Strain Fitness in Escherichia fergusonii Becca around EFB2_04715

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,964,639	+		EFB2_04714	0.31	+0.2
4,964,640	-		EFB2_04714	0.31	+0.3
4,964,681	+		EFB2_04714	0.34	-0.5
4,964,681	+		EFB2_04714	0.34	-0.8
4,964,681	+		EFB2_04714	0.34	+0.3
4,964,681	+		EFB2_04714	0.34	-1.1
4,964,681	+		EFB2_04714	0.34	-0.1
4,964,681	+		EFB2_04714	0.34	-0.4
4,964,682	-		EFB2_04714	0.35	+0.6
4,964,682	-		EFB2_04714	0.35	-2.2
4,964,682	-		EFB2_04714	0.35	-0.7
4,964,732	+		EFB2_04714	0.38	-0.7
4,964,732	+		EFB2_04714	0.38	-0.4
4,964,732	+		EFB2_04714	0.38	+0.1
4,964,733	-		EFB2_04714	0.39	-0.6
4,964,733	-		EFB2_04714	0.39	+0.7
4,964,733	-		EFB2_04714	0.39	-0.8
4,964,757	+		EFB2_04714	0.40	+1.0
4,964,758	-		EFB2_04714	0.41	-0.1
4,964,822	+		EFB2_04714	0.46	+0.5
4,964,822	+		EFB2_04714	0.46	-1.0
4,964,822	+		EFB2_04714	0.46	+3.0
4,964,822	+		EFB2_04714	0.46	-0.1
4,964,822	+		EFB2_04714	0.46	-0.7
4,964,822	+		EFB2_04714	0.46	+0.3
4,964,822	+		EFB2_04714	0.46	+0.0
4,964,823	-		EFB2_04714	0.46	-0.3
4,964,823	-		EFB2_04714	0.46	+1.0
4,964,823	-		EFB2_04714	0.46	-0.4
4,964,823	-		EFB2_04714	0.46	+1.8
4,964,823	-		EFB2_04714	0.46	-3.4
4,964,823	-		EFB2_04714	0.46	-0.7
4,964,826	-		EFB2_04714	0.46	-0.0
4,964,826	-		EFB2_04714	0.46	+0.8
4,964,893	+		EFB2_04714	0.51	+2.0
4,964,894	-		EFB2_04714	0.51	-0.9
4,964,894	-		EFB2_04714	0.51	+1.0
4,964,909	+		EFB2_04714	0.53	+0.9
4,964,955	+		EFB2_04714	0.56	-0.2
4,964,955	+		EFB2_04714	0.56	+0.6
4,964,955	+		EFB2_04714	0.56	-3.8
4,964,955	+		EFB2_04714	0.56	+0.5
4,964,956	-		EFB2_04714	0.56	+1.7
4,964,956	-		EFB2_04714	0.56	+1.0
4,964,956	-		EFB2_04714	0.56	-0.3
4,964,956	-		EFB2_04714	0.56	+0.8
4,964,956	-		EFB2_04714	0.56	+0.7
4,964,956	-		EFB2_04714	0.56	+0.7
4,964,956	-		EFB2_04714	0.56	+1.3
4,964,956	-		EFB2_04714	0.56	-1.2
4,964,956	-		EFB2_04714	0.56	+0.8
4,964,979	+		EFB2_04714	0.58	-0.3
4,964,979	+		EFB2_04714	0.58	+1.2
4,964,980	-		EFB2_04714	0.58	+0.2
4,964,980	-		EFB2_04714	0.58	+0.9
4,964,980	-		EFB2_04714	0.58	+0.8
4,964,988	+		EFB2_04714	0.59	-1.2
4,964,988	+		EFB2_04714	0.59	+2.1
4,964,988	+		EFB2_04714	0.59	+1.4
4,964,988	+		EFB2_04714	0.59	-1.4
4,964,989	-		EFB2_04714	0.59	+1.1
4,964,989	-		EFB2_04714	0.59	-3.3
4,965,081	+		EFB2_04714	0.66	-0.7
4,965,081	+		EFB2_04714	0.66	+1.3
4,965,081	+		EFB2_04714	0.66	+0.1
4,965,081	+		EFB2_04714	0.66	+0.6
4,965,081	+		EFB2_04714	0.66	+1.0
4,965,081	+		EFB2_04714	0.66	+0.7
4,965,081	+		EFB2_04714	0.66	+0.0
4,965,081	+		EFB2_04714	0.66	+0.1
4,965,081	+		EFB2_04714	0.66	-0.2
