Strain Fitness in Escherichia fergusonii Becca around EFB2_04550

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,778,306	-		EFB2_04549	0.30	-0.8
4,778,377	+		EFB2_04549	0.36	-3.0
4,778,377	+		EFB2_04549	0.36	-0.4
4,778,377	+		EFB2_04549	0.36	+0.9
4,778,378	-		EFB2_04549	0.37	-0.7
4,778,378	-		EFB2_04549	0.37	-0.1
4,778,378	-		EFB2_04549	0.37	-0.3
4,778,378	-		EFB2_04549	0.37	-0.4
4,778,378	-		EFB2_04549	0.37	-0.7
4,778,378	-		EFB2_04549	0.37	+0.2
4,778,390	+		EFB2_04549	0.38	+1.6
4,778,390	+		EFB2_04549	0.38	-1.0
4,778,390	+		EFB2_04549	0.38	-0.9
4,778,391	-		EFB2_04549	0.38	-0.7
4,778,419	-		EFB2_04549	0.40	-2.5
4,778,434	+		EFB2_04549	0.42	+1.2
4,778,434	+		EFB2_04549	0.42	+1.9
4,778,434	+		EFB2_04549	0.42	-1.4
4,778,434	+		EFB2_04549	0.42	-0.3
4,778,434	+		EFB2_04549	0.42	+0.4
4,778,434	+		EFB2_04549	0.42	-2.9
4,778,434	+		EFB2_04549	0.42	-2.2
4,778,434	+		EFB2_04549	0.42	+0.4
4,778,434	+		EFB2_04549	0.42	-2.8
4,778,434	+		EFB2_04549	0.42	+5.2
4,778,434	+		EFB2_04549	0.42	+1.4
4,778,434	+		EFB2_04549	0.42	+0.2
4,778,434	+		EFB2_04549	0.42	+0.5
4,778,435	-		EFB2_04549	0.42	-0.8
4,778,435	-		EFB2_04549	0.42	+0.4
4,778,435	-		EFB2_04549	0.42	+1.6
4,778,435	-		EFB2_04549	0.42	+1.3
4,778,435	-		EFB2_04549	0.42	-1.2
4,778,435	-		EFB2_04549	0.42	-0.8
4,778,435	-		EFB2_04549	0.42	+0.4
4,778,435	-		EFB2_04549	0.42	+0.1
4,778,435	-		EFB2_04549	0.42	-1.1
4,778,435	-		EFB2_04549	0.42	-0.4
4,778,443	+		EFB2_04549	0.43	-1.5
4,778,443	+		EFB2_04549	0.43	+0.8
4,778,443	+		EFB2_04549	0.43	-0.6
4,778,443	+		EFB2_04549	0.43	-1.4
4,778,444	-		EFB2_04549	0.43	-0.3
4,778,444	-		EFB2_04549	0.43	-3.3
4,778,444	-		EFB2_04549	0.43	-2.5
4,778,455	+		EFB2_04549	0.44	+0.1
4,778,455	+		EFB2_04549	0.44	+0.3
4,778,455	+		EFB2_04549	0.44	-0.2
4,778,455	+		EFB2_04549	0.44	-1.7
4,778,455	+		EFB2_04549	0.44	-3.6
4,778,456	-		EFB2_04549	0.44	-0.1
4,778,456	-		EFB2_04549	0.44	-0.1
4,778,456	-		EFB2_04549	0.44	+2.1
4,778,456	-		EFB2_04549	0.44	+0.0
4,778,464	+		EFB2_04549	0.45	-0.6
4,778,464	+		EFB2_04549	0.45	+1.1
4,778,464	+		EFB2_04549	0.45	-1.1
4,778,465	-		EFB2_04549	0.45	-1.3
4,778,490	+		EFB2_04549	0.47	+1.0
4,778,490	+		EFB2_04549	0.47	-0.3
4,778,490	+		EFB2_04549	0.47	-0.5
4,778,490	+		EFB2_04549	0.47	-2.9
4,778,490	+		EFB2_04549	0.47	-0.1
4,778,490	+		EFB2_04549	0.47	-0.1
4,778,490	+		EFB2_04549	0.47	+0.6
4,778,491	-		EFB2_04549	0.47	-0.4
4,778,491	-		EFB2_04549	0.47	+0.4
4,778,491	-		EFB2_04549	0.47	+1.0
4,778,491	-		EFB2_04549	0.47	+1.0
4,778,508	-		EFB2_04549	0.49	+1.4
4,778,535	+		EFB2_04549	0.52	-0.4
4,778,535	+		EFB2_04549	0.52	-0.2
