Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05392

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05389 and BACOVA_05390 are separated by 20 nucleotidesBACOVA_05390 and BACOVA_05391 are separated by 156 nucleotidesBACOVA_05391 and BACOVA_05392 are separated by 205 nucleotidesBACOVA_05392 and BACOVA_05393 are separated by 56 nucleotides BACOVA_05389: BACOVA_05389 - dephospho-CoA kinase, at 871,630 to 872,247 _05389 BACOVA_05390: BACOVA_05390 - hypothetical protein, at 872,268 to 872,696 _05390 BACOVA_05391: BACOVA_05391 - hypothetical protein, at 872,853 to 872,966 _05391 BACOVA_05392: BACOVA_05392 - hypothetical protein, at 873,172 to 873,420 _05392 BACOVA_05393: BACOVA_05393 - ATP-dependent chaperone protein ClpB, at 873,477 to 876,065 _05393 Position (kb) 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 872.193 kb on + strandat 872.204 kb on + strandat 872.208 kb on + strandat 872.209 kb on - strandat 872.260 kb on + strandat 872.261 kb on - strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.263 kb on - strandat 872.263 kb on - strandat 872.263 kb on - strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.265 kb on - strandat 872.265 kb on - strandat 872.311 kb on - strand, within BACOVA_05390at 872.311 kb on - strand, within BACOVA_05390at 872.319 kb on - strand, within BACOVA_05390at 872.385 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on - strand, within BACOVA_05390at 872.420 kb on - strand, within BACOVA_05390at 872.420 kb on - strand, within BACOVA_05390at 872.455 kb on - strand, within BACOVA_05390at 872.473 kb on + strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.505 kb on - strand, within BACOVA_05390at 872.523 kb on - strand, within BACOVA_05390at 872.545 kb on - strand, within BACOVA_05390at 872.557 kb on + strand, within BACOVA_05390at 872.558 kb on - strand, within BACOVA_05390at 872.590 kb on + strand, within BACOVA_05390at 872.590 kb on + strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.620 kb on - strand, within BACOVA_05390at 872.694 kb on + strandat 872.769 kb on - strandat 872.778 kb on + strandat 872.779 kb on - strandat 872.796 kb on - strandat 872.801 kb on + strandat 872.825 kb on + strandat 872.840 kb on + strandat 872.843 kb on - strandat 872.869 kb on + strand, within BACOVA_05391at 872.869 kb on + strand, within BACOVA_05391at 872.901 kb on - strand, within BACOVA_05391at 872.926 kb on + strand, within BACOVA_05391at 872.927 kb on - strand, within BACOVA_05391at 872.945 kb on - strand, within BACOVA_05391at 872.950 kb on + strand, within BACOVA_05391at 872.953 kb on + strand, within BACOVA_05391at 872.978 kb on + strandat 872.978 kb on + strandat 872.979 kb on - strandat 872.986 kb on + strandat 872.996 kb on + strandat 873.025 kb on + strandat 873.025 kb on + strandat 873.026 kb on - strandat 873.026 kb on - strandat 873.030 kb on - strandat 873.030 kb on - strandat 873.033 kb on + strandat 873.033 kb on + strandat 873.049 kb on - strandat 873.049 kb on - strandat 873.049 kb on - strandat 873.067 kb on - strandat 873.074 kb on - strandat 873.105 kb on + strandat 873.106 kb on - strandat 873.108 kb on + strandat 873.109 kb on - strandat 873.109 kb on - strandat 873.134 kb on + strandat 873.189 kb on + strandat 873.198 kb on - strand, within BACOVA_05392at 873.230 kb on + strand, within BACOVA_05392at 873.230 kb on + strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392at 873.263 kb on + strand, within BACOVA_05392at 873.263 kb on + strand, within BACOVA_05392at 873.263 kb on + strand, within BACOVA_05392at 873.271 kb on + strand, within BACOVA_05392at 873.320 kb on + strand, within BACOVA_05392at 873.321 kb on - strand, within BACOVA_05392at 873.321 kb on - strand, within BACOVA_05392at 873.352 kb on + strand, within BACOVA_05392at 873.352 kb on + strand, within BACOVA_05392at 873.353 kb on - strand, within BACOVA_05392at 873.403 kb on - strandat 873.403 kb on - strandat 873.418 kb on + strandat 873.418 kb on + strandat 873.419 kb on - strandat 873.432 kb on - strandat 873.440 kb on + strandat 873.460 kb on + strandat 873.460 kb on + strandat 873.461 kb on - strandat 873.464 kb on + strandat 873.577 kb on - strandat 873.580 kb on + strandat 873.726 kb on + strandat 873.726 kb on + strandat 873.759 kb on + strand, within BACOVA_05393at 873.822 kb on - strand, within BACOVA_05393at 873.897 kb on + strand, within BACOVA_05393at 873.899 kb on + strand, within BACOVA_05393at 873.899 kb on + strand, within BACOVA_05393at 873.901 kb on + strand, within BACOVA_05393at 873.901 kb on + strand, within BACOVA_05393at 873.902 kb on - strand, within BACOVA_05393at 873.908 kb on + strand, within BACOVA_05393at 874.076 kb on + strand, within BACOVA_05393at 874.076 kb on + strand, within BACOVA_05393at 874.110 kb on + strand, within BACOVA_05393at 874.110 kb on + strand, within BACOVA_05393at 874.111 kb on - strand, within BACOVA_05393at 874.242 kb on - strand, within BACOVA_05393at 874.245 kb on + strand, within BACOVA_05393at 874.246 kb on - strand, within BACOVA_05393at 874.400 kb on + strand, within BACOVA_05393

