Strain Fitness in Escherichia fergusonii Becca around EFB2_01693

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,783,076	-				-0.7
1,783,195	+		EFB2_01692	0.19	-2.1
1,783,241	-		EFB2_01692	0.24	+0.5
1,783,241	-		EFB2_01692	0.24	+1.1
1,783,280	+		EFB2_01692	0.28	+0.3
1,783,281	-		EFB2_01692	0.28	-1.5
1,783,281	-		EFB2_01692	0.28	-0.5
1,783,295	+		EFB2_01692	0.30	+0.1
1,783,309	+		EFB2_01692	0.31	+0.2
1,783,367	+		EFB2_01692	0.38	-0.2
1,783,409	+		EFB2_01692	0.42	-2.5
1,783,440	-		EFB2_01692	0.45	+1.4
1,783,478	+		EFB2_01692	0.49	-0.4
1,783,479	-		EFB2_01692	0.50	-1.8
1,783,525	+		EFB2_01692	0.54	-3.2
1,783,531	+		EFB2_01692	0.55	-1.7
1,783,711	+		EFB2_01692	0.74	+1.1
1,783,711	+		EFB2_01692	0.74	+1.0
1,783,806	-		EFB2_01692	0.84	-0.9
1,783,820	+		EFB2_01692	0.86	+1.1
1,783,820	+		EFB2_01692	0.86	-3.2
1,783,820	+		EFB2_01692	0.86	-2.7
1,783,820	+		EFB2_01692	0.86	-2.9
1,783,820	+		EFB2_01692	0.86	-0.6
1,783,821	-		EFB2_01692	0.86	-0.7
1,783,821	-		EFB2_01692	0.86	-3.1
1,783,821	-		EFB2_01692	0.86	-0.5
1,783,821	-		EFB2_01692	0.86	-0.7
1,783,821	-		EFB2_01692	0.86	-2.8
1,783,852	+		EFB2_01692	0.89	-0.5
1,783,852	+		EFB2_01692	0.89	+0.6
1,783,866	-				-1.1
1,783,866	-				+1.7
1,783,932	+				-0.5
1,783,951	-				+0.2
1,783,982	-				-0.5
1,783,995	-				-2.2
1,783,995	-				-1.1
1,783,995	-				-2.6
1,784,023	-				-0.9
1,784,051	+				+0.9
1,784,051	+				-2.2
1,784,051	+				+0.2
1,784,052	-				-2.1
1,784,052	-				-2.1
1,784,052	-				+0.5
1,784,052	-				-0.5
1,784,053	+				+0.8
1,784,053	+				+0.1
1,784,053	+				-0.0
1,784,053	+				-0.4
1,784,053	+				-1.1
1,784,053	+				-0.2
1,784,053	+				-1.8
1,784,054	-				+2.5
1,784,054	-				-0.2
1,784,054	-				-1.4
1,784,054	-				+1.7
1,784,054	-				+0.8
1,784,054	-				+1.0
1,784,084	-				+0.3
1,784,115	-				-2.9
1,784,187	+		EFB2_01693	0.11	-2.4
1,784,188	-		EFB2_01693	0.11	-0.7
1,784,212	+		EFB2_01693	0.13	+0.6
1,784,212	+		EFB2_01693	0.13	+1.3
1,784,213	-		EFB2_01693	0.13	-1.2
1,784,213	-		EFB2_01693	0.13	-0.6
1,784,228	-		EFB2_01693	0.15	-1.6
1,784,250	+		EFB2_01693	0.16	-0.1
1,784,250	+		EFB2_01693	0.16	+0.6
1,784,250	+		EFB2_01693	0.16	-1.0
1,784,250	+		EFB2_01693	0.16	+1.5
1,784,251	-		EFB2_01693	0.16	+1.5
1,784,251	-		EFB2_01693	0.16	+1.1
1,784,251	-		EFB2_01693	0.16	-0.3
1,784,251	-		EFB2_01693	0.16	-0.2
1,784,251	-		EFB2_01693	0.16	-2.4
1,784,251	-		EFB2_01693	0.16	-2.8
1,784,251	-		EFB2_01693	0.16	+1.3
1,784,251	-		EFB2_01693	0.16	+0.7
