Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02848 and BACOVA_02849 are separated by 9 nucleotides BACOVA_02849 and BACOVA_02850 are separated by 17 nucleotides BACOVA_02850 and BACOVA_02851 are separated by 15 nucleotides
BACOVA_02848: BACOVA_02848 - hypothetical protein, at 329,149 to 330,672
_02848
BACOVA_02849: BACOVA_02849 - hypothetical protein, at 330,682 to 331,365
_02849
BACOVA_02850: BACOVA_02850 - hypothetical protein, at 331,383 to 333,050
_02850
BACOVA_02851: BACOVA_02851 - hypothetical protein, at 333,066 to 335,414
_02851
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 330.387 kb on + strand, within BACOVA_02848 at 330.409 kb on - strand, within BACOVA_02848 at 330.416 kb on - strand, within BACOVA_02848 at 330.416 kb on - strand, within BACOVA_02848 at 330.417 kb on + strand, within BACOVA_02848 at 330.428 kb on + strand, within BACOVA_02848 at 330.456 kb on + strand, within BACOVA_02848 at 330.456 kb on + strand, within BACOVA_02848 at 330.516 kb on + strand, within BACOVA_02848 at 330.568 kb on - strand at 330.572 kb on - strand at 330.572 kb on - strand at 330.580 kb on + strand at 330.581 kb on - strand at 330.581 kb on - strand at 330.583 kb on + strand at 330.648 kb on + strand at 330.649 kb on - strand at 330.682 kb on - strand at 330.682 kb on - strand at 330.691 kb on - strand at 330.694 kb on - strand at 330.696 kb on - strand at 330.696 kb on - strand at 330.696 kb on - strand at 330.707 kb on + strand at 330.708 kb on - strand at 330.712 kb on - strand at 330.730 kb on + strand at 330.731 kb on - strand at 330.756 kb on - strand, within BACOVA_02849 at 330.756 kb on - strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.761 kb on + strand, within BACOVA_02849 at 330.764 kb on - strand, within BACOVA_02849 at 330.791 kb on - strand, within BACOVA_02849 at 330.791 kb on - strand, within BACOVA_02849 at 330.795 kb on + strand, within BACOVA_02849 at 330.796 kb on - strand, within BACOVA_02849 at 330.833 kb on - strand, within BACOVA_02849 at 330.851 kb on - strand, within BACOVA_02849 at 330.878 kb on + strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.879 kb on - strand, within BACOVA_02849 at 330.959 kb on + strand, within BACOVA_02849 at 330.960 kb on - strand, within BACOVA_02849 at 330.960 kb on - strand, within BACOVA_02849 at 330.976 kb on + strand, within BACOVA_02849 at 330.977 kb on - strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.978 kb on + strand, within BACOVA_02849 at 330.979 kb on - strand, within BACOVA_02849 at 330.982 kb on + strand, within BACOVA_02849 at 330.983 kb on - strand, within BACOVA_02849 at 330.983 kb on - strand, within BACOVA_02849 at 330.985 kb on - strand, within BACOVA_02849 at 330.985 kb on - strand, within BACOVA_02849 at 331.010 kb on + strand, within BACOVA_02849 at 331.015 kb on + strand, within BACOVA_02849 at 331.026 kb on - strand, within BACOVA_02849 at 331.050 kb on + strand, within BACOVA_02849 at 331.090 kb on - strand, within BACOVA_02849 at 331.183 kb on + strand, within BACOVA_02849 at 331.212 kb on + strand, within BACOVA_02849 at 331.212 kb on + strand, within BACOVA_02849 at 331.216 kb on + strand, within BACOVA_02849 at 331.216 kb on + strand, within BACOVA_02849 at 331.217 kb