Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04947

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04946 and BACOVA_04947 overlap by 4 nucleotidesBACOVA_04947 and BACOVA_04948 overlap by 11 nucleotides BACOVA_04946: BACOVA_04946 - hypothetical protein, at 373,322 to 374,725 _04946 BACOVA_04947: BACOVA_04947 - hypothetical protein, at 374,722 to 375,285 _04947 BACOVA_04948: BACOVA_04948 - polygalacturonase (pectinase), at 375,275 to 376,810 _04948 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1at 373.736 kb on - strand, within BACOVA_04946at 373.763 kb on - strand, within BACOVA_04946at 373.763 kb on - strand, within BACOVA_04946at 373.765 kb on + strand, within BACOVA_04946at 373.775 kb on + strand, within BACOVA_04946at 373.775 kb on + strand, within BACOVA_04946at 373.841 kb on - strand, within BACOVA_04946at 373.859 kb on - strand, within BACOVA_04946at 373.989 kb on + strand, within BACOVA_04946at 374.040 kb on + strand, within BACOVA_04946at 374.040 kb on + strand, within BACOVA_04946at 374.040 kb on + strand, within BACOVA_04946at 374.054 kb on + strand, within BACOVA_04946at 374.054 kb on + strand, within BACOVA_04946at 374.098 kb on + strand, within BACOVA_04946at 374.098 kb on + strand, within BACOVA_04946at 374.102 kb on + strand, within BACOVA_04946at 374.103 kb on - strand, within BACOVA_04946at 374.103 kb on - strand, within BACOVA_04946at 374.103 kb on - strand, within BACOVA_04946at 374.147 kb on + strand, within BACOVA_04946at 374.148 kb on - strand, within BACOVA_04946at 374.223 kb on - strand, within BACOVA_04946at 374.264 kb on - strand, within BACOVA_04946at 374.320 kb on - strand, within BACOVA_04946at 374.320 kb on - strand, within BACOVA_04946at 374.325 kb on - strand, within BACOVA_04946at 374.410 kb on - strand, within BACOVA_04946at 374.413 kb on + strand, within BACOVA_04946at 374.414 kb on - strand, within BACOVA_04946at 374.414 kb on - strand, within BACOVA_04946at 374.414 kb on - strand, within BACOVA_04946at 374.414 kb on - strand, within BACOVA_04946at 374.442 kb on + strand, within BACOVA_04946at 374.443 kb on - strand, within BACOVA_04946at 374.476 kb on + strand, within BACOVA_04946at 374.496 kb on + strand, within BACOVA_04946at 374.501 kb on - strand, within BACOVA_04946at 374.510 kb on - strand, within BACOVA_04946at 374.539 kb on - strand, within BACOVA_04946at 374.556 kb on + strand, within BACOVA_04946at 374.557 kb on - strand, within BACOVA_04946at 374.558 kb on + strand, within BACOVA_04946at 374.558 kb on + strand, within BACOVA_04946at 374.559 kb on - strand, within BACOVA_04946at 374.559 kb on - strand, within BACOVA_04946at 374.654 kb on + strandat 374.655 kb on - strandat 374.704 kb on - strandat 374.705 kb on + strandat 374.760 kb on + strandat 374.760 kb on + strandat 374.760 kb on + strandat 374.761 kb on - strandat 374.761 kb on - strandat 374.766 kb on - strandat 374.772 kb on - strandat 374.796 kb on + strand, within BACOVA_04947at 374.807 kb on + strand, within BACOVA_04947at 374.808 kb on - strand, within BACOVA_04947at 374.931 kb on + strand, within BACOVA_04947at 374.931 kb on + strand, within BACOVA_04947at 374.931 kb on + strand, within BACOVA_04947at 374.931 kb on + strand, within BACOVA_04947at 374.932 kb on - strand, within BACOVA_04947at 374.932 kb on - strand, within BACOVA_04947at 374.932 kb on - strand, within BACOVA_04947at 374.986 kb on + strand, within BACOVA_04947at 375.009 kb on - strand, within BACOVA_04947at 375.009 kb on - strand, within BACOVA_04947at 375.040 kb on + strand, within BACOVA_04947at 375.085 kb on + strand, within BACOVA_04947at 375.086 kb on - strand, within BACOVA_04947at 375.119 kb on - strand, within BACOVA_04947at 375.190 kb on - strand, within BACOVA_04947at 375.223 kb on + strand, within BACOVA_04947at 375.319 kb on + strandat 375.319 kb on + strandat 375.320 kb on - strandat 375.324 kb on + strandat 375.324 kb on + strandat 375.325 kb on - strandat 375.338 kb on - strandat 375.340 kb on + strandat 375.341 kb on - strandat 375.421 kb on + strandat 375.422 kb on - strandat 375.465 kb on + strand, within BACOVA_04948at 375.465 kb on + strand, within BACOVA_04948at 375.489 kb on - strand, within BACOVA_04948at 375.552 kb on - strand, within BACOVA_04948at 375.555 kb on + strand, within BACOVA_04948at 375.555 kb on + strand, within BACOVA_04948at 375.556 kb on - strand, within BACOVA_04948at 375.741 kb on + strand, within BACOVA_04948at 375.741 kb on + strand, within BACOVA_04948at 375.822 kb on + strand, within BACOVA_04948at 375.823 kb on - strand, within BACOVA_04948at 375.831 kb on - strand, within BACOVA_04948at 375.840 kb on - strand, within BACOVA_04948at 375.905 kb on + strand, within BACOVA_04948at 375.905 kb on + strand, within BACOVA_04948at 375.905 kb on + strand, within BACOVA_04948at 375.973 kb on + strand, within BACOVA_04948at 375.973 kb on + strand, within BACOVA_04948at 375.974 kb on - strand, within BACOVA_04948at 375.985 kb on + strand, within BACOVA_04948at 375.992 kb on + strand, within BACOVA_04948at 375.993 kb on - strand, within BACOVA_04948at 376.015 kb on + strand, within BACOVA_04948at 376.067 kb on + strand, within BACOVA_04948at 376.067 kb on + strand, within BACOVA_04948at 376.067 kb on + strand, within BACOVA_04948at 376.068 kb on - strand, within BACOVA_04948at 376.070 kb on - strand, within BACOVA_04948at 376.070 kb on - strand, within BACOVA_04948at 376.094 kb on + strand, within BACOVA_04948at 376.095 kb on - strand, within BACOVA_04948at 376.219 kb on - strand, within BACOVA_04948

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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373,736 - BACOVA_04946 0.29 +0.4
373,763 - BACOVA_04946 0.31 +0.7
373,763 - BACOVA_04946 0.31 -1.2
373,765 + BACOVA_04946 0.32 -0.9
373,775 + BACOVA_04946 0.32 +0.3
373,775 + BACOVA_04946 0.32 +0.6
373,841 - BACOVA_04946 0.37 -0.7
373,859 - BACOVA_04946 0.38 -1.5
373,989 + BACOVA_04946 0.48 +0.6
374,040 + BACOVA_04946 0.51 -0.9
374,040 + BACOVA_04946 0.51 -1.9
374,040 + BACOVA_04946 0.51 -0.3
374,054 + BACOVA_04946 0.52 -0.4
374,054 + BACOVA_04946 0.52 +0.8
374,098 + BACOVA_04946 0.55 -1.1
