Experiment: bur MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02026 and OHPLBJKB_02027 are separated by 155 nucleotides OHPLBJKB_02027 and OHPLBJKB_02028 are separated by 313 nucleotides OHPLBJKB_02028 and OHPLBJKB_02029 are separated by 13 nucleotides OHPLBJKB_02029 and OHPLBJKB_02030 overlap by 4 nucleotides
OHPLBJKB_02026: OHPLBJKB_02026 - IS1 family transposase IS1A, at 2,101,261 to 2,101,536
_02026
OHPLBJKB_02027: OHPLBJKB_02027 - IS1 family transposase IS1S, at 2,101,692 to 2,101,958
_02027
OHPLBJKB_02028: OHPLBJKB_02028 - Crotonobetainyl-CoA reductase, at 2,102,272 to 2,103,423
_02028
OHPLBJKB_02029: OHPLBJKB_02029 - Acetate CoA-transferase YdiF, at 2,103,437 to 2,103,715
_02029
OHPLBJKB_02030: OHPLBJKB_02030 - Acetate CoA-transferase YdiF, at 2,103,712 to 2,105,031
_02030
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2101.995 kb on + strand at 2101.999 kb on + strand at 2101.999 kb on + strand at 2101.999 kb on + strand at 2101.999 kb on + strand at 2102.004 kb on + strand at 2102.004 kb on + strand at 2102.192 kb on + strand at 2102.192 kb on + strand at 2102.228 kb on - strand at 2102.273 kb on + strand at 2102.286 kb on - strand at 2102.311 kb on + strand at 2102.315 kb on + strand at 2102.315 kb on + strand at 2102.315 kb on + strand at 2102.316 kb on - strand at 2102.316 kb on - strand at 2102.316 kb on - strand at 2102.334 kb on + strand at 2102.397 kb on + strand, within OHPLBJKB_02028 at 2102.400 kb on - strand, within OHPLBJKB_02028 at 2102.556 kb on + strand, within OHPLBJKB_02028 at 2102.718 kb on - strand, within OHPLBJKB_02028 at 2102.718 kb on - strand, within OHPLBJKB_02028 at 2102.718 kb on - strand, within OHPLBJKB_02028 at 2102.811 kb on + strand, within OHPLBJKB_02028 at 2102.812 kb on - strand, within OHPLBJKB_02028 at 2102.827 kb on - strand, within OHPLBJKB_02028 at 2102.844 kb on + strand, within OHPLBJKB_02028 at 2102.845 kb on - strand, within OHPLBJKB_02028 at 2102.857 kb on - strand, within OHPLBJKB_02028 at 2102.931 kb on + strand, within OHPLBJKB_02028 at 2102.931 kb on + strand, within OHPLBJKB_02028 at 2102.932 kb on - strand, within OHPLBJKB_02028 at 2102.933 kb on + strand, within OHPLBJKB_02028 at 2102.933 kb on + strand, within OHPLBJKB_02028 at 2102.933 kb on + strand, within OHPLBJKB_02028 at 2102.933 kb on + strand, within OHPLBJKB_02028 at 2102.933 kb on + strand, within OHPLBJKB_02028 at 2102.934 kb on - strand, within OHPLBJKB_02028 at 2102.959 kb on - strand, within OHPLBJKB_02028 at 2102.981 kb on + strand, within OHPLBJKB_02028 at 2102.982 kb on - strand, within OHPLBJKB_02028 at 2103.005 kb on + strand, within OHPLBJKB_02028 at 2103.110 kb on - strand, within OHPLBJKB_02028 at 2103.110 kb on - strand, within OHPLBJKB_02028 at 2103.148 kb on - strand, within OHPLBJKB_02028 at 2103.274 kb on - strand, within OHPLBJKB_02028 at 2103.312 kb on - strand at 2103.312 kb on - strand at 2103.363 kb on + strand at 