Experiment: bur MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02548 and OHPLBJKB_02549 are separated by 5 nucleotides OHPLBJKB_02549 and OHPLBJKB_02550 overlap by 8 nucleotides OHPLBJKB_02550 and OHPLBJKB_02551 are separated by 261 nucleotides
OHPLBJKB_02548: OHPLBJKB_02548 - Lipoprotein-releasing system transmembrane protein LolE, at 2,660,374 to 2,661,612
_02548
OHPLBJKB_02549: OHPLBJKB_02549 - Lipoprotein-releasing system ATP-binding protein LolD, at 2,661,618 to 2,662,319
_02549
OHPLBJKB_02550: OHPLBJKB_02550 - Lipoprotein-releasing system transmembrane protein LolC, at 2,662,312 to 2,663,511
_02550
OHPLBJKB_02551: OHPLBJKB_02551 - Inner membrane protein YcfT, at 2,663,773 to 2,664,846
_02551
Position (kb)
2662
2663
2664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2663.550 kb on + strand at 2663.550 kb on + strand at 2663.550 kb on + strand at 2663.551 kb on - strand at 2663.551 kb on - strand at 2663.551 kb on - strand at 2663.551 kb on - strand at 2663.585 kb on - strand at 2663.672 kb on + strand at 2663.709 kb on + strand at 2663.715 kb on + strand at 2663.715 kb on + strand at 2663.716 kb on - strand at 2663.716 kb on - strand at 2663.716 kb on - strand at 2663.746 kb on + strand at 2663.746 kb on + strand at 2663.747 kb on - strand at 2663.789 kb on + strand at 2663.813 kb on + strand at 2663.817 kb on + strand at 2663.817 kb on + strand at 2663.817 kb on + strand at 2663.818 kb on - strand at 2663.918 kb on - strand, within OHPLBJKB_02551 at 2663.989 kb on + strand, within OHPLBJKB_02551 at 2663.989 kb on + strand, within OHPLBJKB_02551 at 2664.002 kb on + strand, within OHPLBJKB_02551 at 2664.125 kb on + strand, within OHPLBJKB_02551 at 2664.126 kb on - strand, within OHPLBJKB_02551 at 2664.126 kb on - strand, within OHPLBJKB_02551 at 2664.148 kb on + strand, within OHPLBJKB_02551 at 2664.148 kb on + strand, within OHPLBJKB_02551 at 2664.214 kb on + strand, within OHPLBJKB_02551 at 2664.221 kb on + strand, within OHPLBJKB_02551 at 2664.230 kb on - strand, within OHPLBJKB_02551 at 2664.269 kb on + strand, within OHPLBJKB_02551 at 2664.272 kb on + strand, within OHPLBJKB_02551 at 2664.272 kb on + strand, within OHPLBJKB_02551 at 2664.272 kb on + strand, within OHPLBJKB_02551 at 2664.287 kb on + strand, within OHPLBJKB_02551 at 2664.364 kb on + strand, within OHPLBJKB_02551 at 2664.365 kb on - strand, within OHPLBJKB_02551 at 2664.396 kb on - strand, within OHPLBJKB_02551 at 2664.396 kb on - strand, within OHPLBJKB_02551 at 2664.437 kb on + strand, within OHPLBJKB_02551 at 2664.483 kb on + strand, within OHPLBJKB_02551 at 2664.487 kb on - strand, within OHPLBJKB_02551
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI1 remove 2,663,550 + +0.5 2,663,550 + +1.2 2,663,550 + -0.2 2,663,551 - +1.5 2,663,551 - -1.6 2,663,551 - -1.7 2,663,551 - +0.3 2,663,585 - +0.6 2,663,672 + -1.2 2,663,709 + +0.9 2,663,715 + +1.0 2,663,715 + +0.7 2,663,716 - +0.9 2,663,716 - +0.5 2,663,716 - -0.5 2,663,746 + +0.9 2,663,746 + -0.1 2,663,747 - -1.6 2,663,789 + -2.4 2,663,813 + +1.8 2,663,817 + +0.3 2,663,817 + -1.6 2,663,817 + -2.6 2,663,818 - +1.6 2,663,918 - OHPLBJKB_02551 0.14 -1.2 2,663,989 + OHPLBJKB_02551 0.20 +1.0 2,663,989 + OHPLBJKB_02551 0.20 +0.4 2,664,002 + OHPLBJKB_02551 0.21 +0.0 2,664,125 + OHPLBJKB_02551 0.33 +0.9 2,664,126 - OHPLBJKB_02551 0.33 -0.2 2,664,126 - OHPLBJKB_02551 0.33 -1.7 2,664,148 + OHPLBJKB_02551 0.35 +0.3 2,664,148 + OHPLBJKB_02551 0.35 -1.1 2,664,214 + OHPLBJKB_02551 0.41 +1.1 2,664,221 + OHPLBJKB_02551 0.42 +1.7 2,664,230 - OHPLBJKB_02551 0.43 -1.6 2,664,269 + OHPLBJKB_02551 0.46 -1.7 2,664,272 + OHPLBJKB_02551 0.46 +0.6 2,664,272 + OHPLBJKB_02551 0.46 +1.7 2,664,272 + OHPLBJKB_02551 0.46 +0.8 2,664,287 + OHPLBJKB_02551 0.48 -2.2 2,664,364 + OHPLBJKB_02551 0.55 +2.0 2,664,365 - OHPLBJKB_02551 0.55 -0.4 2,664,396 - OHPLBJKB_02551 0.58 -1.4 2,664,396 - OHPLBJKB_02551 0.58 -0.2 2,664,437 + OHPLBJKB_02551 0.62 -1.0 2,664,483 + OHPLBJKB_02551 0.66 -0.0 2,664,487 - OHPLBJKB_02551 0.66 -0.6
Or see this region's nucleotide sequence