Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00120

Experiment: bur MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00119 and OHPLBJKB_00120 are separated by 123 nucleotidesOHPLBJKB_00120 and OHPLBJKB_00121 are separated by 346 nucleotides OHPLBJKB_00119: OHPLBJKB_00119 - hypothetical protein, at 128,632 to 129,606 _00119 OHPLBJKB_00120: OHPLBJKB_00120 - MltA-interacting protein, at 129,730 to 130,470 _00120 OHPLBJKB_00121: OHPLBJKB_00121 - L-ribulose-5-phosphate 4-epimerase SgbE, at 130,817 to 131,512 _00121 Position (kb) 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 128.744 kb on + strand, within OHPLBJKB_00119at 128.918 kb on + strand, within OHPLBJKB_00119at 129.016 kb on - strand, within OHPLBJKB_00119at 129.068 kb on + strand, within OHPLBJKB_00119at 129.083 kb on + strand, within OHPLBJKB_00119at 129.147 kb on - strand, within OHPLBJKB_00119at 129.154 kb on + strand, within OHPLBJKB_00119at 129.155 kb on - strand, within OHPLBJKB_00119at 129.281 kb on + strand, within OHPLBJKB_00119at 129.285 kb on + strand, within OHPLBJKB_00119at 129.285 kb on + strand, within OHPLBJKB_00119at 129.286 kb on - strand, within OHPLBJKB_00119at 129.336 kb on + strand, within OHPLBJKB_00119at 129.336 kb on + strand, within OHPLBJKB_00119at 129.338 kb on + strand, within OHPLBJKB_00119at 129.392 kb on + strand, within OHPLBJKB_00119at 129.393 kb on - strand, within OHPLBJKB_00119at 129.393 kb on - strand, within OHPLBJKB_00119at 129.520 kb on + strandat 129.588 kb on + strandat 129.589 kb on - strandat 129.824 kb on - strand, within OHPLBJKB_00120at 129.879 kb on + strand, within OHPLBJKB_00120at 130.013 kb on - strand, within OHPLBJKB_00120at 130.033 kb on - strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.042 kb on - strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.045 kb on - strand, within OHPLBJKB_00120at 130.175 kb on + strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.213 kb on + strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.243 kb on + strand, within OHPLBJKB_00120at 130.244 kb on - strand, within OHPLBJKB_00120at 130.315 kb on + strand, within OHPLBJKB_00120at 130.379 kb on - strand, within OHPLBJKB_00120at 130.438 kb on - strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.579 kb on - strandat 130.579 kb on - strandat 130.611 kb on + strandat 130.611 kb on + strandat 130.611 kb on + strandat 130.612 kb on - strandat 130.679 kb on + strandat 130.679 kb on + strandat 130.725 kb on + strandat 130.726 kb on - strandat 130.726 kb on - strandat 130.773 kb on + strandat 130.773 kb on + strandat 130.819 kb on - strandat 130.849 kb on + strandat 130.857 kb on + strandat 130.858 kb on - strandat 130.927 kb on + strand, within OHPLBJKB_00121at 130.927 kb on + strand, within OHPLBJKB_00121at 130.928 kb on - strand, within OHPLBJKB_00121at 130.929 kb on + strand, within OHPLBJKB_00121at 130.929 kb on + strand, within OHPLBJKB_00121at 130.930 kb on - strand, within OHPLBJKB_00121at 130.930 kb on - strand, within OHPLBJKB_00121at 130.947 kb on - strand, within OHPLBJKB_00121at 130.957 kb on + strand, within OHPLBJKB_00121at 130.957 kb on + strand, within OHPLBJKB_00121at 131.086 kb on - strand, within OHPLBJKB_00121at 131.091 kb on + strand, within OHPLBJKB_00121at 131.370 kb on + strand, within OHPLBJKB_00121at 131.393 kb on + strand, within OHPLBJKB_00121