1,784,251	-		EFB2_01693	0.16	-1.9
1,784,273	+		EFB2_01693	0.18	+0.1
1,784,330	+		EFB2_01693	0.23	+0.2
1,784,330	+		EFB2_01693	0.23	-1.1
1,784,330	+		EFB2_01693	0.23	-0.4
1,784,330	+		EFB2_01693	0.23	+0.7
1,784,331	-		EFB2_01693	0.23	+1.5
1,784,331	-		EFB2_01693	0.23	+0.1
1,784,360	+		EFB2_01693	0.25	+1.5
1,784,360	+		EFB2_01693	0.25	-2.5
1,784,379	-		EFB2_01693	0.27	-1.5
1,784,391	+		EFB2_01693	0.28	+0.4
1,784,391	+		EFB2_01693	0.28	-0.4
1,784,392	-		EFB2_01693	0.28	-0.4
1,784,392	-		EFB2_01693	0.28	+1.2
1,784,394	+		EFB2_01693	0.28	-2.0
1,784,394	+		EFB2_01693	0.28	-0.2
1,784,394	+		EFB2_01693	0.28	+0.7
1,784,394	+		EFB2_01693	0.28	+0.1
1,784,394	+		EFB2_01693	0.28	-0.1
1,784,394	+		EFB2_01693	0.28	+1.5
1,784,394	+		EFB2_01693	0.28	-1.0
1,784,394	+		EFB2_01693	0.28	+2.3
1,784,394	+		EFB2_01693	0.28	-0.5
1,784,394	+		EFB2_01693	0.28	+0.5
1,784,394	+		EFB2_01693	0.28	+1.3
1,784,394	+		EFB2_01693	0.28	+0.6
1,784,394	+		EFB2_01693	0.28	+1.6
1,784,394	+		EFB2_01693	0.28	+1.0
1,784,394	+		EFB2_01693	0.28	-3.7
1,784,394	+		EFB2_01693	0.28	-1.9
1,784,394	+		EFB2_01693	0.28	-1.5
1,784,394	+		EFB2_01693	0.28	-3.3
1,784,394	+		EFB2_01693	0.28	-0.7
1,784,394	+		EFB2_01693	0.28	-0.5
1,784,394	+		EFB2_01693	0.28	+1.5
1,784,394	+		EFB2_01693	0.28	-1.9
1,784,395	-		EFB2_01693	0.28	-2.4
1,784,395	-		EFB2_01693	0.28	-2.5
1,784,395	-		EFB2_01693	0.28	-1.8
1,784,395	-		EFB2_01693	0.28	+0.9
1,784,395	-		EFB2_01693	0.28	-0.8
1,784,395	-		EFB2_01693	0.28	-1.5
1,784,395	-		EFB2_01693	0.28	+0.6
1,784,395	-		EFB2_01693	0.28	+0.1
1,784,395	-		EFB2_01693	0.28	-1.0
1,784,395	-		EFB2_01693	0.28	+1.1
1,784,395	-		EFB2_01693	0.28	-2.2
1,784,395	-		EFB2_01693	0.28	+1.6
1,784,395	-		EFB2_01693	0.28	+1.7
1,784,395	-		EFB2_01693	0.28	-0.6
1,784,395	-		EFB2_01693	0.28	-0.9
1,784,395	-		EFB2_01693	0.28	-2.5
1,784,395	-		EFB2_01693	0.28	-2.1
1,784,395	-		EFB2_01693	0.28	+0.8
1,784,395	-		EFB2_01693	0.28	+1.4
1,784,395	-		EFB2_01693	0.28	-3.0
1,784,404	+		EFB2_01693	0.29	+0.0
1,784,405	-		EFB2_01693	0.29	+0.7
1,784,423	+		EFB2_01693	0.30	-1.4
1,784,424	-		EFB2_01693	0.30	+0.4
1,784,424	-		EFB2_01693	0.30	-1.7
1,784,436	-		EFB2_01693	0.31	+0.9
1,784,492	+		EFB2_01693	0.36	+0.8
1,784,493	-		EFB2_01693	0.36	-1.7
1,784,528	+		EFB2_01693	0.39	-1.4
1,784,529	-		EFB2_01693	0.39	-0.5
1,784,529	-		EFB2_01693	0.39	+0.6
1,784,537	+		EFB2_01693	0.39	-3.9
1,784,563	+		EFB2_01693	0.41	-0.3
1,784,563	+		EFB2_01693	0.41	+2.2
1,784,563	+		EFB2_01693	0.41	-2.0
