Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02028

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02026 and OHPLBJKB_02027 are separated by 155 nucleotidesOHPLBJKB_02027 and OHPLBJKB_02028 are separated by 313 nucleotidesOHPLBJKB_02028 and OHPLBJKB_02029 are separated by 13 nucleotidesOHPLBJKB_02029 and OHPLBJKB_02030 overlap by 4 nucleotides OHPLBJKB_02026: OHPLBJKB_02026 - IS1 family transposase IS1A, at 2,101,261 to 2,101,536 _02026 OHPLBJKB_02027: OHPLBJKB_02027 - IS1 family transposase IS1S, at 2,101,692 to 2,101,958 _02027 OHPLBJKB_02028: OHPLBJKB_02028 - Crotonobetainyl-CoA reductase, at 2,102,272 to 2,103,423 _02028 OHPLBJKB_02029: OHPLBJKB_02029 - Acetate CoA-transferase YdiF, at 2,103,437 to 2,103,715 _02029 OHPLBJKB_02030: OHPLBJKB_02030 - Acetate CoA-transferase YdiF, at 2,103,712 to 2,105,031 _02030 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2101.995 kb on + strandat 2101.999 kb on + strandat 2101.999 kb on + strandat 2101.999 kb on + strandat 2101.999 kb on + strandat 2102.004 kb on + strandat 2102.004 kb on + strandat 2102.192 kb on + strandat 2102.192 kb on + strandat 2102.228 kb on - strandat 2102.273 kb on + strandat 2102.286 kb on - strandat 2102.311 kb on + strandat 2102.315 kb on + strandat 2102.315 kb on + strandat 2102.315 kb on + strandat 2102.316 kb on - strandat 2102.316 kb on - strandat 2102.316 kb on - strandat 2102.334 kb on + strandat 2102.397 kb on + strand, within OHPLBJKB_02028at 2102.400 kb on - strand, within OHPLBJKB_02028at 2102.556 kb on + strand, within OHPLBJKB_02028at 2102.718 kb on - strand, within OHPLBJKB_02028at 2102.718 kb on - strand, within OHPLBJKB_02028at 2102.718 kb on - strand, within OHPLBJKB_02028at 2102.811 kb on + strand, within OHPLBJKB_02028at 2102.812 kb on - strand, within OHPLBJKB_02028at 2102.827 kb on - strand, within OHPLBJKB_02028at 2102.844 kb on + strand, within OHPLBJKB_02028at 2102.845 kb on - strand, within OHPLBJKB_02028at 2102.857 kb on - strand, within OHPLBJKB_02028at 2102.931 kb on + strand, within OHPLBJKB_02028at 2102.931 kb on + strand, within OHPLBJKB_02028at 2102.932 kb on - strand, within OHPLBJKB_02028at 2102.933 kb on + strand, within OHPLBJKB_02028at 2102.933 kb on + strand, within OHPLBJKB_02028at 2102.933 kb on + strand, within OHPLBJKB_02028at 2102.933 kb on + strand, within OHPLBJKB_02028at 2102.933 kb on + strand, within OHPLBJKB_02028at 2102.934 kb on - strand, within OHPLBJKB_02028at 2102.959 kb on - strand, within OHPLBJKB_02028at 2102.981 kb on + strand, within OHPLBJKB_02028at 2102.982 kb on - strand, within OHPLBJKB_02028at 2103.005 kb on + strand, within OHPLBJKB_02028at 2103.110 kb on - strand, within OHPLBJKB_02028at 2103.110 kb on - strand, within OHPLBJKB_02028at 2103.148 kb on - strand, within OHPLBJKB_02028at 2103.274 kb on - strand, within OHPLBJKB_02028at 2103.312 kb on - strandat 2103.312 kb on - strandat 2103.363 kb on + strandat 2103.428 kb on - strandat 2103.550 kb on + strand, within OHPLBJKB_02029at 2103.637 kb on - strand, within OHPLBJKB_02029at 2103.908 kb on + strand, within OHPLBJKB_02030at 2104.012 kb on - strand, within OHPLBJKB_02030at 2104.162 kb on + strand, within OHPLBJKB_02030at 2104.163 kb on - strand, within OHPLBJKB_02030at 2104.188 kb on + strand, within OHPLBJKB_02030at 2104.189 kb on - strand, within OHPLBJKB_02030at 2104.254 kb on - strand, within OHPLBJKB_02030at 2104.321 kb on - strand, within OHPLBJKB_02030at 2104.381 kb on - strand, within OHPLBJKB_02030at 2104.385 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030at 2104.418 kb on + strand, within OHPLBJKB_02030