374,098 + BACOVA_04946 0.55 -0.3
374,102 + BACOVA_04946 0.56 -0.3
374,103 - BACOVA_04946 0.56 +0.1
374,103 - BACOVA_04946 0.56 -0.7
374,103 - BACOVA_04946 0.56 -0.4
374,147 + BACOVA_04946 0.59 +0.4
374,148 - BACOVA_04946 0.59 -0.0
374,223 - BACOVA_04946 0.64 -0.1
374,264 - BACOVA_04946 0.67 +0.7
374,320 - BACOVA_04946 0.71 -0.5
374,320 - BACOVA_04946 0.71 -0.2
374,325 - BACOVA_04946 0.71 -0.8
374,410 - BACOVA_04946 0.77 -0.6
374,413 + BACOVA_04946 0.78 -1.2
374,414 - BACOVA_04946 0.78 -1.1
374,414 - BACOVA_04946 0.78 -0.1
374,414 - BACOVA_04946 0.78 +0.8
374,414 - BACOVA_04946 0.78 -0.1
374,442 + BACOVA_04946 0.80 -0.2
374,443 - BACOVA_04946 0.80 -0.7
374,476 + BACOVA_04946 0.82 +1.0
374,496 + BACOVA_04946 0.84 -1.0
374,501 - BACOVA_04946 0.84 -1.3
374,510 - BACOVA_04946 0.85 +0.6
374,539 - BACOVA_04946 0.87 +0.0
374,556 + BACOVA_04946 0.88 +0.4
374,557 - BACOVA_04946 0.88 +0.2
374,558 + BACOVA_04946 0.88 +0.0
374,558 + BACOVA_04946 0.88 -0.5
374,559 - BACOVA_04946 0.88 +0.3
374,559 - BACOVA_04946 0.88 +0.8
374,654 + -1.4
374,655 - +0.8
374,704 - +0.6
374,705 + -1.3
374,760 + -0.6
374,760 + -0.2
374,760 + -0.5
374,761 - -0.1
374,761 - -0.6
374,766 - -1.6
374,772 - -0.3
374,796 + BACOVA_04947 0.13 +0.1
374,807 + BACOVA_04947 0.15 -1.5
374,808 - BACOVA_04947 0.15 +0.4
374,931 + BACOVA_04947 0.37 +0.2
374,931 + BACOVA_04947 0.37 +0.2
374,931 + BACOVA_04947 0.37 -0.9
374,931 + BACOVA_04947 0.37 -2.0
374,932 - BACOVA_04947 0.37 -1.5
374,932 - BACOVA_04947 0.37 -0.2
374,932 - BACOVA_04947 0.37 +0.3
374,986 + BACOVA_04947 0.47 +0.3
375,009 - BACOVA_04947 0.51 +0.0
375,009 - BACOVA_04947 0.51 -1.8
375,040 + BACOVA_04947 0.56 +0.0
375,085 + BACOVA_04947 0.64 -0.3
375,086 - BACOVA_04947 0.65 +0.1
375,119 - BACOVA_04947 0.70 +0.1
375,190 - BACOVA_04947 0.83 -2.3
375,223 + BACOVA_04947 0.89 -1.7
375,319 + -1.0
375,319 + +0.5
375,320 - -0.7
375,324 + -1.8
375,324 + -0.3
375,325 - -0.0
375,338 - +0.1
375,340 + +0.5
375,341 - +0.5
375,421 + -0.2
375,422 - -0.9
375,465 + BACOVA_04948 0.12 -0.8
375,465 + BACOVA_04948 0.12 -1.3
375,489 - BACOVA_04948 0.14 -0.3
375,552 - BACOVA_04948 0.18 +0.0
375,555 + BACOVA_04948 0.18 -0.6
375,555 + BACOVA_04948 0.18 -0.3
375,556 - BACOVA_04948 0.18 -0.1
375,741 + BACOVA_04948 0.30 +1.2
375,741 + BACOVA_04948 0.30 -0.6
375,822 + BACOVA_04948 0.36 +0.3
375,823 - BACOVA_04948 0.36 -0.3
375,831 - BACOVA_04948 0.36 +0.4
375,840 - BACOVA_04948 0.37 -0.6
375,905 + BACOVA_04948 0.41 +0.8
375,905 + BACOVA_04948 0.41 +0.7
375,905 + BACOVA_04948 0.41 -0.2
375,973 + BACOVA_04948 0.45 -2.3
375,973 + BACOVA_04948 0.45 -1.8
375,974 - BACOVA_04948 0.46 +0.4
375,985 + BACOVA_04948 0.46 +0.2
375,992 + BACOVA_04948 0.47 -0.1
375,993 - BACOVA_04948 0.47 +0.1
376,015 + BACOVA_04948 0.48 +0.4
376,067 + BACOVA_04948 0.52 +1.0
376,067 + BACOVA_04948 0.52 +1.3
376,067 + BACOVA_04948 0.52 +0.4
376,068 - BACOVA_04948 0.52 +0.2
376,070 - BACOVA_04948 0.52 +1.3
376,070 - BACOVA_04948 0.52 -0.0
376,094 + BACOVA_04948 0.53 -0.0
376,095 - BACOVA_04948 0.53 -0.7
376,219 - BACOVA_04948 0.61 +0.4

Or see this region's nucleotide sequence