Strain Fitness in Escherichia fergusonii Becca around EFB2_01748

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,851,246	+		EFB2_01747	0.61	-0.8
1,851,246	+		EFB2_01747	0.61	-0.1
1,851,247	-		EFB2_01747	0.61	-0.0
1,851,247	-		EFB2_01747	0.61	-0.1
1,851,247	-		EFB2_01747	0.61	+1.5
1,851,247	-		EFB2_01747	0.61	+1.0
1,851,247	-		EFB2_01747	0.61	+1.1
1,851,250	+		EFB2_01747	0.61	-1.8
1,851,250	+		EFB2_01747	0.61	-2.0
1,851,251	-		EFB2_01747	0.61	-0.1
1,851,251	-		EFB2_01747	0.61	-0.6
1,851,251	-		EFB2_01747	0.61	-1.0
1,851,266	+		EFB2_01747	0.62	-0.6
1,851,266	+		EFB2_01747	0.62	+1.2
1,851,267	-		EFB2_01747	0.62	+1.3
1,851,296	+		EFB2_01747	0.63	+0.8
1,851,309	-		EFB2_01747	0.63	-0.1
1,851,309	-		EFB2_01747	0.63	-3.2
1,851,309	-		EFB2_01747	0.63	+2.9
1,851,335	+		EFB2_01747	0.64	+1.2
1,851,335	+		EFB2_01747	0.64	-0.0
1,851,335	+		EFB2_01747	0.64	+1.3
1,851,335	+		EFB2_01747	0.64	-1.6
1,851,335	+		EFB2_01747	0.64	+0.0
1,851,335	+		EFB2_01747	0.64	-0.7
1,851,335	+		EFB2_01747	0.64	-0.6
1,851,335	+		EFB2_01747	0.64	+0.6
1,851,335	+		EFB2_01747	0.64	+0.8
1,851,335	+		EFB2_01747	0.64	-2.2
1,851,335	+		EFB2_01747	0.64	-0.1
1,851,335	+		EFB2_01747	0.64	-0.0
1,851,335	+		EFB2_01747	0.64	+1.5
1,851,335	+		EFB2_01747	0.64	-0.1
1,851,335	+		EFB2_01747	0.64	+0.3
1,851,335	+		EFB2_01747	0.64	+0.1
1,851,336	-		EFB2_01747	0.64	-2.1
1,851,336	-		EFB2_01747	0.64	-0.4
1,851,336	-		EFB2_01747	0.64	-2.8
1,851,336	-		EFB2_01747	0.64	-0.5
1,851,336	-		EFB2_01747	0.64	+2.3
1,851,338	-		EFB2_01747	0.65	-1.7
1,851,359	+		EFB2_01747	0.65	-0.9
1,851,359	+		EFB2_01747	0.65	+1.7
1,851,360	-		EFB2_01747	0.65	+2.5
1,851,360	-		EFB2_01747	0.65	-1.1
1,851,360	-		EFB2_01747	0.65	+0.0
1,851,400	+		EFB2_01747	0.67	+0.1
1,851,453	+		EFB2_01747	0.69	-1.6
1,851,453	+		EFB2_01747	0.69	+0.0
1,851,453	+		EFB2_01747	0.69	-0.2
1,851,453	+		EFB2_01747	0.69	+1.0
1,851,453	+		EFB2_01747	0.69	-1.2
1,851,453	+		EFB2_01747	0.69	-1.5
1,851,453	+		EFB2_01747	0.69	-1.6
1,851,454	-		EFB2_01747	0.69	+2.0
1,851,455	+		EFB2_01747	0.69	+1.5
1,851,455	+		EFB2_01747	0.69	-1.3
1,851,455	+		EFB2_01747	0.69	-2.1
1,851,455	+		EFB2_01747	0.69	-0.1
1,851,455	+		EFB2_01747	0.69	-0.5
1,851,455	+		EFB2_01747	0.69	-1.9
1,851,455	+		EFB2_01747	0.69	+0.3
1,851,456	-		EFB2_01747	0.69	-0.5
1,851,456	-		EFB2_01747	0.69	-0.8
1,851,456	-		EFB2_01747	0.69	-1.0
1,851,456	-		EFB2_01747	0.69	-2.2
1,851,456	-		EFB2_01747	0.69	-0.1
1,851,456	-		EFB2_01747	0.69	-0.7
1,851,456	-		EFB2_01747	0.69	-1.0
1,851,456	-		EFB2_01747	0.69	-1.5
1,851,456	-		EFB2_01747	0.69	-1.6
1,851,456	-		EFB2_01747	0.69	+1.5
1,851,456	-		EFB2_01747	0.69	-2.8
1,851,456	-		EFB2_01747	0.69	-2.8
