Strain Fitness in Escherichia fergusonii Becca around EFB2_04741

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,987,327	+				+0.8
4,987,327	+				-0.0
4,987,328	-				-1.4
4,987,351	+				+1.0
4,987,531	+		EFB2_04740	0.23	+0.5
4,987,531	+		EFB2_04740	0.23	+0.2
4,987,531	+		EFB2_04740	0.23	-0.4
4,987,531	+		EFB2_04740	0.23	+0.3
4,987,531	+		EFB2_04740	0.23	+0.7
4,987,532	-		EFB2_04740	0.23	-0.4
4,987,532	-		EFB2_04740	0.23	+0.8
4,987,532	-		EFB2_04740	0.23	-0.3
4,987,532	-		EFB2_04740	0.23	-1.9
4,987,532	-		EFB2_04740	0.23	+1.7
4,987,536	+		EFB2_04740	0.23	-0.2
4,987,536	+		EFB2_04740	0.23	-1.4
4,987,536	+		EFB2_04740	0.23	-0.6
4,987,536	+		EFB2_04740	0.23	-0.3
4,987,536	+		EFB2_04740	0.23	+1.6
4,987,536	+		EFB2_04740	0.23	-2.9
4,987,536	+		EFB2_04740	0.23	+0.1
4,987,537	-		EFB2_04740	0.23	+0.2
4,987,537	-		EFB2_04740	0.23	+0.2
4,987,537	-		EFB2_04740	0.23	+0.6
4,987,537	-		EFB2_04740	0.23	-2.5
4,987,537	-		EFB2_04740	0.23	+1.4
4,987,537	-		EFB2_04740	0.23	+0.2
4,987,537	-		EFB2_04740	0.23	-1.2
4,987,537	-		EFB2_04740	0.23	-0.9
4,987,537	-		EFB2_04740	0.23	-0.0
4,987,537	-		EFB2_04740	0.23	-0.2
4,987,567	+		EFB2_04740	0.27	+0.7
4,987,568	-		EFB2_04740	0.27	+0.6
4,987,592	-		EFB2_04740	0.29	-0.6
4,987,651	+		EFB2_04740	0.36	-1.0
4,987,651	+		EFB2_04740	0.36	-1.1
4,987,651	+		EFB2_04740	0.36	-0.6
4,987,652	-		EFB2_04740	0.36	-3.2
4,987,655	+		EFB2_04740	0.36	-0.3
4,987,655	+		EFB2_04740	0.36	+0.1
4,987,655	+		EFB2_04740	0.36	+0.2
4,987,655	+		EFB2_04740	0.36	-0.2
4,987,656	-		EFB2_04740	0.37	+0.8
4,987,656	-		EFB2_04740	0.37	+1.2
4,987,656	-		EFB2_04740	0.37	+1.6
4,987,656	-		EFB2_04740	0.37	-0.1
4,987,692	+		EFB2_04740	0.41	-2.2
4,987,693	-		EFB2_04740	0.41	-0.7
4,987,693	-		EFB2_04740	0.41	+0.2
4,987,715	+		EFB2_04740	0.43	-1.2
4,987,715	+		EFB2_04740	0.43	+1.1
4,987,715	+		EFB2_04740	0.43	-3.3
4,987,716	-		EFB2_04740	0.43	+0.1
4,987,716	-		EFB2_04740	0.43	-0.6
4,987,716	-		EFB2_04740	0.43	+0.7
4,987,716	-		EFB2_04740	0.43	-0.5
4,987,716	-		EFB2_04740	0.43	+0.4
4,987,747	+		EFB2_04740	0.47	+0.7
4,987,747	+		EFB2_04740	0.47	-3.5
4,987,747	+		EFB2_04740	0.47	-0.3
4,987,748	-		EFB2_04740	0.47	+0.4
4,987,748	-		EFB2_04740	0.47	-0.4
4,987,753	+		EFB2_04740	0.47	-1.4
4,987,803	+		EFB2_04740	0.53	-3.2
4,987,804	-		EFB2_04740	0.53	+0.6
4,987,813	+		EFB2_04740	0.54	-0.3
4,987,814	-		EFB2_04740	0.54	-0.6
4,987,814	-		EFB2_04740	0.54	-0.8
4,987,828	+		EFB2_04740	0.56	-0.6
4,987,829	-		EFB2_04740	0.56	+1.1
4,987,829	-		EFB2_04740	0.56	+0.7
4,987,948	+		EFB2_04740	0.69	-2.1
4,987,948	+		EFB2_04740	0.69	-0.3
4,987,948	+		EFB2_04740	0.69	-0.3
4,987,948	+		EFB2_04740	0.69	+1.7
4,987,948	+		EFB2_04740	0.69	+0.8
