | |||
173,966 | - | +0.7 | |||
173,966 | - | -0.2 | |||
173,966 | - | +0.1 | |||
173,966 | - | +0.2 | |||
173,967 | + | +0.2 | |||
173,967 | + | +1.7 | |||
173,967 | + | +0.1 | |||
173,968 | - | -1.0 | |||
173,977 | + | +0.1 | |||
173,977 | + | -2.0 | |||
174,001 | + | -0.6 | |||
174,001 | + | -1.5 | |||
174,001 | + | +0.7 | |||
174,001 | + | -0.3 | |||
174,002 | - | +0.1 | |||
174,185 | + | +0.9 | |||
174,207 | - | -0.7 | |||
174,213 | + | -0.0 | |||
174,213 | + | -0.9 | |||
174,267 | + | -0.9 | |||
174,267 | + | +1.7 | |||
174,267 | + | -0.3 | |||
174,268 | - | +1.1 | |||
174,268 | - | -1.2 | |||
174,269 | + | -0.3 | |||
174,269 | + | +0.4 | |||
174,269 | + | +1.0 | |||
174,269 | + | -1.6 | |||
174,269 | + | +0.9 | |||
174,269 | + | -0.4 | |||
174,269 | + | -0.3 | |||
174,269 | + | -0.4 | |||
174,269 | + | -0.2 | |||
174,269 | + | -0.2 | |||
174,269 | + | +0.4 | |||
174,269 | + | -0.0 | |||
174,270 | - | +0.7 | |||
174,270 | - | +1.7 | |||
174,270 | - | +1.0 | |||
174,270 | - | -0.6 | |||
174,270 | - | -0.9 | |||
174,270 | - | +1.1 | |||
174,270 | - | +0.1 | |||
174,270 | - | -1.3 | |||
174,270 | - | -0.2 | |||
174,270 | - | -0.9 | |||
174,270 | - | +1.1 | |||
174,270 | - | +1.7 | |||
174,270 | - | -0.4 | |||
174,270 | - | -0.1 | |||
174,270 | - | -1.2 | |||
174,270 | - | -0.8 | |||
174,270 | - | +1.1 | |||
174,270 | - | +0.4 | |||
174,298 | - | -0.2 | |||
174,331 | + | +3.7 | |||
174,331 | + | +0.7 | |||
174,332 | - | +0.1 | |||
174,332 | - | -0.7 | |||
174,342 | + | -1.3 | |||
174,397 | - | cueO | MCAODC_00970 | 0.12 | -2.4 |
174,456 | + | cueO | MCAODC_00970 | 0.16 | +0.3 |
174,457 | - | cueO | MCAODC_00970 | 0.16 | -0.6 |
174,470 | + | cueO | MCAODC_00970 | 0.17 | -0.0 |
174,501 | + | cueO | MCAODC_00970 | 0.19 | -0.7 |
174,501 | + | cueO | MCAODC_00970 | 0.19 | +0.2 |
174,501 | + | cueO | MCAODC_00970 | 0.19 | +1.3 |
174,501 | + | cueO | MCAODC_00970 | 0.19 | +1.0 |
174,502 | - | cueO | MCAODC_00970 | 0.19 | -0.3 |
174,532 | - | cueO | MCAODC_00970 | 0.21 | -0.6 |
174,571 | - | cueO | MCAODC_00970 | 0.24 | -0.9 |
174,579 | + | cueO | MCAODC_00970 | 0.24 | +0.1 |
174,580 | - | cueO | MCAODC_00970 | 0.24 | -0.3 |
174,644 | + | cueO | MCAODC_00970 | 0.28 | -0.9 |
174,676 | - | cueO | MCAODC_00970 | 0.30 | -0.4 |
174,693 | + | cueO | MCAODC_00970 | 0.31 | +0.4 |
174,736 | + | cueO | MCAODC_00970 | 0.34 | -1.1 |
174,737 | - | cueO | MCAODC_00970 | 0.34 | -1.1 |
174,751 | - | cueO | MCAODC_00970 | 0.35 | +0.4 |
174,751 | - | cueO | MCAODC_00970 | 0.35 | -1.7 |
174,754 | + | cueO | MCAODC_00970 | 0.35 | -2.8 |
174,754 | + | cueO | MCAODC_00970 | 0.35 | -1.5 |
174,754 | + | cueO | MCAODC_00970 | 0.35 | +0.7 |
174,755 | - | cueO | MCAODC_00970 | 0.35 | -0.0 |
174,755 | - | cueO | MCAODC_00970 | 0.35 | -0.4 |
174,755 | - | cueO | MCAODC_00970 | 0.35 | +1.6 |
174,755 | - | cueO | MCAODC_00970 | 0.35 | +0.4 |
174,755 | - | cueO | MCAODC_00970 | 0.35 | +0.3 |