1,851,456	-		EFB2_01747	0.69	+0.8
1,851,456	-		EFB2_01747	0.69	+0.2
1,851,456	-		EFB2_01747	0.69	-0.1
1,851,456	-		EFB2_01747	0.69	+0.5
1,851,457	+		EFB2_01747	0.69	+0.6
1,851,457	+		EFB2_01747	0.69	-1.2
1,851,457	+		EFB2_01747	0.69	+1.2
1,851,457	+		EFB2_01747	0.69	-1.9
1,851,457	+		EFB2_01747	0.69	+1.3
1,851,457	+		EFB2_01747	0.69	-0.2
1,851,457	+		EFB2_01747	0.69	-2.1
1,851,457	+		EFB2_01747	0.69	+0.6
1,851,457	+		EFB2_01747	0.69	-1.9
1,851,457	+		EFB2_01747	0.69	-2.5
1,851,457	+		EFB2_01747	0.69	-1.9
1,851,457	+		EFB2_01747	0.69	-0.1
1,851,457	+		EFB2_01747	0.69	-0.5
1,851,457	+		EFB2_01747	0.69	-2.0
1,851,457	+		EFB2_01747	0.69	+1.9
1,851,458	-		EFB2_01747	0.69	-0.1
1,851,458	-		EFB2_01747	0.69	-1.6
1,851,458	-		EFB2_01747	0.69	-1.7
1,851,458	-		EFB2_01747	0.69	-0.4
1,851,458	-		EFB2_01747	0.69	+1.9
1,851,458	-		EFB2_01747	0.69	+1.6
1,851,458	-		EFB2_01747	0.69	+0.5
1,851,458	-		EFB2_01747	0.69	+0.6
1,851,458	-		EFB2_01747	0.69	-0.1
1,851,458	-		EFB2_01747	0.69	+1.7
1,851,458	-		EFB2_01747	0.69	+0.5
1,851,458	-		EFB2_01747	0.69	+1.8
1,851,464	-		EFB2_01747	0.70	+2.3
1,851,464	-		EFB2_01747	0.70	+1.7
1,851,502	+		EFB2_01747	0.71	+3.2
1,851,502	+		EFB2_01747	0.71	+1.9
1,851,503	-		EFB2_01747	0.71	-1.1
1,851,503	-		EFB2_01747	0.71	+1.6
1,851,544	+		EFB2_01747	0.73	+0.9
1,851,545	-		EFB2_01747	0.73	-0.7
1,851,545	-		EFB2_01747	0.73	-2.1
1,851,545	-		EFB2_01747	0.73	+1.9
1,851,545	-		EFB2_01747	0.73	+1.8
1,851,545	-		EFB2_01747	0.73	-0.5
1,851,548	+		EFB2_01747	0.73	+0.4
1,851,548	+		EFB2_01747	0.73	-1.5
1,851,548	+		EFB2_01747	0.73	-1.5
1,851,549	-		EFB2_01747	0.73	-1.6
1,851,549	-		EFB2_01747	0.73	+0.3
1,851,549	-		EFB2_01747	0.73	+0.2
1,851,566	+		EFB2_01747	0.74	+0.8
1,851,567	-		EFB2_01747	0.74	-1.6
1,851,567	-		EFB2_01747	0.74	+1.2
1,851,573	-		EFB2_01747	0.74	+2.2
1,851,607	-		EFB2_01747	0.75	-0.8
1,851,644	+		EFB2_01747	0.77	+0.1
1,851,644	+		EFB2_01747	0.77	+0.6
1,851,644	+		EFB2_01747	0.77	-0.6
1,851,644	+		EFB2_01747	0.77	+1.8
1,851,644	+		EFB2_01747	0.77	-2.5
1,851,644	+		EFB2_01747	0.77	+0.0
1,851,645	-		EFB2_01747	0.77	+2.8
1,851,645	-		EFB2_01747	0.77	+0.4
1,851,645	-		EFB2_01747	0.77	+0.5
1,851,645	-		EFB2_01747	0.77	-0.4
1,851,645	-		EFB2_01747	0.77	+1.0
1,851,646	+		EFB2_01747	0.77	-0.9
1,851,647	-		EFB2_01747	0.77	-0.4
1,851,647	-		EFB2_01747	0.77	-1.6
1,851,647	-		EFB2_01747	0.77	-0.5
1,851,647	-		EFB2_01747	0.77	+0.6
1,851,718	+		EFB2_01747	0.80	+0.7
1,851,772	+		EFB2_01747	0.82	-2.1
1,851,772	+		EFB2_01747	0.82	-0.0
1,851,782	+		EFB2_01747	0.82	+1.4
1,851,782	+		EFB2_01747	0.82	-0.1
1,851,782	+		EFB2_01747	0.82	+1.8
1,851,782	+		EFB2_01747	0.82	+0.7
1,851,782	+		EFB2_01747	0.82	-0.5