4,987,948	+		EFB2_04740	0.69	-0.3
4,987,948	+		EFB2_04740	0.69	+0.5
4,987,948	+		EFB2_04740	0.69	+2.1
4,987,949	-		EFB2_04740	0.69	-0.3
4,987,949	-		EFB2_04740	0.69	+1.3
4,987,949	-		EFB2_04740	0.69	+1.2
4,987,949	-		EFB2_04740	0.69	-0.5
4,987,949	-		EFB2_04740	0.69	-0.3
4,987,949	-		EFB2_04740	0.69	-1.6
4,987,949	-		EFB2_04740	0.69	-0.1
4,987,955	+		EFB2_04740	0.70	+0.6
4,987,955	+		EFB2_04740	0.70	+0.2
4,987,955	+		EFB2_04740	0.70	-1.1
4,987,955	+		EFB2_04740	0.70	+1.0
4,987,955	+		EFB2_04740	0.70	+0.9
4,987,955	+		EFB2_04740	0.70	+0.1
4,987,955	+		EFB2_04740	0.70	+0.4
4,987,955	+		EFB2_04740	0.70	-1.0
4,987,955	+		EFB2_04740	0.70	+0.2
4,987,955	+		EFB2_04740	0.70	-1.5
4,987,955	+		EFB2_04740	0.70	-0.8
4,987,955	+		EFB2_04740	0.70	+0.2
4,987,955	+		EFB2_04740	0.70	-0.3
4,987,956	-		EFB2_04740	0.70	+0.1
4,987,956	-		EFB2_04740	0.70	-0.8
4,987,956	-		EFB2_04740	0.70	-0.1
4,987,956	-		EFB2_04740	0.70	-0.2
4,987,956	-		EFB2_04740	0.70	-1.0
4,987,956	-		EFB2_04740	0.70	-2.7
4,987,956	-		EFB2_04740	0.70	+0.7
4,987,956	-		EFB2_04740	0.70	-0.6
4,987,956	-		EFB2_04740	0.70	-2.8
4,987,956	-		EFB2_04740	0.70	-1.6
4,987,956	-		EFB2_04740	0.70	-0.8
4,987,956	-		EFB2_04740	0.70	+0.9
4,987,956	-		EFB2_04740	0.70	+0.7
4,987,960	+		EFB2_04740	0.70	+0.8
4,987,960	+		EFB2_04740	0.70	-2.6
4,987,960	+		EFB2_04740	0.70	+0.1
4,987,960	+		EFB2_04740	0.70	+0.4
4,987,961	-		EFB2_04740	0.71	+0.0
4,987,961	-		EFB2_04740	0.71	+1.0
4,987,961	-		EFB2_04740	0.71	-0.6
4,987,961	-		EFB2_04740	0.71	+0.0
4,987,961	-		EFB2_04740	0.71	-1.7
4,987,961	-		EFB2_04740	0.71	-0.1
4,988,041	+		EFB2_04740	0.79	-0.6
4,988,042	-		EFB2_04740	0.80	-1.3
4,988,042	-		EFB2_04740	0.80	+0.0
4,988,042	-		EFB2_04740	0.80	+0.6
4,988,042	-		EFB2_04740	0.80	+0.6
4,988,116	+		EFB2_04740	0.88	+0.2
4,988,117	-		EFB2_04740	0.88	-3.1
4,988,117	-		EFB2_04740	0.88	+0.8
4,988,117	-		EFB2_04740	0.88	-0.2
4,988,152	+				-2.8
4,988,152	+				+1.4
4,988,152	+				-1.4
4,988,153	-				+1.1
4,988,153	-				+1.1
4,988,153	-				+1.2
4,988,153	-				-1.7
4,988,153	-				-1.6
4,988,182	+				-0.2
4,988,182	+				+0.2
4,988,183	-				-3.5
4,988,223	-				-0.2
4,988,231	-				+0.4
4,988,238	+				-0.2
4,988,238	+				+1.3
4,988,238	+				-0.6
4,988,238	+				+0.8
4,988,238	+				-0.2
4,988,259	+				-1.6
4,988,259	+				-1.2
4,988,259	+				-0.0
4,988,259	+				-2.0
4,988,259	+				-1.4
4,988,259	+				-2.3
4,988,260	-				+0.3
4,988,260	-				+1.5
4,988,260	-				-1.2
4,988,260	-				-1.4
4,988,260	-				+0.6
4,988,269	+				+0.3
4,988,269	+				-1.6
4,988,269	+				-3.0
4,988,269	+				+0.7
4,988,269	+				+0.2
4,988,269	+				-1.9
4,988,269	+				-1.6
4,988,270	-				+0.3
4,988,270	-				+0.2
4,988,270	-				-3.2
