Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02430

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02429 and BACOVA_02430 are separated by 272 nucleotidesBACOVA_02430 and BACOVA_02431 are separated by 220 nucleotidesBACOVA_02431 and BACOVA_02432 are separated by 57 nucleotides BACOVA_02429: BACOVA_02429 - hypothetical protein, at 193,783 to 194,952 _02429 BACOVA_02430: BACOVA_02430 - hypothetical protein, at 195,225 to 196,508 _02430 BACOVA_02431: BACOVA_02431 - hypothetical protein, at 196,729 to 196,836 _02431 BACOVA_02432: BACOVA_02432 - transcriptional regulator, AraC family, at 196,894 to 197,793 _02432 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 194.242 kb on - strand, within BACOVA_02429at 194.332 kb on + strand, within BACOVA_02429at 194.333 kb on - strand, within BACOVA_02429at 194.337 kb on + strand, within BACOVA_02429at 194.338 kb on - strand, within BACOVA_02429at 194.350 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.447 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.550 kb on + strand, within BACOVA_02429at 194.563 kb on + strand, within BACOVA_02429at 194.564 kb on - strand, within BACOVA_02429at 194.630 kb on - strand, within BACOVA_02429at 194.646 kb on + strand, within BACOVA_02429at 194.646 kb on + strand, within BACOVA_02429at 194.662 kb on - strand, within BACOVA_02429at 194.667 kb on + strand, within BACOVA_02429at 194.677 kb on + strand, within BACOVA_02429at 194.677 kb on + strand, within BACOVA_02429at 194.678 kb on - strand, within BACOVA_02429at 194.678 kb on - strand, within BACOVA_02429at 194.863 kb on + strandat 194.863 kb on + strandat 194.864 kb on - strandat 194.871 kb on + strandat 194.872 kb on - strandat 194.944 kb on - strandat 194.950 kb on + strandat 194.967 kb on + strandat 194.975 kb on + strandat 194.975 kb on + strandat 194.979 kb on + strandat 194.979 kb on + strandat 194.993 kb on - strandat 195.039 kb on + strandat 195.129 kb on - strandat 195.207 kb on - strandat 195.207 kb on - strandat 195.215 kb on + strandat 195.216 kb on - strandat 195.239 kb on + strandat 195.239 kb on + strandat 195.241 kb on + strandat 195.241 kb on + strandat 195.315 kb on - strandat 195.338 kb on - strandat 195.338 kb on - strandat 195.340 kb on + strandat 195.340 kb on + strandat 195.359 kb on + strand, within BACOVA_02430at 195.445 kb on - strand, within BACOVA_02430at 195.458 kb on - strand, within BACOVA_02430at 195.477 kb on + strand, within BACOVA_02430at 195.477 kb on + strand, within BACOVA_02430at 195.478 kb on - strand, within BACOVA_02430at 195.482 kb on + strand, within BACOVA_02430at 195.488 kb on + strand, within BACOVA_02430at 195.489 kb on - strand, within BACOVA_02430at 195.489 kb on - strand, within BACOVA_02430at 195.536 kb on + strand, within BACOVA_02430at 195.550 kb on - strand, within BACOVA_02430at 195.673 kb on - strand, within BACOVA_02430at 195.675 kb on - strand, within BACOVA_02430at 195.684 kb on + strand, within BACOVA_02430at 195.685 kb on - strand, within BACOVA_02430at 195.697 kb on - strand, within BACOVA_02430at 195.719 kb on - strand, within BACOVA_02430at 195.726 kb on + strand, within BACOVA_02430at 195.737 kb on + strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.744 kb on + strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.819 kb on - strand, within BACOVA_02430at 195.831 kb on + strand, within BACOVA_02430at 196.051 kb on - strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.090 kb on + strand, within BACOVA_02430at 196.091 kb on - strand, within BACOVA_02430at 196.094 kb on + strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.132 kb on - strand, within