174,783 | + | cueO | MCAODC_00970 | 0.37 | -2.3 |
174,783 | + | cueO | MCAODC_00970 | 0.37 | -2.0 |
174,783 | + | cueO | MCAODC_00970 | 0.37 | -1.1 |
174,784 | - | cueO | MCAODC_00970 | 0.37 | -0.1 |
174,784 | - | cueO | MCAODC_00970 | 0.37 | -1.6 |
174,786 | + | cueO | MCAODC_00970 | 0.37 | +0.1 |
174,786 | + | cueO | MCAODC_00970 | 0.37 | -1.6 |
174,787 | - | cueO | MCAODC_00970 | 0.38 | -0.3 |
174,787 | - | cueO | MCAODC_00970 | 0.38 | +0.7 |
174,992 | + | cueO | MCAODC_00970 | 0.51 | -0.2 |
174,993 | - | cueO | MCAODC_00970 | 0.51 | -0.6 |
175,039 | - | cueO | MCAODC_00970 | 0.54 | -0.6 |
175,039 | - | cueO | MCAODC_00970 | 0.54 | +0.2 |
175,039 | - | cueO | MCAODC_00970 | 0.54 | +0.1 |
175,246 | + | cueO | MCAODC_00970 | 0.67 | +0.4 |
175,348 | - | cueO | MCAODC_00970 | 0.74 | +1.3 |
175,401 | + | cueO | MCAODC_00970 | 0.77 | +0.7 |
175,402 | - | cueO | MCAODC_00970 | 0.77 | -1.0 |
175,482 | + | cueO | MCAODC_00970 | 0.82 | -2.4 |
175,482 | + | cueO | MCAODC_00970 | 0.82 | +0.2 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +0.7 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +0.2 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +0.4 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +0.2 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | -0.5 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | -0.7 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +2.3 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | +1.4 |
175,484 | + | cueO | MCAODC_00970 | 0.82 | -1.2 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | -0.4 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | -0.9 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | +0.0 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | +1.3 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | -0.1 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | -1.9 |
175,485 | - | cueO | MCAODC_00970 | 0.83 | +0.7 |
175,488 | + | cueO | MCAODC_00970 | 0.83 | -0.2 |
175,488 | + | cueO | MCAODC_00970 | 0.83 | -0.3 |
175,488 | + | cueO | MCAODC_00970 | 0.83 | +0.5 |
175,489 | - | cueO | MCAODC_00970 | 0.83 | +0.1 |
175,517 | - | cueO | MCAODC_00970 | 0.85 | -1.9 |
175,517 | - | cueO | MCAODC_00970 | 0.85 | -1.3 |
175,517 | - | cueO | MCAODC_00970 | 0.85 | +0.6 |
175,548 | + | cueO | MCAODC_00970 | 0.87 | -0.5 |
175,550 | + | cueO | MCAODC_00970 | 0.87 | -0.6 |
175,550 | + | cueO | MCAODC_00970 | 0.87 | -0.0 |
175,550 | + | cueO | MCAODC_00970 | 0.87 | -0.0 |
175,560 | + | cueO | MCAODC_00970 | 0.87 | -1.1 |
175,560 | + | cueO | MCAODC_00970 | 0.87 | -0.2 |
175,560 | + | cueO | MCAODC_00970 | 0.87 | -0.0 |
175,561 | - | cueO | MCAODC_00970 | 0.87 | +1.7 |
175,561 | - | cueO | MCAODC_00970 | 0.87 | -0.3 |
175,584 | + | cueO | MCAODC_00970 | 0.89 | +0.1 |
175,584 | + | cueO | MCAODC_00970 | 0.89 | +0.4 |
175,585 | - | cueO | MCAODC_00970 | 0.89 | -1.2 |