4,778,535	+		EFB2_04549	0.52	-0.0
4,778,535	+		EFB2_04549	0.52	+0.6
4,778,536	-		EFB2_04549	0.52	+1.6
4,778,536	-		EFB2_04549	0.52	+1.1
4,778,536	-		EFB2_04549	0.52	-1.2
4,778,579	+		EFB2_04549	0.56	+1.9
4,778,579	+		EFB2_04549	0.56	-0.4
4,778,580	-		EFB2_04549	0.56	+0.4
4,778,580	-		EFB2_04549	0.56	-1.4
4,778,580	-		EFB2_04549	0.56	-0.2
4,778,580	-		EFB2_04549	0.56	-1.0
4,778,580	-		EFB2_04549	0.56	+0.8
4,778,582	+		EFB2_04549	0.56	+0.1
4,778,582	+		EFB2_04549	0.56	-0.8
4,778,582	+		EFB2_04549	0.56	+0.5
4,778,582	+		EFB2_04549	0.56	-0.4
4,778,582	+		EFB2_04549	0.56	-1.6
4,778,582	+		EFB2_04549	0.56	+0.8
4,778,583	-		EFB2_04549	0.56	+0.4
4,778,583	-		EFB2_04549	0.56	+0.8
4,778,583	-		EFB2_04549	0.56	+1.1
4,778,583	-		EFB2_04549	0.56	+0.4
4,778,583	-		EFB2_04549	0.56	+1.3
4,778,583	-		EFB2_04549	0.56	+1.2
4,778,605	-		EFB2_04549	0.58	+0.8
4,778,605	-		EFB2_04549	0.58	-0.2
4,778,612	+		EFB2_04549	0.59	-1.0
4,778,612	+		EFB2_04549	0.59	+0.1
4,778,629	+		EFB2_04549	0.61	-1.1
4,778,629	+		EFB2_04549	0.61	-0.4
4,778,629	+		EFB2_04549	0.61	-0.5
4,778,629	+		EFB2_04549	0.61	+0.5
4,778,629	+		EFB2_04549	0.61	+1.3
4,778,630	-		EFB2_04549	0.61	-1.2
4,778,630	-		EFB2_04549	0.61	-0.1
4,778,630	-		EFB2_04549	0.61	-0.4
4,778,630	-		EFB2_04549	0.61	-1.9
4,778,680	+		EFB2_04549	0.66	-1.4
4,778,680	+		EFB2_04549	0.66	-0.4
4,778,680	+		EFB2_04549	0.66	+0.3
4,778,680	+		EFB2_04549	0.66	+0.1
4,778,680	+		EFB2_04549	0.66	-3.2
4,778,680	+		EFB2_04549	0.66	+0.3
4,778,681	-		EFB2_04549	0.66	-1.0
4,778,681	-		EFB2_04549	0.66	+1.8
4,778,681	-		EFB2_04549	0.66	-1.1
4,778,707	+		EFB2_04549	0.68	+1.1
4,778,708	-		EFB2_04549	0.68	-1.4
4,778,719	+		EFB2_04549	0.69	-1.4
4,778,719	+		EFB2_04549	0.69	+1.2
4,778,719	+		EFB2_04549	0.69	+0.6
4,778,720	-		EFB2_04549	0.70	+1.3
4,778,720	-		EFB2_04549	0.70	-0.0
4,778,720	-		EFB2_04549	0.70	-1.4
4,778,720	-		EFB2_04549	0.70	+0.1
4,778,737	+		EFB2_04549	0.71	-0.6
4,778,737	+		EFB2_04549	0.71	-1.0
4,778,738	-		EFB2_04549	0.71	-1.4
4,778,738	-		EFB2_04549	0.71	+1.6
4,778,773	+		EFB2_04549	0.75	+0.8
4,778,773	+		EFB2_04549	0.75	-0.8
4,778,773	+		EFB2_04549	0.75	+0.1
4,778,774	-		EFB2_04549	0.75	+0.8
4,778,774	-		EFB2_04549	0.75	+0.2
4,778,774	-		EFB2_04549	0.75	+3.1
4,778,774	-		EFB2_04549	0.75	+0.2
4,778,776	+		EFB2_04549	0.75	-0.1
4,778,776	+		EFB2_04549	0.75	-3.2
4,778,777	-		EFB2_04549	0.75	+0.4
4,778,777	-		EFB2_04549	0.75	+0.5
4,778,798	+		EFB2_04549	0.77	+0.7
4,778,798	+		EFB2_04549	0.77	+0.5
4,778,798	+		EFB2_04549	0.77	+1.2
4,778,816	+		EFB2_04549	0.79	-1.2
4,778,816	+		EFB2_04549	0.79	+1.5
4,778,816	+		EFB2_04549	0.79	-0.1