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI1
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128,744 + OHPLBJKB_00119 0.11 +1.2
128,918 + OHPLBJKB_00119 0.29 +0.1
129,016 - OHPLBJKB_00119 0.39 +0.3
129,068 + OHPLBJKB_00119 0.45 +1.8
129,083 + OHPLBJKB_00119 0.46 -1.2
129,147 - OHPLBJKB_00119 0.53 +0.4
129,154 + OHPLBJKB_00119 0.54 -0.5
129,155 - OHPLBJKB_00119 0.54 -0.5
129,281 + OHPLBJKB_00119 0.67 -1.9
129,285 + OHPLBJKB_00119 0.67 +0.1
129,285 + OHPLBJKB_00119 0.67 +1.2
129,286 - OHPLBJKB_00119 0.67 -1.3
129,336 + OHPLBJKB_00119 0.72 +0.5
129,336 + OHPLBJKB_00119 0.72 +0.4
129,338 + OHPLBJKB_00119 0.72 +1.3
129,392 + OHPLBJKB_00119 0.78 +0.8
129,393 - OHPLBJKB_00119 0.78 -1.9
129,393 - OHPLBJKB_00119 0.78 +0.9
129,520 + +2.1
129,588 + +0.1
129,589 - +0.8
129,824 - OHPLBJKB_00120 0.13 -1.1
129,879 + OHPLBJKB_00120 0.20 -0.3
130,013 - OHPLBJKB_00120 0.38 -0.1
130,033 - OHPLBJKB_00120 0.41 -0.9
130,041 + OHPLBJKB_00120 0.42 -2.8
130,041 + OHPLBJKB_00120 0.42 -1.4
130,042 - OHPLBJKB_00120 0.42 +0.4
130,044 + OHPLBJKB_00120 0.42 +0.2
130,044 + OHPLBJKB_00120 0.42 -1.2
130,045 - OHPLBJKB_00120 0.43 -1.3
130,175 + OHPLBJKB_00120 0.60 +0.0
130,176 - OHPLBJKB_00120 0.60 -1.5
130,176 - OHPLBJKB_00120 0.60 -0.2
130,176 - OHPLBJKB_00120 0.60 +0.9
130,213 + OHPLBJKB_00120 0.65 -1.3
130,214 - OHPLBJKB_00120 0.65 -0.3
130,214 - OHPLBJKB_00120 0.65 -2.3
130,214 - OHPLBJKB_00120 0.65 +0.9
130,214 - OHPLBJKB_00120 0.65 -1.3
130,214 - OHPLBJKB_00120 0.65 -0.9
130,216 + OHPLBJKB_00120 0.66 +0.8
130,216 + OHPLBJKB_00120 0.66 +0.7
130,237 + OHPLBJKB_00120 0.68 -0.2
130,237 + OHPLBJKB_00120 0.68 +1.1
130,237 + OHPLBJKB_00120 0.68 +0.6
130,238 - OHPLBJKB_00120 0.69 +0.2
130,238 - OHPLBJKB_00120 0.69 -0.3
130,240 + OHPLBJKB_00120 0.69 +0.5
130,240 + OHPLBJKB_00120 0.69 -2.1
130,240 + OHPLBJKB_00120 0.69 +1.3
130,241 - OHPLBJKB_00120 0.69 -1.3
130,241 - OHPLBJKB_00120 0.69 -0.9
130,241 - OHPLBJKB_00120 0.69 -0.4
130,243 + OHPLBJKB_00120 0.69 +1.9
130,244 - OHPLBJKB_00120 0.69 +0.1
130,315 + OHPLBJKB_00120 0.79 -0.5
130,379 - OHPLBJKB_00120 0.88 -0.2
130,438 - +0.1
130,468 + +1.1
130,468 + +0.0
130,579 - +0.9
130,579 - +1.1
130,611 + -0.5
130,611 + -0.4
130,611 + +0.9
130,612 - +1.3
130,679 + +0.9
130,679 + -1.3
130,725 + +1.4
130,726 - +0.8
130,726 - -2.5
130,773 + +2.0
130,773 + +1.4
130,819 - -1.0
130,849 + +0.5
130,857 + +0.1
130,858 - +1.3
130,927 + OHPLBJKB_00121 0.16 -1.0
130,927 + OHPLBJKB_00121 0.16 +3.0
130,928 - OHPLBJKB_00121 0.16 +1.7
130,929 + OHPLBJKB_00121 0.16 -0.3
130,929 + OHPLBJKB_00121 0.16 -0.5
130,930 - OHPLBJKB_00121 0.16 +1.1
130,930 - OHPLBJKB_00121 0.16 -1.3
130,947 - OHPLBJKB_00121 0.19 -0.2
130,957 + OHPLBJKB_00121 0.20 -0.5
130,957 + OHPLBJKB_00121 0.20 -1.9
131,086 - OHPLBJKB_00121 0.39 +0.9
131,091 + OHPLBJKB_00121 0.39 +0.9
131,370 + OHPLBJKB_00121 0.79 -2.1
131,393 + OHPLBJKB_00121 0.83 +2.8

Or see this region's nucleotide sequence