4,965,081	+		EFB2_04714	0.66	-0.1
4,965,081	+		EFB2_04714	0.66	+0.2
4,965,081	+		EFB2_04714	0.66	+1.0
4,965,081	+		EFB2_04714	0.66	-1.0
4,965,081	+		EFB2_04714	0.66	+0.5
4,965,081	+		EFB2_04714	0.66	+1.0
4,965,081	+		EFB2_04714	0.66	+0.4
4,965,081	+		EFB2_04714	0.66	-1.0
4,965,081	+		EFB2_04714	0.66	-1.2
4,965,081	+		EFB2_04714	0.66	+0.6
4,965,081	+		EFB2_04714	0.66	+0.4
4,965,081	+		EFB2_04714	0.66	+0.8
4,965,081	+		EFB2_04714	0.66	+0.9
4,965,081	+		EFB2_04714	0.66	-0.9
4,965,081	+		EFB2_04714	0.66	-1.7
4,965,081	+		EFB2_04714	0.66	+0.8
4,965,081	+		EFB2_04714	0.66	+0.0
4,965,081	+		EFB2_04714	0.66	-2.8
4,965,081	+		EFB2_04714	0.66	+0.9
4,965,081	+		EFB2_04714	0.66	-0.1
4,965,081	+		EFB2_04714	0.66	+0.2
4,965,081	+		EFB2_04714	0.66	-2.7
4,965,081	+		EFB2_04714	0.66	-0.2
4,965,081	+		EFB2_04714	0.66	+0.6
4,965,081	+		EFB2_04714	0.66	+0.9
4,965,082	-		EFB2_04714	0.66	-1.1
4,965,082	-		EFB2_04714	0.66	-0.0
4,965,082	-		EFB2_04714	0.66	-2.2
4,965,082	-		EFB2_04714	0.66	-0.7
4,965,082	-		EFB2_04714	0.66	-0.3
4,965,082	-		EFB2_04714	0.66	-1.4
4,965,082	-		EFB2_04714	0.66	-1.2
4,965,082	-		EFB2_04714	0.66	-1.9
4,965,082	-		EFB2_04714	0.66	+0.5
4,965,082	-		EFB2_04714	0.66	-0.9
4,965,082	-		EFB2_04714	0.66	+0.4
4,965,082	-		EFB2_04714	0.66	+1.7
4,965,082	-		EFB2_04714	0.66	+0.3
4,965,082	-		EFB2_04714	0.66	+0.7
4,965,082	-		EFB2_04714	0.66	-0.5
4,965,082	-		EFB2_04714	0.66	+0.5
4,965,082	-		EFB2_04714	0.66	-1.5
4,965,082	-		EFB2_04714	0.66	+0.1
4,965,082	-		EFB2_04714	0.66	-0.4
4,965,082	-		EFB2_04714	0.66	+1.0
4,965,082	-		EFB2_04714	0.66	-0.5
4,965,082	-		EFB2_04714	0.66	+0.6
4,965,082	-		EFB2_04714	0.66	-1.7
4,965,082	-		EFB2_04714	0.66	-0.1
4,965,082	-		EFB2_04714	0.66	-3.5
4,965,082	-		EFB2_04714	0.66	-0.1
4,965,139	+		EFB2_04714	0.71	-0.0
4,965,139	+		EFB2_04714	0.71	+1.2
4,965,139	+		EFB2_04714	0.71	+1.3
4,965,139	+		EFB2_04714	0.71	-1.5
4,965,139	+		EFB2_04714	0.71	+0.4
4,965,139	+		EFB2_04714	0.71	+0.6
4,965,140	-		EFB2_04714	0.71	-1.4
4,965,140	-		EFB2_04714	0.71	+0.8
4,965,140	-		EFB2_04714	0.71	+1.2
4,965,140	-		EFB2_04714	0.71	+0.6
4,965,140	-		EFB2_04714	0.71	+0.7
4,965,140	-		EFB2_04714	0.71	+0.7
4,965,140	-		EFB2_04714	0.71	+0.2
4,965,140	-		EFB2_04714	0.71	+0.5
4,965,140	-		EFB2_04714	0.71	+0.2
4,965,140	-		EFB2_04714	0.71	-0.1
4,965,140	-		EFB2_04714	0.71	+2.4
4,965,140	-		EFB2_04714	0.71	+0.3
4,965,140	-		EFB2_04714	0.71	-0.6
4,965,140	-		EFB2_04714	0.71	+0.3
4,965,140	-		EFB2_04714	0.71	+0.9
4,965,212	+		EFB2_04714	0.77	+0.4
4,965,239	+		EFB2_04714	0.79	-0.1
4,965,240	-		EFB2_04714	0.79	-0.9
