Strain Fitness in Escherichia fergusonii Becca around EFB2_03376

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,524,114	-				-2.2
3,524,115	+				-1.0
3,524,119	-				+1.9
3,524,121	+				-1.0
3,524,121	+				+0.1
3,524,121	+				-1.9
3,524,121	+				-0.1
3,524,122	-				+0.4
3,524,122	-				+0.8
3,524,122	-				+0.4
3,524,125	+				-0.0
3,524,126	-				+1.2
3,524,126	-				+1.8
3,524,126	-				-0.1
3,524,126	-				+1.1
3,524,126	-				+3.3
3,524,130	-				-1.4
3,524,130	-				-0.2
3,524,130	-				-0.8
3,524,135	-				-1.7
3,524,138	+				-1.4
3,524,138	+				-0.3
3,524,139	-				-2.3
3,524,139	-				+0.6
3,524,154	+				-1.6
3,524,158	+				+1.3
3,524,158	+				+0.9
3,524,163	+				+1.9
3,524,163	+				-0.1
3,524,164	-				-1.2
3,524,164	-				-0.9
3,524,178	+				+2.2
3,524,179	-				-0.1
3,524,179	-				+1.6
3,524,195	+				-0.1
3,524,206	+				+0.5
3,524,206	+				+0.1
3,524,207	-				-0.4
3,524,207	-				-0.7
3,524,211	+				-2.9
3,524,211	+				+1.5
3,524,212	-				+0.1
3,524,258	-				-2.7
3,524,266	+				-1.0
3,524,267	-				-0.1
3,524,267	-				+0.3
3,524,267	-				+1.1
3,524,267	-				+1.1
3,524,270	+				-1.6
3,524,270	+				-0.1
3,524,270	+				+0.4
3,524,270	+				+3.3
3,524,271	-				-2.3
3,524,271	-				+1.0
3,524,272	+				-1.0
3,524,307	+				+1.6
3,524,307	+				-0.8
3,524,307	+				+1.9
3,524,307	+				-1.8
3,524,307	+				-2.2
3,524,307	+				-2.0
3,524,308	-				+1.5
3,524,308	-				+0.8
3,524,308	-				-0.3
3,524,308	-				+0.1
3,524,308	-				-1.0
3,524,308	-				-1.7
3,524,308	-				-1.2
3,524,309	+				+0.9
3,524,309	+				-0.3
3,524,309	+				+1.5
3,524,309	+				-1.1
3,524,309	+				+0.1
3,524,309	+				+1.3
3,524,309	+				-3.4
3,524,309	+				+0.6
3,524,309	+				+0.8
3,524,309	+				-0.2
3,524,309	+				-0.2
3,524,309	+				-0.6
3,524,309	+				-1.9
3,524,309	+				+1.8
3,524,309	+				-1.0
3,524,309	+				+2.2
3,524,309	+				+0.6
3,524,309	+				+0.5
3,524,309	+				+1.2
3,524,309	+				+0.1
3,524,310	-				+1.4
3,524,310	-				-3.0
3,524,310	-				-1.3
3,524,310	-				-0.7
3,524,310	-				+1.2
3,524,310	-				+0.1
3,524,310	-				+0.9
3,524,310	-				+1.0
3,524,310	-				-1.7
3,524,310	-				-1.6
3,524,310	-				+0.9
3,524,310	-				-1.8
3,524,310	-				+0.4
3,524,314	+				+1.3
3,524,315	-				-1.9
3,524,315	-				-1.9
3,524,315	-				+0.3
3,524,315	-				-2.4
3,524,315	-				+1.8
3,524,317	+				-2.7
3,524,320	+				+2.6
3,524,320	+				-0.9
3,524,320	+				+0.0
3,524,334	+				-2.5
3,524,345	+				+1.5
3,524,377	+				+0.8
3,524,379	+				+0.5
3,524,379	+				+0.9
3,524,380	-				+0.0
3,524,446	+				-0.2
3,524,463	+				-0.7
3,524,470	-				+0.7
3,524,470	-				-1.0
3,524,471	+				+0.4
3,524,472	-				-1.5
3,524,472	-				+1.7
3,524,507	-				-2.3
3,524,539	+				-1.4
3,524,539	+				+1.2