175,585 | - | cueO | MCAODC_00970 | 0.89 | -1.2 |
175,602 | + | -0.2 | |||
175,603 | - | -1.4 | |||
175,603 | - | +0.4 | |||
175,606 | + | +0.0 | |||
175,607 | - | +0.3 | |||
175,607 | - | -0.6 | |||
175,755 | + | +0.6 | |||
175,755 | + | +0.3 | |||
175,755 | + | -0.1 | |||
175,756 | - | -1.0 | |||
175,756 | - | -0.2 | |||
175,756 | - | -1.7 | |||
175,759 | + | +0.5 | |||
175,759 | + | -0.5 | |||
175,773 | + | +1.5 | |||
175,773 | + | -0.9 | |||
175,773 | + | +1.7 | |||
175,773 | + | -0.2 | |||
175,774 | - | +0.6 | |||
175,774 | - | -0.9 | |||
175,805 | + | -0.7 | |||
175,806 | - | +2.3 | |||
175,847 | + | -0.6 | |||
175,847 | + | +1.2 | |||
175,857 | + | -0.7 | |||
175,858 | - | +1.7 | |||
175,887 | - | -1.0 | |||
175,894 | - | -0.8 | |||
175,902 | + | +0.8 | |||
175,903 | - | +0.5 | |||
175,903 | - | +0.1 | |||
176,010 | + | yacC | MCAODC_00975 | 0.16 | +1.7 |
176,010 | + | yacC | MCAODC_00975 | 0.16 | -1.0 |
176,011 | - | yacC | MCAODC_00975 | 0.17 | -0.3 |
176,011 | - | yacC | MCAODC_00975 | 0.17 | +1.0 |
176,011 | - | yacC | MCAODC_00975 | 0.17 | +0.8 |
176,069 | + | yacC | MCAODC_00975 | 0.35 | -1.0 |
176,069 | + | yacC | MCAODC_00975 | 0.35 | -1.6 |
176,073 | + | yacC | MCAODC_00975 | 0.37 | -0.6 |
176,133 | + | yacC | MCAODC_00975 | 0.56 | -0.5 |
176,133 | + | yacC | MCAODC_00975 | 0.56 | +1.5 |
176,138 | - | yacC | MCAODC_00975 | 0.58 | +0.2 |
176,138 | - | yacC | MCAODC_00975 | 0.58 | +1.7 |
176,138 | - | yacC | MCAODC_00975 | 0.58 | +0.7 |
176,177 | - | yacC | MCAODC_00975 | 0.70 | +1.2 |
176,243 | + | +0.1 | |||
176,243 | + | -0.1 | |||
176,258 | - | +2.0 | |||
176,267 | - | +0.3 | |||
176,319 | + | +0.6 | |||
176,319 | + | -0.9 | |||
176,320 | - | -0.8 | |||
176,320 | - | -0.4 | |||
176,324 | - | -0.1 | |||
176,324 | - | +1.3 | |||
176,327 | - | +2.4 | |||
176,327 | - | -0.9 | |||
176,327 | - | -0.3 | |||
176,365 | + | -0.1 | |||
176,406 | - | -1.4 | |||
176,436 | - | +1.2 | |||
176,439 | + | -0.9 | |||
176,440 | - | +1.4 | |||
176,449 | + | +0.4 | |||
176,450 | - | +2.0 | |||
176,528 | + | speE | MCAODC_00980 | 0.18 | +1.0 |
176,531 | + | speE | MCAODC_00980 | 0.18 | +1.9 |
176,531 | + | speE | MCAODC_00980 | 0.18 | -0.8 |
176,531 | + | speE | MCAODC_00980 | 0.18 | -0.0 |
176,531 | + | speE | MCAODC_00980 | 0.18 | +2.4 |
176,556 | + | speE | MCAODC_00980 | 0.21 | -0.9 |
176,556 | + | speE | MCAODC_00980 | 0.21 | +1.4 |
176,557 | - | speE | MCAODC_00980 | 0.21 | -1.6 |
176,560 | + | speE | MCAODC_00980 | 0.21 | +1.1 |
176,560 | + | speE | MCAODC_00980 | 0.21 | +1.6 |
176,561 | - | speE | MCAODC_00980 | 0.22 | +0.7 |
176,668 | - | speE | MCAODC_00980 | 0.34 | +0.7 |
176,731 | + | speE | MCAODC_00980 | 0.41 | -0.3 |
176,731 | + | speE | MCAODC_00980 | 0.41 | +1.9 |
176,732 | - | speE | MCAODC_00980 | 0.41 | +1.2 |
176,735 | + | speE | MCAODC_00980 | 0.42 | -0.5 |
176,736 | - | speE | MCAODC_00980 | 0.42 | -0.9 |
Or see this region's nucleotide sequence