Strain Fitness in Escherichia fergusonii Becca around EFB2_00898

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00897 and EFB2_00898 are separated by 110 nucleotidesEFB2_00898 and EFB2_00899 are separated by 310 nucleotides EFB2_00897: EFB2_00897 - Pectate disaccharide-lyase, at 923,567 to 925,801 _00897 EFB2_00898: EFB2_00898 - hypothetical protein, at 925,912 to 926,874 _00898 EFB2_00899: EFB2_00899 - hypothetical protein, at 927,185 to 927,622 _00899 Position (kb) 925 926 927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 924.969 kb on + strand, within EFB2_00897at 924.970 kb on - strand, within EFB2_00897at 925.023 kb on - strand, within EFB2_00897at 925.032 kb on + strand, within EFB2_00897at 925.039 kb on + strand, within EFB2_00897at 925.045 kb on + strand, within EFB2_00897at 925.045 kb on + strand, within EFB2_00897at 925.139 kb on - strand, within EFB2_00897at 925.143 kb on + strand, within EFB2_00897at 925.168 kb on + strand, within EFB2_00897at 925.216 kb on - strand, within EFB2_00897at 925.258 kb on + strand, within EFB2_00897at 925.288 kb on + strand, within EFB2_00897at 925.361 kb on + strand, within EFB2_00897at 925.362 kb on - strand, within EFB2_00897at 925.362 kb on - strand, within EFB2_00897at 925.381 kb on - strand, within EFB2_00897at 925.460 kb on - strand, within EFB2_00897at 925.469 kb on - strand, within EFB2_00897at 925.527 kb on + strand, within EFB2_00897at 925.660 kb on + strandat 925.660 kb on + strandat 925.661 kb on - strandat 925.661 kb on - strandat 925.756 kb on + strandat 925.865 kb on + strandat 925.908 kb on + strandat 925.933 kb on - strandat 925.935 kb on - strandat 925.944 kb on - strandat 925.958 kb on + strandat 925.980 kb on - strandat 926.039 kb on - strand, within EFB2_00898at 926.040 kb on + strand, within EFB2_00898at 926.043 kb on + strand, within EFB2_00898at 926.044 kb on - strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.095 kb on + strand, within EFB2_00898at 926.096 kb on - strand, within EFB2_00898at 926.096 kb on - strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.097 kb on + strand, within EFB2_00898at 926.101 kb on + strand, within EFB2_00898at 926.184 kb on + strand, within EFB2_00898at 926.185 kb on - strand, within EFB2_00898at 926.199 kb on - strand, within EFB2_00898at 926.243 kb on - strand, within EFB2_00898at 926.258 kb on + strand, within EFB2_00898at 926.258 kb on + strand, within EFB2_00898at 926.263 kb on + strand, within EFB2_00898at 926.268 kb on + strand, within EFB2_00898at 926.269 kb on - strand, within EFB2_00898at 926.286 kb on + strand, within EFB2_00898at 926.326 kb on + strand, within EFB2_00898at 926.328 kb on + strand, within EFB2_00898at 926.346 kb on - strand, within EFB2_00898at 926.352 kb on - strand, within EFB2_00898at 926.352 kb on - strand, within EFB2_00898at 926.354 kb on - strand, within EFB2_00898at 926.354 kb on - strand, within EFB2_00898at 926.355 kb on + strand, within EFB2_00898at 926.355 kb on + strand, within EFB2_00898at 926.356 kb on - strand, within EFB2_00898at 926.356 kb on - strand, within EFB2_00898at 926.420 kb on - strand, within EFB2_00898at 926.503 kb on - strand, within EFB2_00898at 926.534 kb on - strand, within EFB2_00898at 926.570 kb on - strand, within EFB2_00898at 926.610 kb on + strand, within EFB2_00898at 926.610 kb on + strand, within EFB2_00898at 926.639 kb on + strand, within EFB2_00898at 926.644 kb on + strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.645 kb on - strand, within EFB2_00898at 926.657 kb on - strand, within EFB2_00898at 926.657 kb on - strand, within EFB2_00898at 926.659 kb on - strand, within EFB2_00898at 926.685 kb on + strand, within EFB2_00898at 926.685 kb on + strand, within EFB2_00898at 926.689 kb on - strand, within EFB2_00898at 926.689 kb on - strand, within EFB2_00898at 926.777 kb on + strand, within EFB2_00898at 926.778 kb on - strandat 926.779 kb on + strandat 926.898 kb on + strandat 926.904 kb on + strandat 926.911 kb on + strandat 926.924 kb on - strandat 926.928 kb on - strandat 926.968 kb on + strandat 926.976 kb on + strandat 926.979 kb on + strandat 926.980 kb on - strandat 926.980 kb on - strandat 926.983 kb on - strandat 