3,524,543	+				-1.7
3,524,579	+				+0.8
3,524,579	+				+0.6
3,524,584	-				+1.1
3,524,632	+				+1.5
3,524,657	+				-2.1
3,524,658	-				+0.4
3,524,716	+				-2.2
3,524,749	+		EFB2_03375	0.14	-0.7
3,524,794	+		EFB2_03375	0.31	+0.8
3,524,813	-		EFB2_03375	0.38	+0.9
3,524,833	+		EFB2_03375	0.45	+0.9
3,524,857	-		EFB2_03375	0.54	-0.7
3,524,857	-		EFB2_03375	0.54	-1.9
3,524,857	-		EFB2_03375	0.54	-0.2
3,524,937	+		EFB2_03375	0.83	+0.4
3,524,967	+				-1.9
3,525,022	+				-1.0
3,525,023	-				+1.0
3,525,024	+				+0.4
3,525,025	-				-1.6
3,525,027	+				+0.7
3,525,027	+				+0.4
3,525,028	-				-0.4
3,525,034	+				-0.3
3,525,094	-				+0.2
3,525,107	+				+1.4
3,525,107	+				-2.3
3,525,107	+				-2.9
3,525,108	-				-1.2
3,525,108	-				+1.1
3,525,108	-				+0.5
3,525,108	-				+0.5
3,525,108	-				-1.7
3,525,126	+				-1.5
3,525,142	+				+2.6
3,525,145	+				-0.9
3,525,145	+				+0.7
3,525,146	-				+1.7
3,525,146	-				+1.0
3,525,159	+				+0.1
3,525,171	-				-0.4
3,525,223	+		EFB2_03376	0.14	+0.0
3,525,225	+		EFB2_03376	0.14	-0.0
3,525,248	-		EFB2_03376	0.16	+1.3
3,525,250	-		EFB2_03376	0.16	+1.1
3,525,250	-		EFB2_03376	0.16	-0.5
3,525,269	-		EFB2_03376	0.18	+0.4
3,525,339	-		EFB2_03376	0.26	-1.5
3,525,339	-		EFB2_03376	0.26	-2.4
3,525,353	+		EFB2_03376	0.27	-0.5
3,525,353	+		EFB2_03376	0.27	+0.2
3,525,353	+		EFB2_03376	0.27	-2.8
3,525,353	+		EFB2_03376	0.27	-1.1
3,525,354	-		EFB2_03376	0.27	-1.4
3,525,382	+		EFB2_03376	0.30	-0.3
3,525,394	+		EFB2_03376	0.31	-1.7
3,525,395	-		EFB2_03376	0.32	+0.7
3,525,424	+		EFB2_03376	0.35	+0.7
3,525,466	+		EFB2_03376	0.39	-3.2
3,525,466	+		EFB2_03376	0.39	+0.8
3,525,466	+		EFB2_03376	0.39	-3.1
3,525,466	+		EFB2_03376	0.39	+2.7
3,525,466	+		EFB2_03376	0.39	+0.5
3,525,466	+		EFB2_03376	0.39	+1.5
3,525,466	+		EFB2_03376	0.39	-0.0
3,525,467	-		EFB2_03376	0.39	-0.7
3,525,467	-		EFB2_03376	0.39	+0.2
3,525,467	-		EFB2_03376	0.39	+1.3
3,525,467	-		EFB2_03376	0.39	-1.0
3,525,467	-		EFB2_03376	0.39	+0.4
3,525,468	+		EFB2_03376	0.39	+0.2
3,525,468	+		EFB2_03376	0.39	+1.1
3,525,468	+		EFB2_03376	0.39	-1.2
3,525,468	+		EFB2_03376	0.39	+0.2
3,525,468	+		EFB2_03376	0.39	-0.5
3,525,468	+		EFB2_03376	0.39	+1.5
3,525,468	+		EFB2_03376	0.39	+0.3
3,525,468	+		EFB2_03376	0.39	+5.0
3,525,469	-		EFB2_03376	0.39	+1.6
3,525,469	-		EFB2_03376	0.39	-0.9
3,525,469	-		EFB2_03376	0.39	+0.7
3,525,469	-		EFB2_03376	0.39	-1.9
3,525,469	-		EFB2_03376	0.39	+2.7
3,525,469	-		EFB2_03376	0.39	-0.8
3,525,469	-		EFB2_03376	0.39	-1.1
3,525,469	-		EFB2_03376	0.39	+0.8
3,525,469	-		EFB2_03376	0.39	+1.2
3,525,469	-		EFB2_03376	0.39	+0.3
3,525,469	-		EFB2_03376	0.39	+1.2
3,525,469	-		EFB2_03376	0.39	-1.1
3,525,469	-		EFB2_03376	0.39	+0.1
