Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04965 and BACOVA_04966 are separated by 80 nucleotides BACOVA_04966 and BACOVA_04967 are separated by 181 nucleotides
BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712
_04965
BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877
_04966
BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457
_04967
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 407.831 kb on + strand, within BACOVA_04965 at 407.858 kb on + strand, within BACOVA_04965 at 407.903 kb on - strand, within BACOVA_04965 at 407.905 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 408.038 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.062 kb on + strand, within BACOVA_04965 at 408.064 kb on + strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.153 kb on - strand, within BACOVA_04965 at 408.219 kb on - strand, within BACOVA_04965 at 408.240 kb on + strand, within BACOVA_04965 at 408.241 kb on - strand, within BACOVA_04965 at 408.302 kb on + strand, within BACOVA_04965 at 408.326 kb on + strand, within BACOVA_04965 at 408.327 kb on - strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.329 kb on - strand, within BACOVA_04965 at 408.397 kb on - strand, within BACOVA_04965 at 408.478 kb on + strand, within BACOVA_04965 at 408.483 kb on + strand, within BACOVA_04965 at 408.520 kb on - strand, within BACOVA_04965 at 408.575 kb on - strand at 408.592 kb on + strand at 408.592 kb on + strand at 408.596 kb on + strand at 408.596 kb on + strand at 408.597 kb on - strand at 408.597 kb on - strand at 408.599 kb on - strand at 408.599 kb on - strand at 408.603 kb on - strand at 408.603 kb on - strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.638 kb on - strand at 408.638 kb on - strand at 408.644 kb on + strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.743 kb on - strand at 408.747 kb on + strand at 408.747 kb on + strand at 408.805 kb on + strand at 408.806 kb on - strand at 408.807 kb on + strand at 408.807 kb on + strand at 408.809 kb on + strand at 408.809 kb on + strand at 408.810 kb on - strand at 408.839 kb on + strand at 408.954 kb on + strand at 408.958 kb on + strand at 409.028 kb on + strand, within BACOVA_04966 at 409.047 kb on + strand, within BACOVA_04966 at 409.066 kb on + strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.069 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.154 kb on + strand, within BACOVA_04966 at 409.169 kb on + strand, within BACOVA_04966 at 409.170 kb on - strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.221 kb on + strand, within BACOVA_04966 at 409.247 kb on - strand, within BACOVA_04966 at 409.257 kb on + strand, within BACOVA_04966 at 409.258 kb on - strand, within BACOVA_04966 at 409.262 kb on + strand, within BACOVA_04966 at 409.291 kb on - strand, within BACOVA_04966 at 409.295 kb on - strand, within BACOVA_04966 at 409.309 kb on - strand, within BACOVA_04966 at 409.370 kb on - strand, within BACOVA_04966 at 409.470 kb on + strand, within BACOVA_04966 at 409.490 kb on - strand, within BACOVA_04966 at 409.491 kb on + strand, within BACOVA_04966 at 409.500 kb on + strand, within BACOVA_04966 at 409.501 kb on - strand, within BACOVA_04966 at 409.506 kb on - strand, within BACOVA_04966 at 409.530 kb on - strand, within BACOVA_04966 at 409.538 kb on + strand, within BACOVA_04966 at 409.578 kb on + strand, within BACOVA_04966 at 409.588 kb on - strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.668 kb on + strand, within BACOVA_04966 