BACOVA_02430at 196.187 kb on + strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.224 kb on - strand, within BACOVA_02430at 196.296 kb on + strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.300 kb on + strand, within BACOVA_02430at 196.301 kb on - strand, within BACOVA_02430at 196.394 kb on + strandat 196.394 kb on + strandat 196.395 kb on - strandat 196.459 kb on - strandat 196.489 kb on + strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.509 kb on + strandat 196.510 kb on - strandat 196.536 kb on + strandat 196.539 kb on - strandat 196.543 kb on - strandat 196.637 kb on + strandat 196.638 kb on - strandat 196.670 kb on - strandat 196.670 kb on - strandat 196.730 kb on + strandat 196.874 kb on - strandat 196.890 kb on - strandat 196.904 kb on - strandat 197.013 kb on + strand, within BACOVA_02432at 197.014 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.145 kb on + strand, within BACOVA_02432at 197.146 kb on - strand, within BACOVA_02432at 197.155 kb on + strand, within BACOVA_02432at 197.158 kb on - strand, within BACOVA_02432at 197.221 kb on - strand, within BACOVA_02432at 197.229 kb on + strand, within BACOVA_02432at 197.241 kb on + strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.297 kb on - strand, within BACOVA_02432at 197.301 kb on - strand, within BACOVA_02432at 197.311 kb on + strand, within BACOVA_02432at 197.323 kb on - strand, within BACOVA_02432at 197.362 kb on - strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.408 kb on - strand, within BACOVA_02432at 197.426 kb on + strand, within BACOVA_02432at 197.439 kb on + strand, within BACOVA_02432at 197.440 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.445 kb on + strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.455 kb on - strand, within BACOVA_02432at 197.501 kb on - strand, within BACOVA_02432at 197.503 kb on - strand, within BACOVA_02432

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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194,242 - BACOVA_02429 0.39 +1.4
194,332 + BACOVA_02429 0.47 -1.8
194,333 - BACOVA_02429 0.47 -2.3
194,337 + BACOVA_02429 0.47 +0.6
194,338 - BACOVA_02429 0.47 +0.2
194,350 + BACOVA_02429 0.48 +1.2
194,395 + BACOVA_02429 0.52 +0.4
194,395 + BACOVA_02429 0.52 -0.4
194,396 - BACOVA_02429 0.52 +0.3
194,396 - BACOVA_02429 0.52 +0.4
194,396 - BACOVA_02429 0.52 +0.3
194,447 - BACOVA_02429 0.57 +0.0
194,494 - BACOVA_02429 0.61 -0.7
194,494 - BACOVA_02429 0.61 +0.6
194,541 + BACOVA_02429 0.65 +1.2
194,541 + BACOVA_02429 0.65 -1.1
194,550 + BACOVA_02429 0.66 +0.3
194,563 + BACOVA_02429 0.67 +0.3
194,564 - BACOVA_02429 0.67 +0.1
194,630 - BACOVA_02429 0.72 +0.1
194,646 + BACOVA_02429 0.74 +0.0
194,646 + BACOVA_02429 0.74 +1.7
194,662 - BACOVA_02429 0.75 -0.7
194,667 + BACOVA_02429 0.76 +0.2
194,677 + BACOVA_02429 0.76 +0.3
194,677 + BACOVA_02429 0.76 -1.4
194,678 - BACOVA_02429 0.76 -0.3
194,678 - BACOVA_02429 0.76 +1.6
194,863 + +0.3
194,863 + -2.7
194,864 - -0.2
194,871 + -0.6
194,872 - -0.3
194,944 - +0.7
194,950 + -0.1
194,967 + +0.5
194,975 + +0.5
194,975 + +0.8
194,979 + +1.3
194,979 + +1.1
194,993 - +0.0
195,039 + -1.7
195,129 - +0.5
195,207 - +0.6
195,207 - -0.1
195,215 + +0.6
195,216 - +0.1
195,239 + -0.4
195,239 + +1.8
195,241 + -0.2
195,241 + +0.1
195,315 - +0.8
195,338 - -1.0
195,338 - +0.5
195,340 + -0.4
195,340 + -0.4
195,359 + BACOVA_02430 0.10 -0.6
195,445 - BACOVA_02430 0.17 +0.7
195,458 - BACOVA_02430 0.18 +0.9
195,477 + BACOVA_02430 0.20 +0.2
195,477 + BACOVA_02430 0.20 +0.3
195,478 - BACOVA_02430 0.20 -0.4
195,482 + BACOVA_02430 0.20 -0.9
195,488 + BACOVA_02430 0.20 -0.9
195,489 - BACOVA_02430 0.21 -0.7