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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872,193 + +0.9
872,204 + -2.0
872,208 + +0.1
872,209 - +0.7
872,260 + -3.2
872,261 - -0.9
872,262 + +0.1
872,262 + +0.2
872,262 + -0.9
872,262 + -2.5
872,262 + +0.4
872,262 + -0.5
872,263 - +0.7
872,263 - -0.9
872,263 - -0.6
872,264 + -1.3
872,264 + +0.8
872,264 + -0.1
872,264 + +0.4
872,265 - -1.6
872,265 - -0.8
872,311 - BACOVA_05390 0.10 -0.9
872,311 - BACOVA_05390 0.10 +0.7
872,319 - BACOVA_05390 0.12 -1.1
872,385 + BACOVA_05390 0.27 +0.1
872,419 + BACOVA_05390 0.35 -1.0
872,419 + BACOVA_05390 0.35 -1.5
872,419 + BACOVA_05390 0.35 -0.1
872,419 - BACOVA_05390 0.35 -0.2
872,420 - BACOVA_05390 0.35 -1.0
872,420 - BACOVA_05390 0.35 +0.1
872,455 - BACOVA_05390 0.44 -1.3
872,473 + BACOVA_05390 0.48 +0.4
872,474 - BACOVA_05390 0.48 +0.1
872,474 - BACOVA_05390 0.48 -0.6
872,474 - BACOVA_05390 0.48 +0.1
872,505 - BACOVA_05390 0.55 -1.4
872,523 - BACOVA_05390 0.59 +1.3
872,545 - BACOVA_05390 0.65 +0.0
872,557 + BACOVA_05390 0.67 -1.5
872,558 - BACOVA_05390 0.68 +0.7
872,590 + BACOVA_05390 0.75 -0.2
872,590 + BACOVA_05390 0.75 -0.9
872,591 - BACOVA_05390 0.75 +0.1
872,591 - BACOVA_05390 0.75 -1.1
872,591 - BACOVA_05390 0.75 -0.9
872,620 - BACOVA_05390 0.82 -0.2
872,694 + +0.7
872,769 - -0.5
872,778 + -1.1
872,779 - -0.7
872,796 - +0.6
872,801 + +0.2
872,825 + -0.3
872,840 + -0.5
872,843 - +1.3
872,869 + BACOVA_05391 0.14 +1.0
872,869 + BACOVA_05391 0.14 +0.2
872,901 - BACOVA_05391 0.42 +0.4
872,926 + BACOVA_05391 0.64 +1.1
872,927 - BACOVA_05391 0.65 -0.3
872,945 - BACOVA_05391 0.81 +1.4
872,950 + BACOVA_05391 0.85 +0.0
872,953 + BACOVA_05391 0.88 +0.4
872,978 + +0.8
872,978 + -0.3
872,979 - -0.0
872,986 + +0.1
872,996 + -0.3
873,025 + +0.9
873,025 + -1.0
873,026 - +0.6
873,026 - +0.8
873,030 - +0.8
873,030 - -0.9
873,033 + +0.4
873,033 + -0.8
873,049 - -0.1
873,049 - +0.6
873,049 - -0.6
873,067 - -0.1
873,074 - +0.0
873,105 + -0.7
873,106 - -1.0
873,108 + +0.4
873,109 - -0.3
873,109 - +0.1
873,134 + +0.4
873,189 + +1.1
873,198 - BACOVA_05392 0.10 +0.8
873,230 + BACOVA_05392 0.23 +0.2
873,230 + BACOVA_05392 0.23 +0.7
873,231 - BACOVA_05392 0.24 -0.9
873,231 - BACOVA_05392 0.24 -0.0
873,231 - BACOVA_05392 0.24 -0.0
873,263 + BACOVA_05392 0.37 +1.7
873,263 + BACOVA_05392 0.37 +0.1
873,263 + BACOVA_05392 0.37 -1.2
873,271 + BACOVA_05392 0.40 +0.5
873,320 + BACOVA_05392 0.59 +0.9
873,321 - BACOVA_05392 0.60 -1.0
873,321 - BACOVA_05392 0.60 +0.1
873,352 + BACOVA_05392 0.72 +0.1
873,352 + BACOVA_05392 0.72 -0.7
873,353 - BACOVA_05392 0.73 +0.7
873,403 - +0.2
873,403 - -1.2
873,418 + -0.3
873,418 + -1.7
873,419 - +1.9
873,432 - -0.8
873,440 + +1.4
873,460 + +0.4
873,460 + -0.6
873,461 - -0.2
873,464 + +0.5
873,577 - -0.5
873,580 + -1.1
873,726 + -1.2
873,726 + +1.2
873,759 + BACOVA_05393 0.11 -0.5
873,822 - BACOVA_05393 0.13 -0.3
873,897 + BACOVA_05393 0.16 -0.1
873,899 + BACOVA_05393 0.16 -0.9
873,899 + BACOVA_05393 0.16 +0.8
873,901 + BACOVA_05393 0.16 -0.3
873,901 + BACOVA_05393 0.16 -1.1
873,902 - BACOVA_05393 0.16 -0.2
873,908 + BACOVA_05393 0.17 -0.5
874,076 + BACOVA_05393 0.23 -0.8
874,076 + BACOVA_05393 0.23 -1.3
874,110 + BACOVA_05393 0.24 +0.2
874,110 + BACOVA_05393 0.24 +0.1
874,111 - BACOVA_05393 0.24 +1.0
874,242 - BACOVA_05393 0.30 +0.2
874,245 + BACOVA_05393 0.30 -0.6
874,246 - BACOVA_05393 0.30 -0.4
874,400 + BACOVA_05393 0.36 -0.8

Or see this region's nucleotide sequence