3,525,472	+		EFB2_03376	0.40	+1.6
3,525,472	+		EFB2_03376	0.40	+0.8
3,525,472	+		EFB2_03376	0.40	-2.9
3,525,472	+		EFB2_03376	0.40	-1.3
3,525,472	+		EFB2_03376	0.40	-2.1
3,525,472	+		EFB2_03376	0.40	-0.7
3,525,472	+		EFB2_03376	0.40	-2.3
3,525,472	+		EFB2_03376	0.40	+0.7
3,525,472	+		EFB2_03376	0.40	+0.1
3,525,472	+		EFB2_03376	0.40	+1.5
3,525,472	+		EFB2_03376	0.40	-0.5
3,525,472	+		EFB2_03376	0.40	-1.0
3,525,472	+		EFB2_03376	0.40	-1.1
3,525,473	-		EFB2_03376	0.40	+2.5
3,525,473	-		EFB2_03376	0.40	-1.4
3,525,473	-		EFB2_03376	0.40	+1.9
3,525,473	-		EFB2_03376	0.40	+1.5
3,525,473	-		EFB2_03376	0.40	-1.1
3,525,473	-		EFB2_03376	0.40	-0.4
3,525,473	-		EFB2_03376	0.40	-0.9
3,525,491	+		EFB2_03376	0.42	+0.2
3,525,491	+		EFB2_03376	0.42	+0.3
3,525,491	+		EFB2_03376	0.42	+0.5
3,525,492	-		EFB2_03376	0.42	-1.7
3,525,492	-		EFB2_03376	0.42	+0.8
3,525,492	-		EFB2_03376	0.42	-0.6
3,525,492	-		EFB2_03376	0.42	+0.1
3,525,492	-		EFB2_03376	0.42	+0.4
3,525,495	+		EFB2_03376	0.42	-2.4
3,525,495	+		EFB2_03376	0.42	+1.7
3,525,495	+		EFB2_03376	0.42	+3.0
3,525,495	+		EFB2_03376	0.42	+1.5
3,525,495	+		EFB2_03376	0.42	+1.5
3,525,495	+		EFB2_03376	0.42	+0.5
3,525,495	+		EFB2_03376	0.42	+0.6
3,525,495	+		EFB2_03376	0.42	-0.6
3,525,495	+		EFB2_03376	0.42	-0.5
3,525,496	-		EFB2_03376	0.42	+0.3
3,525,496	-		EFB2_03376	0.42	+1.7
3,525,496	-		EFB2_03376	0.42	-1.9
3,525,496	-		EFB2_03376	0.42	-0.3
3,525,528	+		EFB2_03376	0.45	+2.1
3,525,528	+		EFB2_03376	0.45	+3.3
3,525,528	+		EFB2_03376	0.45	-0.3
3,525,529	-		EFB2_03376	0.46	+0.5
3,525,529	-		EFB2_03376	0.46	+1.5
3,525,529	-		EFB2_03376	0.46	+1.2
3,525,529	-		EFB2_03376	0.46	+0.4
3,525,529	-		EFB2_03376	0.46	-1.9
3,525,529	-		EFB2_03376	0.46	+1.2
3,525,529	-		EFB2_03376	0.46	-0.4
3,525,529	-		EFB2_03376	0.46	+0.8
3,525,529	-		EFB2_03376	0.46	-2.2
3,525,532	+		EFB2_03376	0.46	+1.3
3,525,532	+		EFB2_03376	0.46	-2.3
3,525,532	+		EFB2_03376	0.46	-3.2
3,525,532	+		EFB2_03376	0.46	+3.0
3,525,533	-		EFB2_03376	0.46	+0.2
3,525,533	-		EFB2_03376	0.46	+0.1
3,525,550	+		EFB2_03376	0.48	-1.1
3,525,551	-		EFB2_03376	0.48	+0.0
3,525,551	-		EFB2_03376	0.48	+1.6
3,525,551	-		EFB2_03376	0.48	-0.1
3,525,551	-		EFB2_03376	0.48	+1.1
3,525,551	-		EFB2_03376	0.48	+0.4
3,525,551	-		EFB2_03376	0.48	+0.4
3,525,556	+		EFB2_03376	0.48	+2.7
3,525,556	+		EFB2_03376	0.48	+2.1
3,525,556	+		EFB2_03376	0.48	-3.7
3,525,556	+		EFB2_03376	0.48	+0.4
3,525,556	+		EFB2_03376	0.48	-0.2
3,525,556	+		EFB2_03376	0.48	+1.4
3,525,557	-		EFB2_03376	0.48	+1.8
3,525,557	-		EFB2_03376	0.48	+1.3
3,525,557	-		EFB2_03376	0.48	-0.1
3,525,558	+		EFB2_03376	0.49	-1.8
3,525,558	+		EFB2_03376	0.49	-0.3
3,525,558	+		EFB2_03376	0.49	-0.1