1,851,782	+		EFB2_01747	0.82	-2.4
1,851,782	+		EFB2_01747	0.82	-0.7
1,851,783	-		EFB2_01747	0.83	+2.6
1,851,783	-		EFB2_01747	0.83	-2.6
1,851,783	-		EFB2_01747	0.83	-0.2
1,851,783	-		EFB2_01747	0.83	+0.9
1,851,783	-		EFB2_01747	0.83	+0.1
1,851,783	-		EFB2_01747	0.83	-1.2
1,851,783	-		EFB2_01747	0.83	-0.7
1,851,831	+		EFB2_01747	0.84	-0.5
1,851,831	+		EFB2_01747	0.84	-0.7
1,851,831	+		EFB2_01747	0.84	+2.2
1,851,832	-		EFB2_01747	0.84	+0.6
1,851,833	+		EFB2_01747	0.85	-2.0
1,851,833	+		EFB2_01747	0.85	+1.0
1,851,834	-		EFB2_01747	0.85	+0.0
1,851,864	-		EFB2_01747	0.86	+2.1
1,851,906	+		EFB2_01747	0.87	-1.7
1,851,906	+		EFB2_01747	0.87	+0.2
1,851,907	-		EFB2_01747	0.88	-1.0
1,851,952	-		EFB2_01747	0.89	-2.2
1,851,959	-		EFB2_01747	0.90	-2.9
1,851,992	-				-0.1
1,851,992	-				-1.4
1,851,994	-				+0.9
1,852,061	-				+1.2
1,852,063	+				+1.1
1,852,063	+				+1.4
1,852,063	+				-2.1
1,852,093	-				-2.1
1,852,256	-				-2.1
1,852,256	-				-0.5
1,852,260	+				-0.5
1,852,287	-				-1.2
1,852,298	+				-2.3
1,852,299	-				+1.2
1,852,301	-				-1.7
1,852,309	-				+0.2
1,852,373	+		EFB2_01748	0.14	+1.5
1,852,373	+		EFB2_01748	0.14	-1.9
1,852,373	+		EFB2_01748	0.14	+0.5
1,852,417	+		EFB2_01748	0.18	+1.6
1,852,418	-		EFB2_01748	0.18	-1.4
1,852,579	+		EFB2_01748	0.34	+1.3
1,852,627	+		EFB2_01748	0.38	+0.8
1,852,701	+		EFB2_01748	0.45	-2.1
1,852,711	+		EFB2_01748	0.46	-1.4
1,852,711	+		EFB2_01748	0.46	-0.4
1,852,711	+		EFB2_01748	0.46	+0.0
1,852,712	-		EFB2_01748	0.46	+1.9
1,852,712	-		EFB2_01748	0.46	+1.0
1,852,731	+		EFB2_01748	0.48	+0.1
1,852,731	+		EFB2_01748	0.48	-1.5
1,852,732	-		EFB2_01748	0.48	+1.9
1,852,735	+		EFB2_01748	0.49	-2.4
1,852,735	+		EFB2_01748	0.49	-0.9
1,852,736	-		EFB2_01748	0.49	-2.5
1,852,739	+		EFB2_01748	0.49	+2.0
1,852,796	+		EFB2_01748	0.54	+2.1
1,852,852	+		EFB2_01748	0.60	+0.4
1,852,852	+		EFB2_01748	0.60	+0.9
1,852,979	+		EFB2_01748	0.72	-2.5
1,852,979	+		EFB2_01748	0.72	+0.4
1,853,072	-		EFB2_01748	0.81	+2.7
1,853,189	+				+3.0
1,853,190	-				-0.5
1,853,192	+				+0.5
1,853,199	-				+2.0
1,853,203	+				+0.4
1,853,264	+				-0.1
1,853,268	-				-0.8
1,853,294	+				-0.5
1,853,295	-				-1.6
1,853,304	-				+0.6
1,853,307	-				-0.3
1,853,376	+				+0.1
1,853,376	+				-1.9
1,853,377	-				-0.8
1,853,383	+		EFB2_01749	0.10	-2.4
1,853,393	-		EFB2_01749	0.13	-0.3
1,853,418	+		EFB2_01749	0.21	-1.2
1,853,418	+		EFB2_01749	0.21	+1.5
1,853,418	+		EFB2_01749	0.21	-0.4
1,853,418	+		EFB2_01749	0.21	+0.1
1,853,419	-		EFB2_01749	0.21	-2.2
1,853,431	+		EFB2_01749	0.24	-1.1
1,853,431	+		EFB2_01749	0.24	-0.2
1,853,433	+		EFB2_01749	0.25	+1.2
1,853,433	+		EFB2_01749	0.25	+2.2
1,853,433	+		EFB2_01749	0.25	+0.9
1,853,433	+		EFB2_01749	0.25	-0.4