927.017 kb on + strandat 927.054 kb on + strandat 927.086 kb on + strandat 927.088 kb on + strandat 927.094 kb on - strandat 927.125 kb on + strandat 927.161 kb on - strandat 927.161 kb on - strandat 927.161 kb on - strandat 927.203 kb on - strandat 927.213 kb on + strandat 927.219 kb on - strandat 927.228 kb on - strandat 927.260 kb on - strand, within EFB2_00899at 927.342 kb on + strand, within EFB2_00899at 927.343 kb on - strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.346 kb on + strand, within EFB2_00899at 927.348 kb on + strand, within EFB2_00899at 927.403 kb on + strand, within EFB2_00899at 927.596 kb on + strandat 927.740 kb on + strandat 927.740 kb on + strandat 927.773 kb on + strandat 927.773 kb on + strandat 927.835 kb on + strandat 927.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
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924,969 + EFB2_00897 0.63 -1.4
924,970 - EFB2_00897 0.63 -0.0
925,023 - EFB2_00897 0.65 +0.5
925,032 + EFB2_00897 0.66 -0.2
925,039 + EFB2_00897 0.66 -3.7
925,045 + EFB2_00897 0.66 -2.9
925,045 + EFB2_00897 0.66 -0.4
925,139 - EFB2_00897 0.70 +0.5
925,143 + EFB2_00897 0.71 +2.1
925,168 + EFB2_00897 0.72 -1.5
925,216 - EFB2_00897 0.74 +0.4
925,258 + EFB2_00897 0.76 -0.7
925,288 + EFB2_00897 0.77 +0.0
925,361 + EFB2_00897 0.80 -2.6
925,362 - EFB2_00897 0.80 +1.8
925,362 - EFB2_00897 0.80 +1.8
925,381 - EFB2_00897 0.81 +0.7
925,460 - EFB2_00897 0.85 +1.9
925,469 - EFB2_00897 0.85 -0.6
925,527 + EFB2_00897 0.88 -2.8
925,660 + +0.2
925,660 + -0.3
925,661 - +0.5
925,661 - +0.3
925,756 + -2.0
925,865 + +1.1
925,908 + +1.1
925,933 - +0.4
925,935 - -1.3
925,944 - +0.9
925,958 + +0.5
925,980 - +0.4
926,039 - EFB2_00898 0.13 +1.0
926,040 + EFB2_00898 0.13 -2.7
926,043 + EFB2_00898 0.14 -0.6
926,044 - EFB2_00898 0.14 +0.8
926,095 + EFB2_00898 0.19 -0.1
926,095 + EFB2_00898 0.19 -0.8
926,095 + EFB2_00898 0.19 -1.6
926,095 + EFB2_00898 0.19 -1.4
926,096 - EFB2_00898 0.19 -1.1
926,096 - EFB2_00898 0.19 +0.4
926,097 + EFB2_00898 0.19 +0.2
926,097 + EFB2_00898 0.19 -1.5
926,097 + EFB2_00898 0.19 -2.0
926,097 + EFB2_00898 0.19 +1.5
926,101 + EFB2_00898 0.20 +0.6
926,184 + EFB2_00898 0.28 -3.6
926,185 - EFB2_00898 0.28 -2.0
926,199 - EFB2_00898 0.30 +0.3
926,243 - EFB2_00898 0.34 +1.5
926,258 + EFB2_00898 0.36 +0.8
926,258 + EFB2_00898 0.36 +0.2
926,263 + EFB2_00898 0.36 -2.1
926,268 + EFB2_00898 0.37 -3.3
926,269 - EFB2_00898 0.37 -1.3
926,286 + EFB2_00898 0.39 +1.8
926,326 + EFB2_00898 0.43 -1.2
926,328 + EFB2_00898 0.43 -2.2
926,346 - EFB2_00898 0.45 +1.0
926,352 - EFB2_00898 0.46 +1.1
926,352 - EFB2_00898 0.46 +1.7
926,354 - EFB2_00898 0.46 +1.6
926,354 - EFB2_00898 0.46 -1.9
926,355 + EFB2_00898 0.46 -2.8
926,355 + EFB2_00898 0.46 +0.9
926,356 - EFB2_00898 0.46 -1.1
926,356 - EFB2_00898 0.46 +0.8
926,420 - EFB2_00898 0.53 -4.4
926,503 - EFB2_00898 0.61 +0.8
926,534 - EFB2_00898 0.65 +1.4
926,570 - EFB2_00898 0.68 -0.7
926,610 + EFB2_00898 0.72 -1.8
926,610 + EFB2_00898 0.72 -1.9
926,639 + EFB2_00898 0.75 +0.3
926,644 + EFB2_00898 0.76 -0.9
926,645 - EFB2_00898 0.76 -0.8
926,645 - EFB2_00898 0.76 +0.4
926,645 - EFB2_00898 0.76 +0.5
926,657 - EFB2_00898 0.77 +2.1
926,657 - EFB2_00898 0.77 +0.1
926,659 - EFB2_00898 0.78 +0.5
926,685 + EFB2_00898 0.80 +2.1
926,685 + EFB2_00898 0.80 -0.1
926,689 - EFB2_00898 0.81 -0.5
926,689 - EFB2_00898 0.81 -1.6
926,777 + EFB2_00898 0.90 +0.3
926,778 - +0.4
926,779 + -1.8
926,898 + +1.6
926,904 + -0.7
926,911 + -3.1
926,924 - -0.4
926,928 - -2.4
926,968 + -0.6
926,976 + -3.0
926,979 + -1.4
926,980 - -2.1
926,980 - +1.9
926,983 - -0.7
927,017 + -2.2
927,054 + +0.5
927,086 + -0.1
927,088 + -0.9
927,094 - -1.1
927,125 + +1.4
927,161 - -0.3
927,161 - -2.1
927,161 - +0.7
927,203 - -2.2
927,213 + -1.2
927,219 - +1.8
927,228 - -2.9
927,260 - EFB2_00899 0.17 +1.1
927,342 + EFB2_00899 0.36 -0.2
927,343 - EFB2_00899 0.36 +0.4
927,346 + EFB2_00899 0.37 -0.8
927,346 + EFB2_00899 0.37 +0.5
927,346 + EFB2_00899 0.37 +1.2
927,346 + EFB2_00899 0.37 +1.6
927,348 + EFB2_00899 0.37 -1.0
927,403 + EFB2_00899 0.50 -0.6
927,596 + -0.1
927,740 + -1.3
927,740 + +0.1
927,773 + -1.3
927,773 + -1.6
927,835 + -0.1
927,835 + +1.0

Or see this region's nucleotide sequence