4,988,270	-				+0.0
4,988,270	-				+1.2
4,988,270	-				-1.0
4,988,270	-				-2.2
4,988,270	-				-0.9
4,988,270	-				+3.2
4,988,270	-				+3.2
4,988,287	+				-1.0
4,988,287	+				-0.9
4,988,288	-				-2.0
4,988,288	-				-0.8
4,988,288	-				-0.4
4,988,288	-				+0.2
4,988,288	-				-1.0
4,988,316	+				-0.7
4,988,316	+				-1.7
4,988,316	+				+0.7
4,988,316	+				+2.0
4,988,317	-				-1.1
4,988,317	-				-1.9
4,988,333	+				+1.7
4,988,333	+				+0.7
4,988,333	+				-1.5
4,988,333	+				+0.6
4,988,333	+				+0.9
4,988,334	-				-1.2
4,988,334	-				-0.7
4,988,334	-				+0.9
4,988,334	-				-1.0
4,988,334	-				-1.4
4,988,334	-				-0.1
4,988,334	-				-1.7
4,988,335	+				-0.2
4,988,335	+				-0.4
4,988,335	+				+1.8
4,988,335	+				+1.8
4,988,335	+				+2.6
4,988,335	+				+0.6
4,988,335	+				+1.3
4,988,335	+				-0.2
4,988,335	+				-2.6
4,988,335	+				+1.6
4,988,335	+				-0.1
4,988,335	+				+0.1
4,988,335	+				+0.0
4,988,335	+				-0.4
4,988,335	+				+0.4
4,988,336	-				+0.7
4,988,336	-				+1.3
4,988,336	-				+0.3
4,988,336	-				+2.0
4,988,336	-				-2.7
4,988,336	-				-0.1
4,988,336	-				+0.1
4,988,336	-				+0.2
4,988,336	-				+1.8
4,988,336	-				-3.1
4,988,336	-				+0.5
4,988,336	-				-3.5
4,988,336	-				+1.4
4,988,336	-				+2.0
4,988,336	-				+1.4
4,988,342	-				+0.7
4,988,470	+		EFB2_04741	0.26	+0.3
4,988,540	+		EFB2_04741	0.35	-1.8
4,988,541	-		EFB2_04741	0.35	-3.1
4,988,541	-		EFB2_04741	0.35	+2.3
4,988,541	-		EFB2_04741	0.35	-0.1
4,988,566	+		EFB2_04741	0.38	+1.0
4,988,566	+		EFB2_04741	0.38	-2.8
4,988,566	+		EFB2_04741	0.38	-0.5
4,988,567	-		EFB2_04741	0.38	+0.5
4,988,567	-		EFB2_04741	0.38	+0.2
4,988,578	+		EFB2_04741	0.40	+0.5
4,988,578	+		EFB2_04741	0.40	-1.2
4,988,578	+		EFB2_04741	0.40	+0.8
4,988,579	-		EFB2_04741	0.40	-1.0
4,988,579	-		EFB2_04741	0.40	-1.3
4,988,586	+		EFB2_04741	0.41	-0.1
4,988,586	+		EFB2_04741	0.41	+0.4
4,988,586	+		EFB2_04741	0.41	-2.4
4,988,586	+		EFB2_04741	0.41	+1.8
4,988,586	+		EFB2_04741	0.41	+0.9
4,988,586	+		EFB2_04741	0.41	-0.4
4,988,586	+		EFB2_04741	0.41	-2.8
4,988,586	+		EFB2_04741	0.41	-2.1
4,988,587	-		EFB2_04741	0.41	+0.7
4,988,587	-		EFB2_04741	0.41	+0.3
4,988,587	-		EFB2_04741	0.41	+0.8
4,988,587	-		EFB2_04741	0.41	+0.4
4,988,607	+		EFB2_04741	0.43	-1.9
4,988,608	-		EFB2_04741	0.44	+4.5
4,988,608	-		EFB2_04741	0.44	+3.4
4,988,608	-		EFB2_04741	0.44	-0.2
4,988,625	+		EFB2_04741	0.46	-0.3
4,988,625	+		EFB2_04741	0.46	+0.4
4,988,625	+		EFB2_04741	0.46	+0.5
4,988,625	+		EFB2_04741	0.46	+0.5
4,988,626	-		EFB2_04741	0.46	+1.1
4,988,633	-		EFB2_04741	0.47	+0.6
4,988,638	+		EFB2_04741	0.47	+0.5
4,988,638	+		EFB2_04741	0.47	+0.4
4,988,638	+		EFB2_04741	0.47	-0.8
4,988,639	-		EFB2_04741	0.48	+0.5