at 409.702 kb on + strand, within BACOVA_04966 at 409.703 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.723 kb on + strand, within BACOVA_04966 at 409.755 kb on + strand, within BACOVA_04966 at 409.798 kb on + strand, within BACOVA_04966 at 409.810 kb on + strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.929 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.944 kb on + strand, within BACOVA_04966 at 409.945 kb on - strand, within BACOVA_04966 at 409.980 kb on + strand, within BACOVA_04966 at 410.007 kb on + strand, within BACOVA_04966 at 410.098 kb on + strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.114 kb on + strand, within BACOVA_04966 at 410.169 kb on - strand, within BACOVA_04966 at 410.240 kb on - strand, within BACOVA_04966 at 410.343 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.419 kb on - strand, within BACOVA_04966 at 410.442 kb on + strand, within BACOVA_04966 at 410.446 kb on + strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.452 kb on - strand, within BACOVA_04966 at 410.458 kb on - strand, within BACOVA_04966 at 410.476 kb on + strand, within BACOVA_04966 at 410.483 kb on + strand, within BACOVA_04966 at 410.491 kb on + strand, within BACOVA_04966 at 410.545 kb on + strand, within BACOVA_04966 at 410.546 kb on - strand, within BACOVA_04966 at 410.578 kb on - strand, within BACOVA_04966 at 410.622 kb on + strand, within BACOVA_04966 at 410.628 kb on + strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.651 kb on - strand, within BACOVA_04966 at 410.654 kb on - strand, within BACOVA_04966 at 410.687 kb on + strand at 410.687 kb on + strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.691 kb on - strand at 410.715 kb on + strand at 410.715 kb on + strand at 410.719 kb on + strand at 410.719 kb on + strand at 410.722 kb on - strand at 410.722 kb on - strand at 410.724 kb on - strand at 410.783 kb on - strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.818 kb on - strand at 410.830 kb on - strand at 410.835 kb on - strand at 410.835 kb on - strand at 410.842 kb on + strand at 410.842 kb on + strand at 410.843 kb on - strand at 410.847 kb on - strand at 410.847 kb on - strand at 410.903 kb on + strand at 410.904 kb on - strand at 410.967 kb on - strand at 410.967 kb on - strand at 410.986 kb on + strand at 410.986 kb on + strand at 410.987 kb on - strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.989 kb on - strand at 410.997 kb on + strand at 410.998 kb on - strand at 411.028 kb on - strand at 411.035 kb on + strand at 411.035 kb on + strand at 411.052 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.168 kb on + strand at 411.169 kb on - strand at 411.190 kb on + strand at 411.191 kb on - strand at 411.191 kb on - strand at 411.223 kb on - strand at 411.233 kb on - strand at 411.241 kb on + strand at 411.247 kb on - strand at 411.247 kb on - strand at 411.301 kb on - strand at 411.306 kb on + strand at 411.377 kb on - strand at 411.380 kb on - strand at 411.380 kb on - strand at 411.382 kb on - strand at 411.426 kb on - strand, within BACOVA_04967 at 411.440 kb on + strand, within BACOVA_04967 at 411.441 kb on - strand, within BACOVA_04967 at 411.464 kb on + strand, within BACOVA_04967 at 411.465 kb on - strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.475 kb on + strand, within BACOVA_04967 at 411.491 kb on + strand, within BACOVA_04967 at 411.528 kb on + strand, within BACOVA_04967 at 411.553 kb on + strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.598 kb on + strand, within BACOVA_04967 at 411.617 kb on - strand, within BACOVA_04967 at 411.625 kb on + strand, within BACOVA_04967 at 411.626 kb on - strand, within BACOVA_04967 at 411.630 kb on - strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.712 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.793 kb on + strand, within BACOVA_04967 at 411.846 kb on - strand, within BACOVA_04967 at 411.849 kb on + strand, within BACOVA_04967