on - strand, within BACOVA_02849 at 331.217 kb on - strand, within BACOVA_02849 at 331.225 kb on - strand, within BACOVA_02849 at 331.227 kb on + strand, within BACOVA_02849 at 331.248 kb on - strand, within BACOVA_02849 at 331.272 kb on + strand, within BACOVA_02849 at 331.272 kb on + strand, within BACOVA_02849 at 331.280 kb on + strand, within BACOVA_02849 at 331.305 kb on + strand at 331.306 kb on - strand at 331.357 kb on + strand at 331.358 kb on - strand at 331.363 kb on + strand at 331.370 kb on - strand at 331.393 kb on - strand at 331.393 kb on - strand at 331.393 kb on - strand at 331.395 kb on - strand at 331.403 kb on + strand at 331.404 kb on - strand at 331.406 kb on - strand at 331.408 kb on + strand at 331.465 kb on - strand at 331.465 kb on - strand at 331.470 kb on + strand at 331.481 kb on - strand at 331.484 kb on + strand at 331.498 kb on + strand at 331.499 kb on - strand at 331.499 kb on - strand at 331.516 kb on + strand at 331.516 kb on + strand at 331.516 kb on + strand at 331.517 kb on - strand at 331.517 kb on - strand at 331.517 kb on - strand at 331.521 kb on - strand at 331.653 kb on - strand, within BACOVA_02850 at 331.662 kb on - strand, within BACOVA_02850 at 331.688 kb on + strand, within BACOVA_02850 at 331.694 kb on - strand, within BACOVA_02850 at 331.721 kb on + strand, within BACOVA_02850 at 331.730 kb on - strand, within BACOVA_02850 at 331.730 kb on - strand, within BACOVA_02850 at 331.794 kb on - strand, within BACOVA_02850 at 331.805 kb on - strand, within BACOVA_02850 at 331.852 kb on + strand, within BACOVA_02850 at 331.884 kb on + strand, within BACOVA_02850 at 331.991 kb on + strand, within BACOVA_02850 at 331.994 kb on + strand, within BACOVA_02850 at 331.995 kb on - strand, within BACOVA_02850 at 331.995 kb on - strand, within BACOVA_02850 at 332.016 kb on - strand, within BACOVA_02850 at 332.021 kb on - strand, within BACOVA_02850 at 332.080 kb on + strand, within BACOVA_02850 at 332.091 kb on + strand, within BACOVA_02850 at 332.092 kb on - strand, within BACOVA_02850 at 332.145 kb on - strand, within BACOVA_02850 at 332.156 kb on - strand, within BACOVA_02850 at 332.171 kb on - strand, within BACOVA_02850 at 332.190 kb on - strand, within BACOVA_02850 at 332.203 kb on - strand, within BACOVA_02850 at 332.214 kb on - strand, within BACOVA_02850 at 332.230 kb on + strand, within BACOVA_02850 at 332.343 kb on - strand, within BACOVA_02850 at 332.361 kb on + strand, within BACOVA_02850 at 332.362 kb on - strand, within BACOVA_02850 at 332.393 kb on + strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.394 kb on - strand, within BACOVA_02850 at 332.397 kb on + strand, within BACOVA_02850 at 332.398 kb on - strand, within BACOVA_02850 at 332.402 kb on + strand, within BACOVA_02850 at 332.406 kb on - strand, within BACOVA_02850 at 332.439 kb on + strand, within BACOVA_02850 at 332.492 kb on - strand, within BACOVA_02850 at 332.505 kb on - strand, within BACOVA_02850 at 332.609 kb on + strand, within BACOVA_02850 at 332.609 kb on + strand, within BACOVA_02850 at 332.625 kb on + strand, within BACOVA_02850 at 332.639 kb on - strand, within BACOVA_02850 at 332.657 kb on - strand, within BACOVA_02850 at 332.689 kb on - strand, within BACOVA_02850 