4,778,817	-		EFB2_04549	0.79	-1.9
4,778,817	-		EFB2_04549	0.79	-0.6
4,778,817	-		EFB2_04549	0.79	-2.9
4,778,817	-		EFB2_04549	0.79	+0.6
4,778,817	-		EFB2_04549	0.79	-1.9
4,778,824	+		EFB2_04549	0.80	+0.2
4,778,824	+		EFB2_04549	0.80	+0.5
4,778,824	+		EFB2_04549	0.80	+1.1
4,778,825	-		EFB2_04549	0.80	+0.4
4,778,825	-		EFB2_04549	0.80	-2.3
4,778,867	-		EFB2_04549	0.84	-0.6
4,778,867	-		EFB2_04549	0.84	-0.3
4,778,867	-		EFB2_04549	0.84	+0.9
4,778,868	+		EFB2_04549	0.84	-1.4
4,778,868	+		EFB2_04549	0.84	+1.3
4,778,868	+		EFB2_04549	0.84	+0.9
4,778,868	+		EFB2_04549	0.84	-2.6
4,778,868	+		EFB2_04549	0.84	-1.7
4,778,868	+		EFB2_04549	0.84	+1.7
4,778,868	+		EFB2_04549	0.84	-0.9
4,778,868	+		EFB2_04549	0.84	-0.6
4,778,868	+		EFB2_04549	0.84	-1.1
4,778,868	+		EFB2_04549	0.84	-0.2
4,778,868	+		EFB2_04549	0.84	+0.2
4,778,868	+		EFB2_04549	0.84	+0.3
4,778,868	+		EFB2_04549	0.84	+0.7
4,778,868	+		EFB2_04549	0.84	+0.7
4,778,868	+		EFB2_04549	0.84	+0.5
4,778,868	+		EFB2_04549	0.84	+0.7
4,778,868	+		EFB2_04549	0.84	+0.6
4,778,869	-		EFB2_04549	0.84	-0.1
4,778,869	-		EFB2_04549	0.84	+0.4
4,778,869	-		EFB2_04549	0.84	+1.1
4,778,869	-		EFB2_04549	0.84	+0.7
4,778,869	-		EFB2_04549	0.84	-0.4
4,778,869	-		EFB2_04549	0.84	-0.0
4,778,869	-		EFB2_04549	0.84	-1.0
4,778,869	-		EFB2_04549	0.84	+0.2
4,778,869	-		EFB2_04549	0.84	+1.0
4,778,869	-		EFB2_04549	0.84	+1.5
4,778,869	-		EFB2_04549	0.84	-1.3
4,778,869	-		EFB2_04549	0.84	-0.6
4,778,869	-		EFB2_04549	0.84	-0.8
4,778,869	-		EFB2_04549	0.84	-1.9
4,778,869	-		EFB2_04549	0.84	-3.3
4,778,869	-		EFB2_04549	0.84	-0.3
4,778,874	+		EFB2_04549	0.84	+0.6
4,778,874	+		EFB2_04549	0.84	-1.5
4,778,875	-		EFB2_04549	0.85	-0.3
4,778,875	-		EFB2_04549	0.85	-0.7
4,778,875	-		EFB2_04549	0.85	+1.2
4,778,875	-		EFB2_04549	0.85	-2.8
4,778,875	-		EFB2_04549	0.85	-1.9
4,778,875	-		EFB2_04549	0.85	-0.0
4,778,879	+		EFB2_04549	0.85	+0.6
4,778,879	+		EFB2_04549	0.85	-1.1
4,778,879	+		EFB2_04549	0.85	+1.1
4,778,879	+		EFB2_04549	0.85	+0.0
4,778,879	+		EFB2_04549	0.85	+0.2
4,778,879	+		EFB2_04549	0.85	-0.1
4,778,879	+		EFB2_04549	0.85	+0.1
4,778,879	+		EFB2_04549	0.85	-1.3
4,778,879	+		EFB2_04549	0.85	+2.1
4,778,879	+		EFB2_04549	0.85	-0.7
4,778,879	+		EFB2_04549	0.85	+0.6
4,778,879	+		EFB2_04549	0.85	+0.1
4,778,879	+		EFB2_04549	0.85	-0.3
4,778,880	-		EFB2_04549	0.85	+0.2
4,778,880	-		EFB2_04549	0.85	-0.3
4,778,880	-		EFB2_04549	0.85	+1.0
4,778,880	-		EFB2_04549	0.85	+0.4
4,778,880	-		EFB2_04549	0.85	-0.2
4,778,880	-		EFB2_04549	0.85	-3.6
4,778,880	-		EFB2_04549	0.85	+0.4
4,778,880	-		EFB2_04549	0.85	+0.4