1,784,563	+		EFB2_01693	0.41	-2.8
1,784,563	+		EFB2_01693	0.41	+0.2
1,784,563	+		EFB2_01693	0.41	+0.8
1,784,567	+		EFB2_01693	0.42	-0.8
1,784,567	+		EFB2_01693	0.42	+0.3
1,784,567	+		EFB2_01693	0.42	+0.5
1,784,567	+		EFB2_01693	0.42	-0.0
1,784,567	+		EFB2_01693	0.42	+0.1
1,784,567	+		EFB2_01693	0.42	-1.5
1,784,567	+		EFB2_01693	0.42	+0.2
1,784,568	-		EFB2_01693	0.42	-0.4
1,784,568	-		EFB2_01693	0.42	-0.1
1,784,568	-		EFB2_01693	0.42	+2.0
1,784,573	+		EFB2_01693	0.42	+0.1
1,784,573	+		EFB2_01693	0.42	-0.3
1,784,574	-		EFB2_01693	0.42	+0.1
1,784,574	-		EFB2_01693	0.42	+1.1
1,784,594	+		EFB2_01693	0.44	+3.0
1,784,595	-		EFB2_01693	0.44	-1.1
1,784,595	-		EFB2_01693	0.44	-0.9
1,784,595	-		EFB2_01693	0.44	-2.8
1,784,595	-		EFB2_01693	0.44	+0.3
1,784,619	+		EFB2_01693	0.46	+1.0
1,784,620	-		EFB2_01693	0.46	-0.3
1,784,620	-		EFB2_01693	0.46	-1.8
1,784,646	+		EFB2_01693	0.48	-1.2
1,784,646	+		EFB2_01693	0.48	-0.9
1,784,647	-		EFB2_01693	0.48	-1.4
1,784,647	-		EFB2_01693	0.48	-0.2
1,784,672	+		EFB2_01693	0.50	-0.5
1,784,672	+		EFB2_01693	0.50	-0.2
1,784,673	-		EFB2_01693	0.50	+1.0
1,784,673	-		EFB2_01693	0.50	+1.2
1,784,684	+		EFB2_01693	0.51	+0.8
1,784,685	-		EFB2_01693	0.51	-1.9
1,784,699	+		EFB2_01693	0.52	-2.5
1,784,699	+		EFB2_01693	0.52	-2.6
1,784,699	+		EFB2_01693	0.52	-2.6
1,784,700	-		EFB2_01693	0.52	-2.9
1,784,700	-		EFB2_01693	0.52	+0.6
1,784,700	-		EFB2_01693	0.52	+2.6
1,784,706	-		EFB2_01693	0.53	+1.2
1,784,732	+		EFB2_01693	0.55	+2.3
1,784,732	+		EFB2_01693	0.55	+1.7
1,784,732	+		EFB2_01693	0.55	-3.9
1,784,732	+		EFB2_01693	0.55	-2.8
1,784,732	+		EFB2_01693	0.55	-0.9
1,784,882	+		EFB2_01693	0.67	-1.9
1,784,883	-		EFB2_01693	0.67	-0.2
1,784,943	+		EFB2_01693	0.72	-0.2
1,784,969	+		EFB2_01693	0.74	-1.9
1,785,032	+		EFB2_01693	0.79	-0.7
1,785,048	+		EFB2_01693	0.80	-2.8
1,785,048	+		EFB2_01693	0.80	-1.6
1,785,048	+		EFB2_01693	0.80	-1.2
1,785,048	+		EFB2_01693	0.80	-0.7
1,785,048	+		EFB2_01693	0.80	+0.9
1,785,049	-		EFB2_01693	0.80	-2.2
1,785,049	-		EFB2_01693	0.80	-2.0
1,785,049	-		EFB2_01693	0.80	-2.1
1,785,066	+		EFB2_01693	0.82	+0.1
1,785,066	+		EFB2_01693	0.82	+0.5
1,785,067	-		EFB2_01693	0.82	-1.9
1,785,110	+		EFB2_01693	0.85	+1.3
1,785,150	-		EFB2_01693	0.88	-3.5
1,785,150	-		EFB2_01693	0.88	+1.2
1,785,150	-		EFB2_01693	0.88	+1.6
1,785,150	-		EFB2_01693	0.88	-0.8
1,785,150	-		EFB2_01693	0.88	-0.5
1,785,221	-				+0.6
1,785,289	+				-0.6
1,785,313	+				-0.1
1,785,313	+				+0.9