2103.428 kb on - strand at 2103.550 kb on + strand, within OHPLBJKB_02029 at 2103.637 kb on - strand, within OHPLBJKB_02029 at 2103.908 kb on + strand, within OHPLBJKB_02030 at 2104.012 kb on - strand, within OHPLBJKB_02030 at 2104.162 kb on + strand, within OHPLBJKB_02030 at 2104.163 kb on - strand, within OHPLBJKB_02030 at 2104.188 kb on + strand, within OHPLBJKB_02030 at 2104.189 kb on - strand, within OHPLBJKB_02030 at 2104.254 kb on - strand, within OHPLBJKB_02030 at 2104.321 kb on - strand, within OHPLBJKB_02030 at 2104.381 kb on - strand, within OHPLBJKB_02030 at 2104.385 kb on + strand, within OHPLBJKB_02030 at 2104.418 kb on + strand, within OHPLBJKB_02030 at 2104.418 kb on + strand, within OHPLBJKB_02030 at 2104.418 kb on + strand, within OHPLBJKB_02030
Per-strain Table
Position Strand Gene LocusTag Fraction bur MOI1 remove 2,101,995 + -2.0 2,101,999 + -0.5 2,101,999 + -0.6 2,101,999 + +0.1 2,101,999 + -0.8 2,102,004 + -1.0 2,102,004 + +1.3 2,102,192 + -2.0 2,102,192 + +1.0 2,102,228 - -1.9 2,102,273 + -0.0 2,102,286 - -0.4 2,102,311 + -0.7 2,102,315 + -0.5 2,102,315 + +0.9 2,102,315 + -1.3 2,102,316 - -0.6 2,102,316 - -0.5 2,102,316 - +0.1 2,102,334 + +2.0 2,102,397 + OHPLBJKB_02028 0.11 -1.8 2,102,400 - OHPLBJKB_02028 0.11 -0.3 2,102,556 + OHPLBJKB_02028 0.25 +1.3 2,102,718 - OHPLBJKB_02028 0.39 +0.1 2,102,718 - OHPLBJKB_02028 0.39 -0.2 2,102,718 - OHPLBJKB_02028 0.39 +0.2 2,102,811 + OHPLBJKB_02028 0.47 +1.3 2,102,812 - OHPLBJKB_02028 0.47 -1.4 2,102,827 - OHPLBJKB_02028 0.48 -0.0 2,102,844 + OHPLBJKB_02028 0.50 -0.0 2,102,845 - OHPLBJKB_02028 0.50 -0.0 2,102,857 - OHPLBJKB_02028 0.51 +0.3 2,102,931 + OHPLBJKB_02028 0.57 -1.0 2,102,931 + OHPLBJKB_02028 0.57 +0.0 2,102,932 - OHPLBJKB_02028 0.57 -0.0 2,102,933 + OHPLBJKB_02028 0.57 +0.7 2,102,933 + OHPLBJKB_02028 0.57 -0.3 2,102,933 + OHPLBJKB_02028 0.57 -2.0 2,102,933 + OHPLBJKB_02028 0.57 +0.0 2,102,933 + OHPLBJKB_02028 0.57 -1.4 2,102,934 - OHPLBJKB_02028 0.57 +0.8 2,102,959 - OHPLBJKB_02028 0.60 -0.5 2,102,981 + OHPLBJKB_02028 0.62 +1.1 2,102,982 - OHPLBJKB_02028 0.62 -1.4 2,103,005 + OHPLBJKB_02028 0.64 -0.1 2,103,110 - OHPLBJKB_02028 0.73 -0.2 2,103,110 - OHPLBJKB_02028 0.73 -1.0 2,103,148 - OHPLBJKB_02028 0.76 +1.0 2,103,274 - OHPLBJKB_02028 0.87 +0.7 2,103,312 - +1.3 2,103,312 - -0.6 2,103,363 + +1.8 2,103,428 - +0.3 2,103,550 + OHPLBJKB_02029 0.41 -0.0 2,103,637 - OHPLBJKB_02029 0.72 +1.0 2,103,908 + OHPLBJKB_02030 0.15 +0.1 2,104,012 - OHPLBJKB_02030 0.23 -2.6 2,104,162 + OHPLBJKB_02030 0.34 -1.9 2,104,163 - OHPLBJKB_02030 0.34 -0.5 2,104,188 + OHPLBJKB_02030 0.36 -0.1 2,104,189 - OHPLBJKB_02030 0.36 +0.6 2,104,254 - OHPLBJKB_02030 0.41 +0.2 2,104,321 - OHPLBJKB_02030 0.46 -0.6 2,104,381 - OHPLBJKB_02030 0.51 +1.0 2,104,385 + OHPLBJKB_02030 0.51 +1.8 2,104,418 + OHPLBJKB_02030 0.53 -1.6 2,104,418 + OHPLBJKB_02030 0.53 +3.0 2,104,418 + OHPLBJKB_02030 0.53 +0.3
Or see this region's nucleotide sequence