4,988,641	+		EFB2_04741	0.48	-0.1
4,988,641	+		EFB2_04741	0.48	+1.3
4,988,641	+		EFB2_04741	0.48	-1.0
4,988,641	+		EFB2_04741	0.48	+0.7
4,988,641	+		EFB2_04741	0.48	+0.5
4,988,641	+		EFB2_04741	0.48	+0.7
4,988,642	-		EFB2_04741	0.48	+1.1
4,988,642	-		EFB2_04741	0.48	+0.8
4,988,642	-		EFB2_04741	0.48	-1.5
4,988,667	-		EFB2_04741	0.51	+0.4
4,988,668	+		EFB2_04741	0.51	-0.6
4,988,710	-		EFB2_04741	0.57	+0.1
4,988,755	+		EFB2_04741	0.62	-0.9
4,988,777	+		EFB2_04741	0.65	-3.3
4,988,778	-		EFB2_04741	0.65	-1.8
4,988,778	-		EFB2_04741	0.65	-0.3
4,988,778	-		EFB2_04741	0.65	-2.0
4,988,781	+		EFB2_04741	0.66	+0.9
4,988,781	+		EFB2_04741	0.66	+0.8
4,988,781	+		EFB2_04741	0.66	+0.4
4,988,781	+		EFB2_04741	0.66	+0.8
4,988,782	-		EFB2_04741	0.66	+2.6
4,988,782	-		EFB2_04741	0.66	+0.6
4,988,782	-		EFB2_04741	0.66	-0.6
4,988,791	+		EFB2_04741	0.67	-0.5
4,988,792	-		EFB2_04741	0.67	+0.2
4,988,793	+		EFB2_04741	0.67	-0.8
4,988,793	+		EFB2_04741	0.67	-0.6
4,988,793	+		EFB2_04741	0.67	+0.8
4,988,793	+		EFB2_04741	0.67	-1.6
4,988,793	+		EFB2_04741	0.67	-0.6
4,988,793	+		EFB2_04741	0.67	-1.0
4,988,793	+		EFB2_04741	0.67	-0.4
4,988,793	+		EFB2_04741	0.67	-1.1
4,988,793	+		EFB2_04741	0.67	-0.3
4,988,793	+		EFB2_04741	0.67	+1.3
4,988,793	+		EFB2_04741	0.67	+0.0
4,988,793	+		EFB2_04741	0.67	+1.7
4,988,793	+		EFB2_04741	0.67	+0.3
4,988,793	+		EFB2_04741	0.67	-0.6
4,988,793	+		EFB2_04741	0.67	-1.6
4,988,793	+		EFB2_04741	0.67	-1.2
4,988,793	+		EFB2_04741	0.67	+0.3
4,988,793	+		EFB2_04741	0.67	+0.4
4,988,793	+		EFB2_04741	0.67	-0.8
4,988,793	+		EFB2_04741	0.67	+0.9
4,988,793	+		EFB2_04741	0.67	+0.3
4,988,793	+		EFB2_04741	0.67	-0.9
4,988,793	+		EFB2_04741	0.67	-0.5
4,988,793	+		EFB2_04741	0.67	-0.0
4,988,793	+		EFB2_04741	0.67	+0.9
4,988,793	+		EFB2_04741	0.67	-0.2
4,988,793	+		EFB2_04741	0.67	+0.6
4,988,793	+		EFB2_04741	0.67	+0.7
4,988,793	+		EFB2_04741	0.67	+1.2
4,988,793	+		EFB2_04741	0.67	+0.3
4,988,794	-		EFB2_04741	0.67	+0.9
4,988,794	-		EFB2_04741	0.67	+0.6
4,988,794	-		EFB2_04741	0.67	-1.0
4,988,794	-		EFB2_04741	0.67	-2.3
4,988,794	-		EFB2_04741	0.67	-0.6
4,988,794	-		EFB2_04741	0.67	-2.2
4,988,794	-		EFB2_04741	0.67	+1.3
4,988,794	-		EFB2_04741	0.67	-1.2
4,988,794	-		EFB2_04741	0.67	+1.0
4,988,794	-		EFB2_04741	0.67	+1.6
4,988,794	-		EFB2_04741	0.67	+2.0
4,988,794	-		EFB2_04741	0.67	-2.3
4,988,794	-		EFB2_04741	0.67	-3.3
4,988,794	-		EFB2_04741	0.67	-1.8
4,988,794	-		EFB2_04741	0.67	-0.7
4,988,794	-		EFB2_04741	0.67	+0.4
4,988,794	-		EFB2_04741	0.67	+2.0
4,988,794	-		EFB2_04741	0.67	+0.8
4,988,794	-		EFB2_04741	0.67	-1.4
4,988,794	-		EFB2_04741	0.67	+0.4
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