195,489 - BACOVA_02430 0.21 +1.1
195,536 + BACOVA_02430 0.24 +1.1
195,550 - BACOVA_02430 0.25 +0.6
195,673 - BACOVA_02430 0.35 +0.6
195,675 - BACOVA_02430 0.35 +0.9
195,684 + BACOVA_02430 0.36 -1.1
195,685 - BACOVA_02430 0.36 -0.1
195,697 - BACOVA_02430 0.37 +1.3
195,719 - BACOVA_02430 0.38 -0.2
195,726 + BACOVA_02430 0.39 -1.3
195,737 + BACOVA_02430 0.40 +0.8
195,738 - BACOVA_02430 0.40 +0.4
195,738 - BACOVA_02430 0.40 -1.3
195,744 + BACOVA_02430 0.40 +0.8
195,745 - BACOVA_02430 0.40 -1.6
195,745 - BACOVA_02430 0.40 +0.4
195,775 + BACOVA_02430 0.43 -0.5
195,775 + BACOVA_02430 0.43 -1.3
195,797 + BACOVA_02430 0.45 -0.1
195,797 + BACOVA_02430 0.45 +1.3
195,797 + BACOVA_02430 0.45 +0.4
195,798 - BACOVA_02430 0.45 -0.0
195,798 - BACOVA_02430 0.45 -1.2
195,798 - BACOVA_02430 0.45 +0.1
195,798 - BACOVA_02430 0.45 -1.1
195,819 - BACOVA_02430 0.46 +1.3
195,831 + BACOVA_02430 0.47 -0.9
196,051 - BACOVA_02430 0.64 +0.6
196,088 + BACOVA_02430 0.67 +0.8
196,088 + BACOVA_02430 0.67 +0.4
196,088 + BACOVA_02430 0.67 -0.3
196,089 - BACOVA_02430 0.67 -1.0
196,089 - BACOVA_02430 0.67 +0.2
196,089 - BACOVA_02430 0.67 +0.4
196,090 + BACOVA_02430 0.67 +0.6
196,091 - BACOVA_02430 0.67 +1.2
196,094 + BACOVA_02430 0.68 -0.0
196,095 - BACOVA_02430 0.68 +0.6
196,095 - BACOVA_02430 0.68 +0.3
196,132 - BACOVA_02430 0.71 +1.8
196,187 + BACOVA_02430 0.75 +1.0
196,188 - BACOVA_02430 0.75 -1.4
196,188 - BACOVA_02430 0.75 -1.3
196,194 - BACOVA_02430 0.75 +0.3
196,194 - BACOVA_02430 0.75 +1.1
196,198 - BACOVA_02430 0.76 -0.8
196,198 - BACOVA_02430 0.76 -0.5
196,224 - BACOVA_02430 0.78 +0.5
196,296 + BACOVA_02430 0.83 +0.8
196,297 - BACOVA_02430 0.83 -0.9
196,297 - BACOVA_02430 0.83 -1.0
196,300 + BACOVA_02430 0.84 +0.6
196,301 - BACOVA_02430 0.84 +0.2
196,394 + -0.5
196,394 + +0.7
196,395 - +0.9
196,459 - +0.1
196,489 + +0.7
196,490 - -1.2
196,490 - -0.9
196,490 - +0.6
196,509 + +0.7
196,510 - +0.8
196,536 + -0.5
196,539 - -0.0
196,543 - +0.0
196,637 + +0.7
196,638 - -0.2
196,670 - +0.5
196,670 - -0.5
196,730 + -0.3
196,874 - +0.7
196,890 - +0.1
196,904 - -0.4
197,013 + BACOVA_02432 0.13 -1.6
197,014 - BACOVA_02432 0.13 -1.5
197,061 - BACOVA_02432 0.19 -0.2
197,061 - BACOVA_02432 0.19 -0.2
197,141 + BACOVA_02432 0.27 -0.9
197,141 + BACOVA_02432 0.27 +1.1
197,141 + BACOVA_02432 0.27 -0.8
197,145 + BACOVA_02432 0.28 -0.4
197,146 - BACOVA_02432 0.28 -0.7
197,155 + BACOVA_02432 0.29 -0.5
197,158 - BACOVA_02432 0.29 -0.6
197,221 - BACOVA_02432 0.36 +0.2
197,229 + BACOVA_02432 0.37 -0.4
197,241 + BACOVA_02432 0.39 +0.1
197,248 - BACOVA_02432 0.39 +0.6
197,248 - BACOVA_02432 0.39 +0.7
197,290 + BACOVA_02432 0.44 -0.9
197,290 + BACOVA_02432 0.44 +0.3
197,291 - BACOVA_02432 0.44 -1.3
197,291 - BACOVA_02432 0.44 +1.6
197,297 - BACOVA_02432 0.45 +0.5
197,301 - BACOVA_02432 0.45 +0.7
197,311 + BACOVA_02432 0.46 -1.0
197,323 - BACOVA_02432 0.48 -0.9
197,362 - BACOVA_02432 0.52 +0.4
197,403 + BACOVA_02432 0.57 +0.9
197,403 + BACOVA_02432 0.57 -0.1
197,407 + BACOVA_02432 0.57 -0.5
197,407 + BACOVA_02432 0.57 +0.6
197,407 + BACOVA_02432 0.57 -0.4
197,408 - BACOVA_02432 0.57 +0.6
197,426 + BACOVA_02432 0.59 -0.1
197,439 + BACOVA_02432 0.61 +0.8
197,440 - BACOVA_02432 0.61 -0.9
197,442 - BACOVA_02432 0.61 +0.4
197,442 - BACOVA_02432 0.61 -1.0
197,445 + BACOVA_02432 0.61 +2.3
197,446 - BACOVA_02432 0.61 -0.7
197,446 - BACOVA_02432 0.61 -0.0
197,450 - BACOVA_02432 0.62 +0.3
197,450 - BACOVA_02432 0.62 +0.7
197,454 + BACOVA_02432 0.62 +0.6
197,454 + BACOVA_02432 0.62 -1.6
197,454 + BACOVA_02432 0.62 -1.1
197,455 - BACOVA_02432 0.62 -0.2
197,501 - BACOVA_02432 0.67 -0.3
197,503 - BACOVA_02432 0.68 -0.4

Or see this region's nucleotide sequence