4,965,240	-		EFB2_04714	0.79	+1.1
4,965,269	+		EFB2_04714	0.81	-0.4
4,965,270	-		EFB2_04714	0.81	-1.0
4,965,270	-		EFB2_04714	0.81	-0.9
4,965,278	+		EFB2_04714	0.82	+1.8
4,965,279	-		EFB2_04714	0.82	+0.4
4,965,295	+		EFB2_04714	0.83	+0.0
4,965,295	+		EFB2_04714	0.83	+0.7
4,965,295	+		EFB2_04714	0.83	+0.5
4,965,295	+		EFB2_04714	0.83	+1.8
4,965,295	+		EFB2_04714	0.83	+1.5
4,965,295	+		EFB2_04714	0.83	+0.5
4,965,295	+		EFB2_04714	0.83	+0.5
4,965,295	+		EFB2_04714	0.83	+1.0
4,965,295	+		EFB2_04714	0.83	-1.0
4,965,295	+		EFB2_04714	0.83	+0.4
4,965,295	+		EFB2_04714	0.83	-1.6
4,965,295	+		EFB2_04714	0.83	-1.2
4,965,295	+		EFB2_04714	0.83	+0.0
4,965,295	+		EFB2_04714	0.83	-1.2
4,965,295	+		EFB2_04714	0.83	+1.4
4,965,295	+		EFB2_04714	0.83	+1.1
4,965,295	+		EFB2_04714	0.83	+1.0
4,965,295	+		EFB2_04714	0.83	+0.5
4,965,295	+		EFB2_04714	0.83	+1.4
4,965,296	-		EFB2_04714	0.83	+0.7
4,965,296	-		EFB2_04714	0.83	+1.3
4,965,296	-		EFB2_04714	0.83	+0.7
4,965,296	-		EFB2_04714	0.83	+1.2
4,965,296	-		EFB2_04714	0.83	-0.2
4,965,296	-		EFB2_04714	0.83	-0.5
4,965,296	-		EFB2_04714	0.83	-1.5
4,965,296	-		EFB2_04714	0.83	+0.1
4,965,296	-		EFB2_04714	0.83	+1.2
4,965,296	-		EFB2_04714	0.83	+0.4
4,965,296	-		EFB2_04714	0.83	-1.6
4,965,314	+		EFB2_04714	0.85	+0.5
4,965,314	+		EFB2_04714	0.85	+0.6
4,965,314	+		EFB2_04714	0.85	+0.4
4,965,314	+		EFB2_04714	0.85	-0.6
4,965,315	-		EFB2_04714	0.85	+1.3
4,965,351	+		EFB2_04714	0.88	+1.7
4,965,351	+		EFB2_04714	0.88	+0.2
4,965,351	+		EFB2_04714	0.88	+1.0
4,965,352	-		EFB2_04714	0.88	-1.3
4,965,352	-		EFB2_04714	0.88	+0.9
4,965,352	-		EFB2_04714	0.88	+0.3
4,965,352	-		EFB2_04714	0.88	+0.8
4,965,352	-		EFB2_04714	0.88	+1.3
4,965,352	-		EFB2_04714	0.88	-0.8
4,965,352	-		EFB2_04714	0.88	+0.3
4,965,417	+				+0.5
4,965,417	+				+1.5
4,965,417	+				-0.5
4,965,417	+				-1.6
4,965,417	+				-0.2
4,965,417	+				+0.6
4,965,417	+				+0.6
4,965,417	+				-0.0
4,965,417	+				-0.6
4,965,417	+				+1.1
4,965,417	+				+0.1
4,965,417	+				-1.0
4,965,417	+				+0.5
4,965,417	+				+0.7
4,965,418	-				+0.1
4,965,418	-				-1.2
4,965,418	-				-0.7
4,965,418	-				-0.3
4,965,418	-				+0.9
4,965,418	-				+0.4
4,965,418	-				+1.0
4,965,418	-				-0.7
4,965,418	-				+0.2
4,965,418	-				+1.0
4,965,474	+				+0.1
4,965,474	+				+1.8
4,965,474	+				+0.7
4,965,543	+				-1.3
4,965,543	+				-0.7
4,965,543	+				-1.3
4,965,543	+				-1.0
4,965,544	-				+0.9
4,965,544	-				-0.3
4,965,552	+				+0.1
4,965,552	+				-0.2
4,965,552	+				+0.7
4,965,552	+				+0.7
4,965,552	+				-0.1
4,965,552	+				+2.7
4,965,552	+				+2.0