at 332.703 kb on - strand, within BACOVA_02850 at 332.704 kb on + strand, within BACOVA_02850 at 332.705 kb on - strand, within BACOVA_02850 at 332.723 kb on + strand, within BACOVA_02850 at 332.729 kb on - strand, within BACOVA_02850 at 332.729 kb on - strand, within BACOVA_02850 at 332.731 kb on - strand, within BACOVA_02850 at 332.731 kb on - strand, within BACOVA_02850 at 332.772 kb on - strand, within BACOVA_02850 at 332.775 kb on + strand, within BACOVA_02850 at 332.810 kb on - strand, within BACOVA_02850 at 332.869 kb on - strand, within BACOVA_02850 at 332.871 kb on - strand, within BACOVA_02850 at 332.881 kb on + strand, within BACOVA_02850 at 332.882 kb on - strand, within BACOVA_02850 at 332.909 kb on + strand at 332.910 kb on - strand at 332.926 kb on + strand at 332.962 kb on + strand at 332.992 kb on - strand at 333.032 kb on + strand at 333.033 kb on - strand at 333.039 kb on - strand at 333.042 kb on + strand at 333.048 kb on + strand at 333.051 kb on + strand at 333.052 kb on - strand at 333.052 kb on - strand at 333.053 kb on + strand at 333.054 kb on - strand at 333.070 kb on + strand at 333.071 kb on - strand at 333.092 kb on - strand at 333.140 kb on + strand at 333.192 kb on - strand at 333.192 kb on - strand at 333.192 kb on - strand at 333.195 kb on - strand at 333.215 kb on + strand at 333.215 kb on + strand at 333.215 kb on + strand at 333.216 kb on - strand at 333.216 kb on - strand at 333.220 kb on - strand at 333.263 kb on - strand at 333.273 kb on - strand at 333.305 kb on + strand, within BACOVA_02851 at 333.341 kb on - strand, within BACOVA_02851 at 333.341 kb on - strand, within BACOVA_02851 at 333.349 kb on + strand, within BACOVA_02851 at 333.476 kb on + strand, within BACOVA_02851 at 333.491 kb on + strand, within BACOVA_02851 at 333.498 kb on - strand, within BACOVA_02851 at 333.521 kb on - strand, within BACOVA_02851 at 333.566 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.571 kb on + strand, within BACOVA_02851 at 333.616 kb on - strand, within BACOVA_02851 at 333.617 kb on + strand, within BACOVA_02851 at 333.618 kb on - strand, within BACOVA_02851 at 333.656 kb on - strand, within BACOVA_02851 at 333.656 kb on - strand, within BACOVA_02851 at 333.694 kb on + strand, within BACOVA_02851 at 333.702 kb on - strand, within BACOVA_02851 at 333.720 kb on + strand, within BACOVA_02851 at 333.723 kb on - strand, within BACOVA_02851 at 333.743 kb on + strand, within BACOVA_02851 at 333.743 kb on + strand, within BACOVA_02851 at 333.751 kb on + strand, within BACOVA_02851 at 333.794 kb on + strand, within BACOVA_02851 at 333.909 kb on + strand, within BACOVA_02851 at 333.910 kb on - strand, within BACOVA_02851 at 333.937 kb on + strand, within BACOVA_02851 at 333.938 kb on - strand, within BACOVA_02851 at 333.944 kb on + strand, within BACOVA_02851 at 333.944 kb on + strand, within BACOVA_02851 at 333.945 kb on - strand, within BACOVA_02851 at 333.954 kb on + strand, within BACOVA_02851 at 333.959 kb on - strand, within BACOVA_02851 at 333.959 kb on - strand, within BACOVA_02851 at 333.965 kb on + strand, within BACOVA_02851 at 333.982 kb on - strand, within BACOVA_02851 at 333.982 kb on - strand, within BACOVA_02851