1,853,433	+		EFB2_01749	0.25	+0.8
1,853,433	+		EFB2_01749	0.25	-1.7
1,853,433	+		EFB2_01749	0.25	-0.2
1,853,433	+		EFB2_01749	0.25	-1.2
1,853,433	+		EFB2_01749	0.25	+2.9
1,853,433	+		EFB2_01749	0.25	+1.9
1,853,433	+		EFB2_01749	0.25	-0.3
1,853,433	+		EFB2_01749	0.25	-1.5
1,853,433	+		EFB2_01749	0.25	-2.5
1,853,433	+		EFB2_01749	0.25	-1.5
1,853,433	+		EFB2_01749	0.25	+0.6
1,853,433	+		EFB2_01749	0.25	+0.9
1,853,433	+		EFB2_01749	0.25	+1.6
1,853,433	+		EFB2_01749	0.25	-0.5
1,853,433	+		EFB2_01749	0.25	+2.5
1,853,433	+		EFB2_01749	0.25	+0.3
1,853,433	+		EFB2_01749	0.25	-0.4
1,853,433	+		EFB2_01749	0.25	+1.2
1,853,434	-		EFB2_01749	0.25	-1.2
1,853,434	-		EFB2_01749	0.25	-0.1
1,853,434	-		EFB2_01749	0.25	-0.1
1,853,434	-		EFB2_01749	0.25	-0.4
1,853,434	-		EFB2_01749	0.25	-2.5
1,853,434	-		EFB2_01749	0.25	+1.9
1,853,434	-		EFB2_01749	0.25	-0.5
1,853,434	-		EFB2_01749	0.25	-1.8
1,853,434	-		EFB2_01749	0.25	-2.6
1,853,434	-		EFB2_01749	0.25	-1.0
1,853,434	-		EFB2_01749	0.25	+0.7
1,853,434	-		EFB2_01749	0.25	-0.3
1,853,434	-		EFB2_01749	0.25	+1.6
1,853,434	-		EFB2_01749	0.25	-1.5
1,853,434	-		EFB2_01749	0.25	+0.1
1,853,470	+		EFB2_01749	0.36	-0.2
1,853,471	-		EFB2_01749	0.36	+0.7
1,853,474	+		EFB2_01749	0.37	+0.3
1,853,474	+		EFB2_01749	0.37	+2.3
1,853,474	+		EFB2_01749	0.37	+0.0
1,853,474	+		EFB2_01749	0.37	+1.3
1,853,475	-		EFB2_01749	0.37	-1.4
1,853,475	-		EFB2_01749	0.37	-0.7
1,853,475	-		EFB2_01749	0.37	-0.6
1,853,475	-		EFB2_01749	0.37	+2.0
1,853,475	-		EFB2_01749	0.37	-1.4
1,853,475	-		EFB2_01749	0.37	+0.6
1,853,475	-		EFB2_01749	0.37	-4.0
1,853,475	-		EFB2_01749	0.37	-0.5
1,853,475	-		EFB2_01749	0.37	-2.5
1,853,475	-		EFB2_01749	0.37	+0.6
1,853,475	-		EFB2_01749	0.37	-0.6
1,853,489	-		EFB2_01749	0.42	-0.5
1,853,489	-		EFB2_01749	0.42	+2.2
1,853,489	-		EFB2_01749	0.42	-1.1
1,853,489	-		EFB2_01749	0.42	+0.9
1,853,489	-		EFB2_01749	0.42	-0.2
1,853,496	+		EFB2_01749	0.44	-2.7
1,853,496	+		EFB2_01749	0.44	+0.5
1,853,496	+		EFB2_01749	0.44	+1.6
1,853,496	+		EFB2_01749	0.44	-2.8
1,853,496	+		EFB2_01749	0.44	-2.5
1,853,496	+		EFB2_01749	0.44	+0.1
1,853,496	+		EFB2_01749	0.44	+0.8
1,853,497	-		EFB2_01749	0.44	-0.3
1,853,497	-		EFB2_01749	0.44	+0.0
1,853,497	-		EFB2_01749	0.44	-0.1
1,853,497	-		EFB2_01749	0.44	-0.9
1,853,511	+		EFB2_01749	0.48	-0.1
1,853,511	+		EFB2_01749	0.48	+1.5
1,853,512	-		EFB2_01749	0.48	-0.7
1,853,512	-		EFB2_01749	0.48	-1.5
1,853,512	-		EFB2_01749	0.48	-0.4
1,853,512	-		EFB2_01749	0.48	-1.3
1,853,549	-		EFB2_01749	0.59	+0.5
1,853,549	-		EFB2_01749	0.59	-0.5
1,853,570	+		EFB2_01749	0.65	-2.4
1,853,571	-		EFB2_01749	0.66	-0.7
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