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 407,831 + BACOVA_04965 0.49 -1.1 407,858 + BACOVA_04965 0.50 +0.3 407,903 - BACOVA_04965 0.53 +1.2 407,905 + BACOVA_04965 0.53 -0.2 407,929 + BACOVA_04965 0.54 -0.1 407,929 + BACOVA_04965 0.54 -0.3 408,038 - BACOVA_04965 0.61 +0.9 408,042 - BACOVA_04965 0.61 -0.5 408,042 - BACOVA_04965 0.61 +1.1 408,062 + BACOVA_04965 0.62 -0.5 408,064 + BACOVA_04965 0.62 -0.3 408,125 - BACOVA_04965 0.66 -0.2 408,125 - BACOVA_04965 0.66 +0.6 408,134 - BACOVA_04965 0.66 +1.4 408,134 - BACOVA_04965 0.66 +0.2 408,134 - BACOVA_04965 0.66 +0.2 408,153 - BACOVA_04965 0.67 +1.6 408,219 - BACOVA_04965 0.71 +0.7 408,240 + BACOVA_04965 0.73 -0.0 408,241 - BACOVA_04965 0.73 -0.5 408,302 + BACOVA_04965 0.76 +0.1 408,326 + BACOVA_04965 0.78 +0.8 408,327 - BACOVA_04965 0.78 -1.5 408,328 + BACOVA_04965 0.78 -0.4 408,328 + BACOVA_04965 0.78 +0.1 408,329 - BACOVA_04965 0.78 +0.1 408,397 - BACOVA_04965 0.82 -0.6 408,478 + BACOVA_04965 0.86 -0.2 408,483 + BACOVA_04965 0.87 -1.2 408,520 - BACOVA_04965 0.89 -0.7 408,575 - -0.8 408,592 + -0.9 408,592 + -0.5 408,596 + -0.8 408,596 + -0.6 408,597 - -0.5 408,597 - -0.1 408,599 - +0.5 408,599 - -0.0 408,603 - -0.3 408,603 - -0.9 408,637 + -0.9 408,637 + -0.4 408,637 + -0.6 408,638 - +0.5 408,638 - -1.9 408,644 + -1.0 408,737 - -0.0 408,737 - -0.6 408,737 - -1.7 408,743 - +1.0 408,747 + -1.3 408,747 + -0.6 408,805 + -0.2 408,806 - +0.2 408,807 + -0.7 408,807 + -0.3 408,809 + -0.4 408,809 + -0.8 408,810 - +0.6 408,839 + +0.7 408,954 + -0.2 408,958 + +1.2 409,028 + BACOVA_04966 0.11 +1.1 409,047 + BACOVA_04966 0.12 +0.1 409,066 + BACOVA_04966 0.13 -0.6 409,067 - BACOVA_04966 0.13 -0.2 409,067 - BACOVA_04966 0.13 +0.1 409,069 - BACOVA_04966 0.13 -1.3 409,126 - BACOVA_04966 0.16 +1.4 409,126 - BACOVA_04966 0.16 -0.1 409,154 + BACOVA_04966 0.17 -0.2 409,169 + BACOVA_04966 0.18 +0.0 409,170 - BACOVA_04966 0.18 -0.8 409,215 + BACOVA_04966 0.20 +0.4 409,215 + BACOVA_04966 0.20 -0.0 409,221 + BACOVA_04966 0.21 +0.2 409,247 - BACOVA_04966 0.22 +0.4 409,257 + BACOVA_04966 0.22 -1.2 409,258 - BACOVA_04966 0.22 -0.5 409,262 + BACOVA_04966 0.22 -0.1 409,291 - BACOVA_04966 0.24 +0.5 409,295 - BACOVA_04966 0.24 +0.0 409,309 - BACOVA_04966 0.25 +0.7 409,370 - BACOVA_04966 0.28 +0.2 409,470 + BACOVA_04966 0.32 +1.0 409,490 - BACOVA_04966 0.33 -0.3 409,491 + BACOVA_04966 0.33 +0.6 409,500 + BACOVA_04966 0.34 -0.6 409,501 - BACOVA_04966 0.34 -0.0 409,506 - BACOVA_04966 0.34 -0.7 409,530 - BACOVA_04966 0.35 -0.2 409,538 + BACOVA_04966 0.36 -0.9 409,578 + BACOVA_04966 0.38 -0.2 409,588 - BACOVA_04966 0.38 +0.2 409,597 + BACOVA_04966 0.39 +0.7 409,597 + BACOVA_04966 0.39 +0.3 409,597 + BACOVA_04966 0.39 +1.1 409,662 + BACOVA_04966 0.42 -2.0 409,662 + BACOVA_04966 0.42 -0.0 409,668 + BACOVA_04966 0.42 +1.2 409,702 + BACOVA_04966 0.44 -0.9 409,703 - BACOVA_04966 0.44 -0.8 409,711 - BACOVA_04966 0.44 +0.2 409,711 - BACOVA_04966 0.44 +0.1 409,723 + BACOVA_04966 0.45 +0.5 409,755 + BACOVA_04966 0.46 +0.2 409,798 + BACOVA_04966 0.48 -1.3 409,810 + BACOVA_04966 0.49 +0.5 409,876 - BACOVA_04966 0.52 +0.5 409,876 - BACOVA_04966 0.52 -0.1 409,929 + BACOVA_04966 0.54 +0.3 409,935 + BACOVA_04966 0.55 +0.1 409,935 + BACOVA_04966 0.55 +0.1 409,944 + BACOVA_04966 0.55 -1.2 409,945 - BACOVA_04966 0.55 +1.0 409,980 + BACOVA_04966 0.57 -0.6 410,007 + BACOVA_04966 0.58 +0.7 410,098 + BACOVA_04966 0.63 -0.6 410,099 - BACOVA_04966 0.63 +0.9 410,099 - BACOVA_04966 0.63 -0.3 410,114 + BACOVA_04966 0.63 +0.7 410,169 - BACOVA_04966 0.66 -1.0 410,240 - BACOVA_04966 0.69 +0.4 410,343 + BACOVA_04966 0.74 -0.4 410,355 + BACOVA_04966 0.75 +0.1 410,355 + BACOVA_04966 0.75 -0.4 410,356 - BACOVA_04966 0.75 -0.7 410,356 - BACOVA_04966 0.75 +1.1 410,356 - BACOVA_04966 0.75 +0.7 410,419 - BACOVA_04966 0.78 +0.4 410,442 + BACOVA_04966 0.79 -0.3 410,446 + BACOVA_04966 0.79 -2.0 410,447 - BACOVA_04966 0.79 -1.1 410,447 - BACOVA_04966 0.79 +0.2 410,447 - BACOVA_04966 0.79 -0.7 410,447 - BACOVA_04966 0.79 +1.5 410,452 - BACOVA_04966 0.80 +0.4 410,458 - BACOVA_04966 0.80 +0.0 410,476 + BACOVA_04966 0.81 +0.3 410,483 + BACOVA_04966 0.81 -0.0 410,491 + BACOVA_04966 0.81 +0.4 410,545 + BACOVA_04966 0.84 -0.6 410,546 - BACOVA_04966 0.84 -0.1 410,578 - BACOVA_04966 0.86 -0.7 410,622 + BACOVA_04966 0.88 -0.8 410,628 + BACOVA_04966 0.88 +1.1 410,629 - BACOVA_04966 0.88 -0.4 410,629 - BACOVA_04966 0.88 +0.6 410,638 + BACOVA_04966 0.88 -0.9 410,638 + BACOVA_04966 0.88 +0.3 410,651 - BACOVA_04966 0.89 -1.1 410,654 - BACOVA_04966 0.89 +0.6 410,687 + -0.6 410,687 + +0.2 410,687 + -0.5 410,688 - +0.3 410,691 - -0.1 410,715 + -0.0 410,715 + -0.1 410,719 + -0.3 410,719 + -1.4 410,722 - -0.0 410,722 - -1.6 410,724 - +0.8 410,783 - +0.6 410,787 + -0.9 410,787 + -0.1 410,787 + -0.5 410,818 - +0.3 410,830 - -0.1 410,835 - +0.4 410,835 - -1.2 410,842 + +0.5 410,842 + -0.1 410,843 - -1.7 410,847 - -0.5 410,847 - +0.1 410,903 + -0.6 410,904 - -0.5 410,967 - -0.1 410,967 - +0.5 410,986 + -0.7 410,986 + +0.5 410,987 - +1.6 410,988 + +1.0 410,988 + -0.1 410,988 + -1.4 410,989 - -0.6 410,997 + -1.7 410,998 - -0.5 411,028 - +0.4 411,035 + +1.4 411,035 + -1.4 411,052 + -0.2 411,054 + +0.0 411,054 + -0.6 411,054 + -0.2 411,168 + +1.6 411,169 - -0.4 411,190 + +0.7 411,191 - +0.9 411,191 - -0.6 411,223 - +0.3 411,233 - -0.1 411,241 + -1.2 411,247 - -1.3 411,247 - -0.3 411,301 - -0.5 411,306 + -0.0 411,377 - -0.1 411,380 - -0.9 411,380 - +0.8 411,382 - -0.0 411,426 - BACOVA_04967 0.11 +0.1 411,440 + BACOVA_04967 0.11 +0.2 411,441 - BACOVA_04967 0.11 +0.1 411,464 + BACOVA_04967 0.12 -1.6 411,465 - BACOVA_04967 0.12 +1.1 411,466 + BACOVA_04967 0.12 +0.1 411,466 + BACOVA_04967 0.12 +0.1 411,472 + BACOVA_04967 0.12 -0.1 411,472 + BACOVA_04967 0.12 -1.4 411,475 + BACOVA_04967 0.12 -0.3 411,491 + BACOVA_04967 0.13 -1.8 411,528 + BACOVA_04967 0.14 +0.5 411,553 + BACOVA_04967 0.15 -0.1 411,554 - BACOVA_04967 0.15 +0.7 411,554 - BACOVA_04967 0.15 +1.1 411,554 - BACOVA_04967 0.15 +0.8 411,598 + BACOVA_04967 0.16 -1.3 411,617 - BACOVA_04967 0.16 +0.2 411,625 + BACOVA_04967 0.17 +0.2 411,626 - BACOVA_04967 0.17 -0.6 411,630 - BACOVA_04967 0.17 +0.5 411,632 + BACOVA_04967 0.17 +0.4 411,632 + BACOVA_04967 0.17 -0.3 411,636 + BACOVA_04967 0.17 -0.5 411,636 + BACOVA_04967 0.17 -0.0 411,636 + BACOVA_04967 0.17 -1.1 411,637 - BACOVA_04967 0.17 -0.2 411,637 - BACOVA_04967 0.17 +0.2 411,712 - BACOVA_04967 0.19 +1.3 411,767 - BACOVA_04967 0.21 -0.1 411,767 - BACOVA_04967 0.21 -1.5 411,793 + BACOVA_04967 0.22 -0.6 411,846 - BACOVA_04967 0.23 -0.6 411,849 + BACOVA_04967 0.23 -0.6
Or see this region's nucleotide sequence