4,965,552	+				-0.0
4,965,552	+				+0.0
4,965,553	-				+0.3
4,965,553	-				+0.6
4,965,553	-				-1.3
4,965,553	-				-1.9
4,965,553	-				+1.0
4,965,553	-				-0.4
4,965,553	-				+0.2
4,965,553	-				+0.6
4,965,582	+				-0.8
4,965,582	+				-0.5
4,965,582	+				-0.1
4,965,583	-				+1.1
4,965,583	-				+0.8
4,965,583	-				-0.6
4,965,610	-				-1.0
4,965,610	-				-0.7
4,965,610	-				+1.4
4,965,610	-				+0.4
4,965,731	+		EFB2_04715	0.16	-0.1
4,965,731	+		EFB2_04715	0.16	-0.4
4,965,731	+		EFB2_04715	0.16	-0.1
4,965,731	+		EFB2_04715	0.16	+0.3
4,965,731	+		EFB2_04715	0.16	+0.6
4,965,732	-		EFB2_04715	0.16	+0.9
4,965,732	-		EFB2_04715	0.16	+1.3
4,965,732	-		EFB2_04715	0.16	+1.4
4,965,732	-		EFB2_04715	0.16	-0.3
4,965,732	-		EFB2_04715	0.16	-0.7
4,965,732	-		EFB2_04715	0.16	-2.3
4,965,761	+		EFB2_04715	0.20	-0.2
4,965,761	+		EFB2_04715	0.20	+1.5
4,965,761	+		EFB2_04715	0.20	+1.0
4,965,762	-		EFB2_04715	0.20	-1.5
4,965,762	-		EFB2_04715	0.20	-0.4
4,965,762	-		EFB2_04715	0.20	+0.9
4,965,763	+		EFB2_04715	0.20	-2.6
4,965,763	+		EFB2_04715	0.20	+0.4
4,965,763	+		EFB2_04715	0.20	-0.8
4,965,764	-		EFB2_04715	0.20	+0.8
4,965,764	-		EFB2_04715	0.20	+0.9
4,965,789	+		EFB2_04715	0.23	+0.7
4,965,790	-		EFB2_04715	0.23	+0.5
4,965,799	+		EFB2_04715	0.24	+2.6
4,965,799	+		EFB2_04715	0.24	+0.3
4,965,800	-		EFB2_04715	0.24	-2.8
4,965,800	-		EFB2_04715	0.24	-2.2
4,965,800	-		EFB2_04715	0.24	-1.3
4,965,800	-		EFB2_04715	0.24	+0.3
4,965,800	-		EFB2_04715	0.24	-0.6
4,965,800	-		EFB2_04715	0.24	+0.3
4,965,800	-		EFB2_04715	0.24	-0.9
4,965,800	-		EFB2_04715	0.24	-0.5
4,965,800	-		EFB2_04715	0.24	-0.6
4,965,809	-		EFB2_04715	0.25	-0.3
4,965,809	-		EFB2_04715	0.25	-0.2
4,965,809	-		EFB2_04715	0.25	+1.7
4,965,862	+		EFB2_04715	0.32	-0.1
4,965,862	+		EFB2_04715	0.32	-2.9
4,965,862	+		EFB2_04715	0.32	+1.9
4,965,863	-		EFB2_04715	0.32	+0.7
4,965,863	-		EFB2_04715	0.32	-0.8
4,965,867	+		EFB2_04715	0.32	-1.9
4,965,867	+		EFB2_04715	0.32	-0.2
4,965,867	+		EFB2_04715	0.32	-0.7
4,965,867	+		EFB2_04715	0.32	-1.5
4,965,867	+		EFB2_04715	0.32	-0.9
4,965,867	+		EFB2_04715	0.32	-2.0
4,965,867	+		EFB2_04715	0.32	-2.0
4,965,867	+		EFB2_04715	0.32	-0.7
4,965,867	+		EFB2_04715	0.32	-0.5
4,965,867	+		EFB2_04715	0.32	+1.3
4,965,867	+		EFB2_04715	0.32	+1.3
4,965,867	+		EFB2_04715	0.32	-0.5
4,965,867	+		EFB2_04715	0.32	+0.6
4,965,868	-		EFB2_04715	0.33	+0.3
4,965,868	-		EFB2_04715	0.33	+1.4
4,965,868	-		EFB2_04715	0.33	+0.8
4,965,868	-		EFB2_04715	0.33	-0.3
4,965,868	-		EFB2_04715	0.33	+1.4
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