Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04402

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04401 and OHPLBJKB_04402 are separated by 62 nucleotidesOHPLBJKB_04402 and OHPLBJKB_04403 are separated by 348 nucleotidesOHPLBJKB_04403 and OHPLBJKB_04404 overlap by 4 nucleotides OHPLBJKB_04401: OHPLBJKB_04401 - Protein TraC, at 57,740 to 60,367 _04401 OHPLBJKB_04402: OHPLBJKB_04402 - hypothetical protein, at 60,430 to 60,534 _04402 OHPLBJKB_04403: OHPLBJKB_04403 - Protein TraV, at 60,883 to 61,398 _04403 OHPLBJKB_04404: OHPLBJKB_04404 - hypothetical protein, at 61,395 to 61,646 _04404 Position (kb) 60 61Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 59.508 kb on + strand, within OHPLBJKB_04401at 59.508 kb on + strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.509 kb on - strand, within OHPLBJKB_04401at 59.664 kb on + strand, within OHPLBJKB_04401at 59.679 kb on + strand, within OHPLBJKB_04401at 59.722 kb on + strand, within OHPLBJKB_04401at 59.746 kb on + strand, within OHPLBJKB_04401at 59.878 kb on - strand, within OHPLBJKB_04401at 59.962 kb on + strand, within OHPLBJKB_04401at 59.962 kb on + strand, within OHPLBJKB_04401at 59.963 kb on - strand, within OHPLBJKB_04401at 59.963 kb on - strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.964 kb on + strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.965 kb on - strand, within OHPLBJKB_04401at 59.967 kb on + strand, within OHPLBJKB_04401at 59.968 kb on - strand, within OHPLBJKB_04401at 60.076 kb on + strand, within OHPLBJKB_04401at 60.115 kb on + strandat 60.116 kb on - strandat 60.116 kb on - strandat 60.116 kb on - strandat 60.175 kb on + strandat 60.176 kb on - strandat 60.222 kb on + strandat 60.223 kb on - strandat 60.421 kb on + strandat 60.428 kb on - strandat 60.431 kb on + strandat 60.511 kb on - strand, within OHPLBJKB_04402at 60.511 kb on - strand, within OHPLBJKB_04402at 60.528 kb on + strandat 60.529 kb on - strandat 60.866 kb on + strandat 60.918 kb on + strandat 60.951 kb on - strand, within OHPLBJKB_04403at 60.970 kb on - strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.972 kb on - strand, within OHPLBJKB_04403at 61.083 kb on + strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.354 kb on + strandat 61.355 kb on - strandat 61.355 kb on - strandat 61.357 kb on + strandat 61.357 kb on + strandat 61.505 kb on + strand, within OHPLBJKB_04404at 61.506 kb on - strand, within OHPLBJKB_04404at 61.508 kb on - strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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59,508 + OHPLBJKB_04401 0.67 +6.5
59,508 + OHPLBJKB_04401 0.67 +6.2
59,509 - OHPLBJKB_04401 0.67 +7.6
59,509 - OHPLBJKB_04401 0.67 +6.7
59,509 - OHPLBJKB_04401 0.67 +6.0
59,509 - OHPLBJKB_04401 0.67 +5.4
59,509 - OHPLBJKB_04401 0.67 +6.3
59,509 - OHPLBJKB_04401 0.67 +6.4
59,664 + OHPLBJKB_04401 0.73 +5.8
59,679 + OHPLBJKB_04401 0.74 +5.9
59,722 + OHPLBJKB_04401 0.75 +5.1
59,746 + OHPLBJKB_04401 0.76 +6.3
59,878 - OHPLBJKB_04401 0.81 +5.7
59,962 + OHPLBJKB_04401 0.85 +5.7
59,962 + OHPLBJKB_04401 0.85 +5.8
59,963 - OHPLBJKB_04401 0.85 +6.0
59,963 - OHPLBJKB_04401 0.85 +5.7
59,964 + OHPLBJKB_04401 0.85 +6.9
59,964 + OHPLBJKB_04401 0.85 +6.6
59,964 + OHPLBJKB_04401 0.85 +5.7
59,964 + OHPLBJKB_04401 0.85 +6.1
59,965 - OHPLBJKB_04401 0.85 +6.7
59,965 - OHPLBJKB_04401 0.85 +7.5
59,965 - OHPLBJKB_04401 0.85 +5.0
59,965 - OHPLBJKB_04401 0.85 +7.1
59,965 - OHPLBJKB_04401 0.85 +5.5
59,967 + OHPLBJKB_04401 0.85 +6.4
59,968 - OHPLBJKB_04401 0.85 +6.5
60,076 + OHPLBJKB_04401 0.89 +6.2
60,115 + +6.0
60,116 - +5.9
60,116 - +6.1
60,116 - +5.5
60,175 + +5.7
60,176 - +6.4
60,222 + +6.3
60,223 - +6.0
60,421 + +6.1
60,428 - -0.0
60,431 + +6.0
60,511 - OHPLBJKB_04402 0.77 -1.6
60,511 - OHPLBJKB_04402 0.77 -0.0
60,528 + +5.1
60,529 - +0.5
60,866 + +6.3
60,918 + +6.6
60,951 - OHPLBJKB_04403 0.13 +6.7
60,970 - OHPLBJKB_04403 0.17 +6.3
60,971 + OHPLBJKB_04403 0.17 +6.5
60,971 + OHPLBJKB_04403 0.17 +7.9
60,972 - OHPLBJKB_04403 0.17 +6.5
61,083 + OHPLBJKB_04403 0.39 +6.0
61,291 - OHPLBJKB_04403 0.79 +6.7
61,291 - OHPLBJKB_04403 0.79 +7.5
61,354 + +6.3
61,355 - +6.7
61,355 - +6.7
61,357 + +5.5
61,357 + +6.0
61,505 + OHPLBJKB_04404 0.44 +6.7
61,506 - OHPLBJKB_04404 0.44 +2.1
61,508 - OHPLBJKB_04404 0.45 -0.3
61,513 + OHPLBJKB_04404 0.47 +6.0
61,513 + OHPLBJKB_04404 0.47 +5.9

Or see this region's nucleotide sequence