3,525,558	+		EFB2_03376	0.49	+2.7
3,525,558	+		EFB2_03376	0.49	-0.0
3,525,559	-		EFB2_03376	0.49	+0.1
3,525,559	-		EFB2_03376	0.49	+0.7
3,525,559	-		EFB2_03376	0.49	-1.1
3,525,559	-		EFB2_03376	0.49	-1.2
3,525,559	-		EFB2_03376	0.49	+1.0
3,525,573	+		EFB2_03376	0.50	+2.7
3,525,573	+		EFB2_03376	0.50	+0.2
3,525,573	+		EFB2_03376	0.50	+1.2
3,525,573	+		EFB2_03376	0.50	+0.3
3,525,573	+		EFB2_03376	0.50	-2.4
3,525,573	+		EFB2_03376	0.50	-2.3
3,525,573	+		EFB2_03376	0.50	-1.4
3,525,573	+		EFB2_03376	0.50	-1.3
3,525,573	+		EFB2_03376	0.50	-2.9
3,525,573	+		EFB2_03376	0.50	-1.4
3,525,573	+		EFB2_03376	0.50	-2.1
3,525,574	-		EFB2_03376	0.50	+0.5
3,525,574	-		EFB2_03376	0.50	+1.3
3,525,574	-		EFB2_03376	0.50	+0.7
3,525,574	-		EFB2_03376	0.50	-1.0
3,525,574	-		EFB2_03376	0.50	+1.6
3,525,574	-		EFB2_03376	0.50	-2.3
3,525,574	-		EFB2_03376	0.50	-1.9
3,525,574	-		EFB2_03376	0.50	+1.1
3,525,579	+		EFB2_03376	0.51	-2.6
3,525,579	+		EFB2_03376	0.51	-0.7
3,525,579	+		EFB2_03376	0.51	-0.7
3,525,579	+		EFB2_03376	0.51	+0.5
3,525,579	+		EFB2_03376	0.51	-1.2
3,525,580	-		EFB2_03376	0.51	-1.1
3,525,607	+		EFB2_03376	0.54	+1.1
3,525,627	+		EFB2_03376	0.56	+0.3
3,525,627	+		EFB2_03376	0.56	-1.3
3,525,627	+		EFB2_03376	0.56	+2.5
3,525,627	+		EFB2_03376	0.56	+2.5
3,525,627	+		EFB2_03376	0.56	-0.2
3,525,627	+		EFB2_03376	0.56	+1.1
3,525,627	+		EFB2_03376	0.56	+0.1
3,525,627	+		EFB2_03376	0.56	-0.9
3,525,627	+		EFB2_03376	0.56	-1.0
3,525,627	+		EFB2_03376	0.56	-1.4
3,525,627	+		EFB2_03376	0.56	-0.1
3,525,627	+		EFB2_03376	0.56	-3.1
3,525,628	-		EFB2_03376	0.56	-2.1
3,525,628	-		EFB2_03376	0.56	-2.7
3,525,628	-		EFB2_03376	0.56	+0.5
3,525,628	-		EFB2_03376	0.56	-0.4
3,525,628	-		EFB2_03376	0.56	-0.3
3,525,628	-		EFB2_03376	0.56	+1.5
3,525,628	-		EFB2_03376	0.56	-2.3
3,525,628	-		EFB2_03376	0.56	-2.6
3,525,628	-		EFB2_03376	0.56	-0.5
3,525,628	-		EFB2_03376	0.56	+0.2
3,525,628	-		EFB2_03376	0.56	+1.4
3,525,628	-		EFB2_03376	0.56	+0.0
3,525,628	-		EFB2_03376	0.56	-2.3
3,525,628	-		EFB2_03376	0.56	-1.6
3,525,628	-		EFB2_03376	0.56	-2.7
3,525,628	-		EFB2_03376	0.56	+0.5
3,525,628	-		EFB2_03376	0.56	-0.9
3,525,628	-		EFB2_03376	0.56	-2.0
3,525,628	-		EFB2_03376	0.56	+0.1
3,525,628	-		EFB2_03376	0.56	+1.5
3,525,628	-		EFB2_03376	0.56	-1.2
3,525,628	-		EFB2_03376	0.56	-2.0
3,525,631	+		EFB2_03376	0.56	+0.4
3,525,631	+		EFB2_03376	0.56	+0.5
3,525,632	-		EFB2_03376	0.56	-0.8
3,525,632	-		EFB2_03376	0.56	-0.1
3,525,637	+		EFB2_03376	0.57	-2.8
3,525,655	+		EFB2_03376	0.59	+0.7
3,525,655	+		EFB2_03376	0.59	+0.3
3,525,656	-		EFB2_03376	0.59	+1.7
3,525,673	+		EFB2_03376	0.61	-2.7
3,525,673	+		EFB2_03376	0.61	-2.6
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