Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00221

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00218 and OHPLBJKB_00219 are separated by 245 nucleotidesOHPLBJKB_00219 and OHPLBJKB_00220 are separated by 104 nucleotidesOHPLBJKB_00220 and OHPLBJKB_00221 are separated by 87 nucleotidesOHPLBJKB_00221 and OHPLBJKB_00222 are separated by 202 nucleotidesOHPLBJKB_00222 and OHPLBJKB_00223 are separated by 5 nucleotides OHPLBJKB_00218: OHPLBJKB_00218 - ISAs1 family transposase ISEc1, at 240,075 to 240,254 _00218 OHPLBJKB_00219: OHPLBJKB_00219 - Protein YibA, at 240,500 to 240,745 _00219 OHPLBJKB_00220: OHPLBJKB_00220 - putative protein YbbC, at 240,850 to 241,116 _00220 OHPLBJKB_00221: OHPLBJKB_00221 - Protein RhsC, at 241,204 to 245,439 _00221 OHPLBJKB_00222: OHPLBJKB_00222 - Nickel-responsive regulator, at 245,642 to 246,043 _00222 OHPLBJKB_00223: OHPLBJKB_00223 - Nickel import ATP-binding protein NikE, at 246,049 to 246,855 _00223 Position (kb) 241 242 243 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 240.806 kb on + strandat 240.843 kb on + strandat 240.844 kb on - strandat 240.847 kb on + strandat 240.847 kb on + strandat 240.847 kb on + strandat 240.848 kb on - strandat 241.034 kb on - strand, within OHPLBJKB_00220at 241.330 kb on - strandat 241.524 kb on + strandat 241.602 kb on + strandat 241.602 kb on + strandat 241.607 kb on - strandat 241.607 kb on - strandat 241.608 kb on + strandat 241.630 kb on + strand, within OHPLBJKB_00221at 241.631 kb on - strand, within OHPLBJKB_00221at 241.631 kb on - strand, within OHPLBJKB_00221at 241.631 kb on - strand, within OHPLBJKB_00221at 241.663 kb on - strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.665 kb on + strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.666 kb on - strand, within OHPLBJKB_00221at 241.695 kb on + strand, within OHPLBJKB_00221at 241.695 kb on + strand, within OHPLBJKB_00221at 241.695 kb on + strand, within OHPLBJKB_00221at 241.695 kb on + strand, within OHPLBJKB_00221at 241.695 kb on + strand, within OHPLBJKB_00221at 241.696 kb on - strand, within OHPLBJKB_00221at 241.696 kb on - strand, within OHPLBJKB_00221at 241.700 kb on - strand, within OHPLBJKB_00221at 241.700 kb on - strand, within OHPLBJKB_00221at 241.745 kb on + strand, within OHPLBJKB_00221at 241.745 kb on + strand, within OHPLBJKB_00221at 241.746 kb on - strand, within OHPLBJKB_00221at 241.746 kb on - strand, within OHPLBJKB_00221at 245.358 kb on + strandat 245.358 kb on + strandat 245.455 kb on + strandat 245.464 kb on - strandat 245.472 kb on + strandat 245.472 kb on + strandat 245.473 kb on - strandat 245.534 kb on + strandat 245.534 kb on + strandat 245.534 kb on + strandat 245.535 kb on - strandat 245.535 kb on - strandat 245.536 kb on + strandat 245.540 kb on + strandat 245.541 kb on - strandat 245.574 kb on - strandat 245.574 kb on - strandat 245.577 kb on + strandat 245.578 kb on - strandat 245.598 kb on - strandat 245.638 kb on - strandat 245.638 kb on - strandat 245.833 kb on + strand, within OHPLBJKB_00222at 245.834 kb on - strand, within OHPLBJKB_00222at 245.844 kb on - strand, within OHPLBJKB_00222at 245.865 kb on + strand, within OHPLBJKB_00222at 245.865 kb on + strand, within OHPLBJKB_00222at 245.865 kb on + strand, within OHPLBJKB_00222at 245.866 kb on - strand, within OHPLBJKB_00222at 245.866 kb on - strand, within OHPLBJKB_00222at 245.866 kb on - strand, within OHPLBJKB_00222at 245.871 kb on + strand, within OHPLBJKB_00222at 245.871 kb on + strand, within OHPLBJKB_00222at 245.871 kb on + strand, within OHPLBJKB_00222at 245.872 kb on - strand, within OHPLBJKB_00222at 245.872 kb on - strand, within OHPLBJKB_00222at 245.872 kb on - strand, within OHPLBJKB_00222at 245.968 kb on + strand, within OHPLBJKB_00222at 245.968 kb on + strand, within OHPLBJKB_00222at 245.968 kb on + strand, within OHPLBJKB_00222at 245.968 kb on + strand, within OHPLBJKB_00222at 245.968 kb on + strand, within OHPLBJKB_00222at 245.969 kb on - strand, within OHPLBJKB_00222at 245.969 kb on - strand, within OHPLBJKB_00222at 245.971 kb on - strand, within OHPLBJKB_00222at 245.971 kb on - strand, within OHPLBJKB_00222at 245.971 kb on - strand, within OHPLBJKB_00222at 246.106 kb on + strandat 246.220 kb on + strand, within OHPLBJKB_00223at 246.220 kb on + strand, within OHPLBJKB_00223at 246.221 kb on - strand, within OHPLBJKB_00223at 246.221 kb on - strand, within OHPLBJKB_00223at 246.221 kb on - strand, within OHPLBJKB_00223at 246.266 kb on - strand, within OHPLBJKB_00223at 246.298 kb on + strand, within OHPLBJKB_00223at 246.341 kb on - strand, within OHPLBJKB_00223at 246.401 kb on - strand, within OHPLBJKB_00223