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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2,101,995 + -2.0
2,101,999 + -0.5
2,101,999 + -0.6
2,101,999 + +0.1
2,101,999 + -0.8
2,102,004 + -1.0
2,102,004 + +1.3
2,102,192 + -2.0
2,102,192 + +1.0
2,102,228 - -1.9
2,102,273 + -0.0
2,102,286 - -0.4
2,102,311 + -0.7
2,102,315 + -0.5
2,102,315 + +0.9
2,102,315 + -1.3
2,102,316 - -0.6
2,102,316 - -0.5
2,102,316 - +0.1
2,102,334 + +2.0
2,102,397 + OHPLBJKB_02028 0.11 -1.8
2,102,400 - OHPLBJKB_02028 0.11 -0.3
2,102,556 + OHPLBJKB_02028 0.25 +1.3
2,102,718 - OHPLBJKB_02028 0.39 +0.1
2,102,718 - OHPLBJKB_02028 0.39 -0.2
2,102,718 - OHPLBJKB_02028 0.39 +0.2
2,102,811 + OHPLBJKB_02028 0.47 +1.3
2,102,812 - OHPLBJKB_02028 0.47 -1.4
2,102,827 - OHPLBJKB_02028 0.48 -0.0
2,102,844 + OHPLBJKB_02028 0.50 -0.0
2,102,845 - OHPLBJKB_02028 0.50 -0.0
2,102,857 - OHPLBJKB_02028 0.51 +0.3
2,102,931 + OHPLBJKB_02028 0.57 -1.0
2,102,931 + OHPLBJKB_02028 0.57 +0.0
2,102,932 - OHPLBJKB_02028 0.57 -0.0
2,102,933 + OHPLBJKB_02028 0.57 +0.7
2,102,933 + OHPLBJKB_02028 0.57 -0.3
2,102,933 + OHPLBJKB_02028 0.57 -2.0
2,102,933 + OHPLBJKB_02028 0.57 +0.0
2,102,933 + OHPLBJKB_02028 0.57 -1.4
2,102,934 - OHPLBJKB_02028 0.57 +0.8
2,102,959 - OHPLBJKB_02028 0.60 -0.5
2,102,981 + OHPLBJKB_02028 0.62 +1.1
2,102,982 - OHPLBJKB_02028 0.62 -1.4
2,103,005 + OHPLBJKB_02028 0.64 -0.1
2,103,110 - OHPLBJKB_02028 0.73 -0.2
2,103,110 - OHPLBJKB_02028 0.73 -1.0
2,103,148 - OHPLBJKB_02028 0.76 +1.0
2,103,274 - OHPLBJKB_02028 0.87 +0.7
2,103,312 - +1.3
2,103,312 - -0.6
2,103,363 + +1.8
2,103,428 - +0.3
2,103,550 + OHPLBJKB_02029 0.41 -0.0
2,103,637 - OHPLBJKB_02029 0.72 +1.0
2,103,908 + OHPLBJKB_02030 0.15 +0.1
2,104,012 - OHPLBJKB_02030 0.23 -2.6
2,104,162 + OHPLBJKB_02030 0.34 -1.9
2,104,163 - OHPLBJKB_02030 0.34 -0.5
2,104,188 + OHPLBJKB_02030 0.36 -0.1
2,104,189 - OHPLBJKB_02030 0.36 +0.6
2,104,254 - OHPLBJKB_02030 0.41 +0.2
2,104,321 - OHPLBJKB_02030 0.46 -0.6
2,104,381 - OHPLBJKB_02030 0.51 +1.0
2,104,385 + OHPLBJKB_02030 0.51 +1.8
2,104,418 + OHPLBJKB_02030 0.53 -1.6
2,104,418 + OHPLBJKB_02030 0.53 +3.0
2,104,418 + OHPLBJKB_02030 0.53 +0.3

Or see this region's nucleotide sequence