1,785,314	-				-0.6
1,785,314	-				+0.2
1,785,314	-				-0.4
1,785,314	-				-0.4
1,785,314	-				+0.8
1,785,323	+				-0.2
1,785,323	+				+0.9
1,785,324	-				-3.0
1,785,324	-				-1.2
1,785,499	+		EFB2_01694	0.19	-1.5
1,785,500	-		EFB2_01694	0.20	-0.5
1,785,500	-		EFB2_01694	0.20	-0.9
1,785,501	+		EFB2_01694	0.20	-1.4
1,785,502	-		EFB2_01694	0.20	-1.5
1,785,526	-		EFB2_01694	0.23	+1.2
1,785,529	+		EFB2_01694	0.24	-3.0
1,785,529	+		EFB2_01694	0.24	-1.6
1,785,546	-		EFB2_01694	0.26	-2.1
1,785,582	+		EFB2_01694	0.31	-1.2
1,785,582	+		EFB2_01694	0.31	+3.2
1,785,582	+		EFB2_01694	0.31	-1.4
1,785,583	-		EFB2_01694	0.31	+1.0
1,785,583	-		EFB2_01694	0.31	-1.0
1,785,583	-		EFB2_01694	0.31	-0.6
1,785,585	+		EFB2_01694	0.32	+1.5
1,785,585	+		EFB2_01694	0.32	-2.5
1,785,585	+		EFB2_01694	0.32	+2.8
1,785,587	+		EFB2_01694	0.32	+1.5
1,785,644	+		EFB2_01694	0.40	-0.5
1,785,645	-		EFB2_01694	0.40	-1.8
1,785,647	+		EFB2_01694	0.41	-2.1
1,785,659	+		EFB2_01694	0.42	+1.3
1,785,666	+		EFB2_01694	0.43	+0.6
1,785,666	+		EFB2_01694	0.43	+0.7
1,785,667	-		EFB2_01694	0.43	+0.7
1,785,667	-		EFB2_01694	0.43	-2.6
1,785,731	+		EFB2_01694	0.53	+1.1
1,785,815	+		EFB2_01694	0.65	+0.6
1,785,874	+		EFB2_01694	0.73	-2.4
1,785,875	-		EFB2_01694	0.73	+0.9
1,785,940	+		EFB2_01694	0.83	-1.1
1,785,940	+		EFB2_01694	0.83	-0.9
1,785,940	+		EFB2_01694	0.83	+0.9
1,785,940	+		EFB2_01694	0.83	-3.3
1,785,940	+		EFB2_01694	0.83	+0.3
1,785,940	+		EFB2_01694	0.83	+1.2
1,785,941	-		EFB2_01694	0.83	-1.9
1,785,941	-		EFB2_01694	0.83	-1.8
1,785,941	-		EFB2_01694	0.83	-0.0
1,785,941	-		EFB2_01694	0.83	+0.2
1,786,004	+				-1.1
1,786,043	+				+1.0
1,786,090	-				-2.4
1,786,093	+				-0.7
1,786,094	-				+0.5
1,786,099	-				-3.0
1,786,099	-				-1.5
1,786,099	-				+0.5
1,786,102	+				-1.9
1,786,102	+				+2.3
1,786,102	+				-0.1
1,786,103	-				+1.1
1,786,103	-				+1.5
1,786,103	-				-0.1
1,786,103	-				-1.0
1,786,103	-				+1.0
1,786,103	-				-0.2
1,786,103	-				-0.4
1,786,103	-				-0.5
1,786,103	-				+0.4
1,786,103	-				+0.8
1,786,114	-				-0.0
1,786,185	+				+0.1
1,786,241	+				+1.3
1,786,241	+				-2.8
1,786,242	-				-0.5
1,786,247	+				-0.4
1,786,247	+				+0.5
1,786,247	+				-2.6
1,786,247	+				-0.1
1,786,247	+				-1.9
1,786,247	+				-1.5
1,786,247	+				-1.0
1,786,248	-				+1.2
1,786,248	-				+0.4
1,786,248	-				+1.1
1,786,248	-				-0.7
1,786,248	-				-0.7
1,786,249	+				+2.0
1,786,285	+				+1.3
1,786,289	+		EFB2_01695	0.10	-0.5
1,786,289	+		EFB2_01695	0.10	+1.9