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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240,806 + +0.6
240,843 + -1.4
240,844 - -0.7
240,847 + -0.5
240,847 + -1.2
240,847 + +0.6
240,848 - -0.9
241,034 - OHPLBJKB_00220 0.69 -0.6
241,330 - -0.4
241,524 + +1.9
241,602 + +1.2
241,602 + +3.7
241,607 - -0.5
241,607 - -1.2
241,608 + -0.1
241,630 + OHPLBJKB_00221 0.10 +0.6
241,631 - OHPLBJKB_00221 0.10 -0.8
241,631 - OHPLBJKB_00221 0.10 -0.4
241,631 - OHPLBJKB_00221 0.10 -1.1
241,663 - OHPLBJKB_00221 0.11 +0.2
241,665 + OHPLBJKB_00221 0.11 -1.8
241,665 + OHPLBJKB_00221 0.11 -0.8
241,665 + OHPLBJKB_00221 0.11 +0.3
241,665 + OHPLBJKB_00221 0.11 +1.3
241,665 + OHPLBJKB_00221 0.11 -1.7
241,665 + OHPLBJKB_00221 0.11 -1.4
241,665 + OHPLBJKB_00221 0.11 -1.9
241,665 + OHPLBJKB_00221 0.11 -0.5
241,665 + OHPLBJKB_00221 0.11 -1.7
241,665 + OHPLBJKB_00221 0.11 +0.7
241,666 - OHPLBJKB_00221 0.11 -0.4
241,666 - OHPLBJKB_00221 0.11 -2.1
241,666 - OHPLBJKB_00221 0.11 -2.7
241,666 - OHPLBJKB_00221 0.11 +0.1
241,666 - OHPLBJKB_00221 0.11 -0.9
241,666 - OHPLBJKB_00221 0.11 +1.1
241,695 + OHPLBJKB_00221 0.12 -1.1
241,695 + OHPLBJKB_00221 0.12 -1.8
241,695 + OHPLBJKB_00221 0.12 -1.4
241,695 + OHPLBJKB_00221 0.12 +0.5
241,695 + OHPLBJKB_00221 0.12 -0.9
241,696 - OHPLBJKB_00221 0.12 +0.7
241,696 - OHPLBJKB_00221 0.12 -0.4
241,700 - OHPLBJKB_00221 0.12 -1.0
241,700 - OHPLBJKB_00221 0.12 -0.8
241,745 + OHPLBJKB_00221 0.13 +1.4
241,745 + OHPLBJKB_00221 0.13 -0.0
241,746 - OHPLBJKB_00221 0.13 -2.7
241,746 - OHPLBJKB_00221 0.13 +0.7
245,358 + -0.9
245,358 + -0.7
245,455 + -0.3
245,464 - -1.5
245,472 + -0.8
245,472 + +1.6
245,473 - -2.7
245,534 + +0.1
245,534 + -1.3
245,534 + +0.6
245,535 - -1.2
245,535 - -1.8
245,536 + +0.3
245,540 + +0.4
245,541 - +1.0
245,574 - -3.4
245,574 - +0.0
245,577 + -1.8
245,578 - -3.0
245,598 - +1.4
245,638 - +0.5
245,638 - -1.5
245,833 + OHPLBJKB_00222 0.48 -0.5
245,834 - OHPLBJKB_00222 0.48 +0.1
245,844 - OHPLBJKB_00222 0.50 -1.9
245,865 + OHPLBJKB_00222 0.55 +0.4
245,865 + OHPLBJKB_00222 0.55 +0.8
245,865 + OHPLBJKB_00222 0.55 -0.3
245,866 - OHPLBJKB_00222 0.56 +2.1
245,866 - OHPLBJKB_00222 0.56 +2.8
245,866 - OHPLBJKB_00222 0.56 +2.5
245,871 + OHPLBJKB_00222 0.57 +0.6
245,871 + OHPLBJKB_00222 0.57 +0.5
245,871 + OHPLBJKB_00222 0.57 -0.2
245,872 - OHPLBJKB_00222 0.57 +0.1
245,872 - OHPLBJKB_00222 0.57 +1.7
245,872 - OHPLBJKB_00222 0.57 -0.1
245,968 + OHPLBJKB_00222 0.81 +0.9
245,968 + OHPLBJKB_00222 0.81 +0.0
245,968 + OHPLBJKB_00222 0.81 -0.0
245,968 + OHPLBJKB_00222 0.81 +1.5
245,968 + OHPLBJKB_00222 0.81 +1.0
245,969 - OHPLBJKB_00222 0.81 +2.3
245,969 - OHPLBJKB_00222 0.81 +0.4
245,971 - OHPLBJKB_00222 0.82 -0.8
245,971 - OHPLBJKB_00222 0.82 -0.2
245,971 - OHPLBJKB_00222 0.82 -2.6
246,106 + -0.6
246,220 + OHPLBJKB_00223 0.21 -0.5
246,220 + OHPLBJKB_00223 0.21 -0.2
246,221 - OHPLBJKB_00223 0.21 -0.1
246,221 - OHPLBJKB_00223 0.21 -2.4
246,221 - OHPLBJKB_00223 0.21 -0.6
246,266 - OHPLBJKB_00223 0.27 +0.4
246,298 + OHPLBJKB_00223 0.31 -1.7
246,341 - OHPLBJKB_00223 0.36 -1.6
246,401 - OHPLBJKB_00223 0.44 +0.3

Or see this region's nucleotide sequence