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 330,387 + BACOVA_02848 0.81 +0.3 330,409 - BACOVA_02848 0.83 +0.0 330,416 - BACOVA_02848 0.83 -1.2 330,416 - BACOVA_02848 0.83 +0.2 330,417 + BACOVA_02848 0.83 -0.3 330,428 + BACOVA_02848 0.84 +1.3 330,456 + BACOVA_02848 0.86 -0.0 330,456 + BACOVA_02848 0.86 -1.1 330,516 + BACOVA_02848 0.90 +0.7 330,568 - +0.1 330,572 - -1.4 330,572 - +0.5 330,580 + -0.9 330,581 - +2.8 330,581 - -0.0 330,583 + +0.5 330,648 + -0.9 330,649 - -0.0 330,682 - -0.4 330,682 - +2.1 330,691 - -2.1 330,694 - +0.2 330,696 - -0.4 330,696 - +1.1 330,696 - +0.5 330,707 + +1.3 330,708 - +1.1 330,712 - +0.3 330,730 + -0.5 330,731 - +0.1 330,756 - BACOVA_02849 0.11 -0.0 330,756 - BACOVA_02849 0.11 +0.7 330,761 + BACOVA_02849 0.12 +0.7 330,761 + BACOVA_02849 0.12 -0.5 330,761 + BACOVA_02849 0.12 -0.2 330,761 + BACOVA_02849 0.12 -0.8 330,764 - BACOVA_02849 0.12 +0.3 330,791 - BACOVA_02849 0.16 -1.6 330,791 - BACOVA_02849 0.16 +0.4 330,795 + BACOVA_02849 0.17 -1.5 330,796 - BACOVA_02849 0.17 -1.9 330,833 - BACOVA_02849 0.22 +0.7 330,851 - BACOVA_02849 0.25 -0.1 330,878 + BACOVA_02849 0.29 +0.5 330,879 - BACOVA_02849 0.29 +1.3 330,879 - BACOVA_02849 0.29 +0.3 330,879 - BACOVA_02849 0.29 -0.3 330,959 + BACOVA_02849 0.40 -0.6 330,960 - BACOVA_02849 0.41 -0.9 330,960 - BACOVA_02849 0.41 -1.3 330,976 + BACOVA_02849 0.43 -1.2 330,977 - BACOVA_02849 0.43 +0.4 330,978 + BACOVA_02849 0.43 +1.3 330,978 + BACOVA_02849 0.43 -1.0 330,978 + BACOVA_02849 0.43 +0.5 330,979 - BACOVA_02849 0.43 -0.5 330,982 + BACOVA_02849 0.44 -0.2 330,983 - BACOVA_02849 0.44 -1.0 330,983 - BACOVA_02849 0.44 +0.0 330,985 - BACOVA_02849 0.44 -0.4 330,985 - BACOVA_02849 0.44 +0.7 331,010 + BACOVA_02849 0.48 -0.9 331,015 + BACOVA_02849 0.49 +0.5 331,026 - BACOVA_02849 0.50 -0.1 331,050 + BACOVA_02849 0.54 +0.1 331,090 - BACOVA_02849 0.60 +1.1 331,183 + BACOVA_02849 0.73 -0.0 331,212 + BACOVA_02849 0.77 -0.8 331,212 + BACOVA_02849 0.77 -0.3 331,216 + BACOVA_02849 0.78 -2.1 331,216 + BACOVA_02849 0.78 -0.3 331,217 - BACOVA_02849 0.78 -1.0 331,217 - BACOVA_02849 0.78 -0.5 331,225 - BACOVA_02849 0.79 -1.1 331,227 + BACOVA_02849 0.80 +0.4 331,248 - BACOVA_02849 0.83 +0.5 331,272 + BACOVA_02849 0.86 +0.1 331,272 + BACOVA_02849 0.86 -1.6 331,280 + BACOVA_02849 0.87 +0.1 331,305 + -1.6 331,306 - +0.8 331,357 + +0.5 331,358 - +0.5 331,363 + +0.3 331,370 - -0.0 331,393 - +0.3 331,393 - -0.1 331,393 - -0.1 331,395 - +0.4 331,403 + -0.9 331,404 - -0.2 331,406 - +0.2 331,408 + +0.3 331,465 - -0.4 331,465 - -0.4 331,470 + -0.2 331,481 - +0.2 331,484 + +0.0 331,498 + +1.2 331,499 - -1.3 331,499 - +0.4 331,516 + +0.4 331,516 + -1.0 331,516 + -0.4 331,517 - -0.3 331,517 - +0.2 331,517 - +0.4 331,521 - -1.4 331,653 - BACOVA_02850 0.16 +1.3 331,662 - BACOVA_02850 0.17 +0.1 331,688 + BACOVA_02850 0.18 +0.6 331,694 - BACOVA_02850 0.19 +0.3 331,721 + BACOVA_02850 0.20 +0.7 331,730 - BACOVA_02850 0.21 +0.1 331,730 - BACOVA_02850 0.21 -0.6 331,794 - BACOVA_02850 0.25 +0.9 331,805 - BACOVA_02850 0.25 -0.2 331,852 + BACOVA_02850 0.28 +0.0 331,884 + BACOVA_02850 0.30 -1.4 331,991 + BACOVA_02850 0.36 +0.8 331,994 + BACOVA_02850 0.37 +0.5 331,995 - BACOVA_02850 0.37 +0.5 331,995 - BACOVA_02850 0.37 -0.2 332,016 - BACOVA_02850 0.38 +1.1 332,021 - BACOVA_02850 0.38 +1.7 332,080 + BACOVA_02850 0.42 -0.9 332,091 + BACOVA_02850 0.42 -0.8 332,092 - BACOVA_02850 0.43 -0.5 332,145 - BACOVA_02850 0.46 +0.2 332,156 - BACOVA_02850 0.46 -0.1 332,171 - BACOVA_02850 0.47 -0.3 332,190 - BACOVA_02850 0.48 -1.6 332,203 - BACOVA_02850 0.49 -0.1 332,214 - BACOVA_02850 0.50 +0.2 332,230 + BACOVA_02850 0.51 +1.1 332,343 - BACOVA_02850 0.58 +0.6 332,361 + BACOVA_02850 0.59 +0.5 332,362 - BACOVA_02850 0.59 -1.3 332,393 + BACOVA_02850 0.61 -0.3 332,394 - BACOVA_02850 0.61 +1.5 332,394 - BACOVA_02850 0.61 +0.9 332,394 - BACOVA_02850 0.61 -0.6 332,397 + BACOVA_02850 0.61 -1.0 332,398 - BACOVA_02850 0.61 -0.4 332,402 + BACOVA_02850 0.61 +0.0 332,406 - BACOVA_02850 0.61 -0.2 332,439 + BACOVA_02850 0.63 +1.7 332,492 - BACOVA_02850 0.66 -0.5 332,505 - BACOVA_02850 0.67 -0.7 332,609 + BACOVA_02850 0.74 -0.3 332,609 + BACOVA_02850 0.74 +1.7 332,625 + BACOVA_02850 0.74 -1.0 332,639 - BACOVA_02850 0.75 +1.0 332,657 - BACOVA_02850 0.76 -0.4 332,689 - BACOVA_02850 0.78 -0.5 332,703 - BACOVA_02850 0.79 +0.2 332,704 + BACOVA_02850 0.79 +0.9 332,705 - BACOVA_02850 0.79 -0.2 332,723 + BACOVA_02850 0.80 +1.6 332,729 - BACOVA_02850 0.81 -0.1 332,729 - BACOVA_02850 0.81 +0.3 332,731 - BACOVA_02850 0.81 +0.3 332,731 - BACOVA_02850 0.81 -1.3 332,772 - BACOVA_02850 0.83 +0.1 332,775 + BACOVA_02850 0.83 -0.4 332,810 - BACOVA_02850 0.86 -0.4 332,869 - BACOVA_02850 0.89 -0.3 332,871 - BACOVA_02850 0.89 +0.4 332,881 + BACOVA_02850 0.90 -0.0 332,882 - BACOVA_02850 0.90 +0.9 332,909 + +1.8 332,910 - -0.0 332,926 + +0.8 332,962 + +0.2 332,992 - +0.1 333,032 + -0.9 333,033 - +0.7 333,039 - -0.4 333,042 + -0.3 333,048 + +0.2 333,051 + -1.3 333,052 - -0.2 333,052 - -0.5 333,053 + +0.1 333,054 - -0.7 333,070 + +0.7 333,071 - +0.9 333,092 - -2.0 333,140 + -1.7 333,192 - +0.4 333,192 - +0.3 333,192 - -0.1 333,195 - -0.3 333,215 + -0.0 333,215 + +0.1 333,215 + +0.8 333,216 - +1.0 333,216 - -0.5 333,220 - +0.2 333,263 - -0.3 333,273 - -0.6 333,305 + BACOVA_02851 0.10 +0.6 333,341 - BACOVA_02851 0.12 -0.3 333,341 - BACOVA_02851 0.12 +1.2 333,349 + BACOVA_02851 0.12 +0.5 333,476 + BACOVA_02851 0.17 -0.1 333,491 + BACOVA_02851 0.18 -1.1 333,498 - BACOVA_02851 0.18 -0.0 333,521 - BACOVA_02851 0.19 +1.9 333,566 + BACOVA_02851 0.21 -0.3 333,571 + BACOVA_02851 0.21 -0.5 333,571 + BACOVA_02851 0.21 +0.3 333,571 + BACOVA_02851 0.21 +0.3 333,616 - BACOVA_02851 0.23 -0.9 333,617 + BACOVA_02851 0.23 -1.3 333,618 - BACOVA_02851 0.23 +0.4 333,656 - BACOVA_02851 0.25 +0.2 333,656 - BACOVA_02851 0.25 -0.1 333,694 + BACOVA_02851 0.27 +0.0 333,702 - BACOVA_02851 0.27 -0.1 333,720 + BACOVA_02851 0.28 +0.2 333,723 - BACOVA_02851 0.28 +0.5 333,743 + BACOVA_02851 0.29 +1.3 333,743 + BACOVA_02851 0.29 -0.1 333,751 + BACOVA_02851 0.29 -1.1 333,794 + BACOVA_02851 0.31 +0.4 333,909 + BACOVA_02851 0.36 +1.3 333,910 - BACOVA_02851 0.36 -1.2 333,937 + BACOVA_02851 0.37 -1.1 333,938 - BACOVA_02851 0.37 +0.7 333,944 + BACOVA_02851 0.37 -0.9 333,944 + BACOVA_02851 0.37 -0.2 333,945 - BACOVA_02851 0.37 -0.6 333,954 + BACOVA_02851 0.38 -0.4 333,959 - BACOVA_02851 0.38 -0.2 333,959 - BACOVA_02851 0.38 -1.1 333,965 + BACOVA_02851 0.38 -1.2 333,982 - BACOVA_02851 0.39 -0.6 333,982 - BACOVA_02851 0.39 +0.3
Or see this region's nucleotide sequence