4,778,880	-		EFB2_04549	0.85	+1.4
4,778,926	+		EFB2_04549	0.89	+0.0
4,778,927	-		EFB2_04549	0.90	-0.3
4,778,927	-		EFB2_04549	0.90	+1.0
4,779,019	+				-0.6
4,779,020	-				+0.3
4,779,053	+				-0.3
4,779,054	-				-0.0
4,779,054	-				-0.9
4,779,054	-				-3.6
4,779,068	+				+0.2
4,779,068	+				+0.7
4,779,068	+				+1.7
4,779,068	+				+0.7
4,779,068	+				+0.8
4,779,068	+				-0.6
4,779,068	+				-0.1
4,779,069	-				+0.6
4,779,069	-				+0.5
4,779,069	-				+0.5
4,779,069	-				-3.1
4,779,069	-				+0.1
4,779,069	-				-0.6
4,779,069	-				+1.3
4,779,069	-				+0.9
4,779,073	+				-0.7
4,779,074	-				-2.9
4,779,078	+				+2.2
4,779,078	+				+2.4
4,779,078	+				+0.9
4,779,078	+				+0.6
4,779,079	-				+0.1
4,779,079	-				+0.8
4,779,079	-				-1.4
4,779,079	-				+1.6
4,779,079	-				-0.4
4,779,079	-				-0.3
4,779,079	-				-2.6
4,779,079	-				-0.2
4,779,079	-				-0.6
4,779,079	-				-3.4
4,779,089	+				+1.3
4,779,089	+				-0.1
4,779,089	+				-0.7
4,779,089	+				+0.2
4,779,089	+				-0.9
4,779,089	+				+0.7
4,779,089	+				-1.8
4,779,089	+				+2.1
4,779,089	+				+1.2
4,779,090	-				+0.0
4,779,090	-				+2.4
4,779,090	-				+0.0
4,779,090	-				+1.7
4,779,090	-				+1.1
4,779,090	-				+1.2
4,779,171	+				-1.5
4,779,289	+				-3.6
4,779,289	+				+2.6
4,779,301	-				+0.9
4,779,301	-				-0.5
4,779,408	+				-0.2
4,779,408	+				+0.6
4,779,408	+				+1.1
4,779,408	+				+0.9
4,779,408	+				+0.2
4,779,408	+				+0.5
4,779,408	+				+0.6
4,779,408	+				-0.3
4,779,408	+				+0.4
4,779,408	+				-1.1
4,779,408	+				+1.4
4,779,408	+				-0.4
4,779,408	+				-1.2
4,779,408	+				+1.5
4,779,408	+				-0.3
4,779,408	+				+0.2
4,779,408	+				+0.4
4,779,408	+				-0.8
4,779,408	+				-1.2
4,779,409	-				-0.1
4,779,409	-				-2.8
4,779,409	-				+1.7
4,779,409	-				-0.4
4,779,409	-				-0.3
4,779,409	-				-1.9
4,779,409	-				+0.2
4,779,478	+		EFB2_04550	0.12	+1.1
4,779,478	+		EFB2_04550	0.12	-0.0
4,779,478	+		EFB2_04550	0.12	-1.0
4,779,478	+		EFB2_04550	0.12	+0.3
4,779,478	+		EFB2_04550	0.12	-0.5
4,779,478	+		EFB2_04550	0.12	+1.7
4,779,478	+		EFB2_04550	0.12	-0.3
4,779,478	+		EFB2_04550	0.12	-1.1
4,779,478	+		EFB2_04550	0.12	-0.0
4,779,478	+		EFB2_04550	0.12	+0.2
4,779,478	+		EFB2_04550	0.12	-0.9
4,779,478	+		EFB2_04550	0.12	+0.5
4,779,478	+		EFB2_04550	0.12	-0.0
4,779,478	+		EFB2_04550	0.12	-0.1
4,779,478	+		EFB2_04550	0.12	-1.4
4,779,478	+		EFB2_04550	0.12	-0.5
4,779,478	+		EFB2_04550	0.12	-1.5
4,779,478	+		EFB2_04550	0.12	-1.1
4,779,478	+		EFB2_04550	0.12	+0.0
4,779,478	+		EFB2_04550	0.12	+0.3
4,779,478	+		EFB2_04550	0.12	+0.1
4,779,478	+		EFB2_04550	0.12	-0.1
4,779,478	+		EFB2_04550	0.12	-0.1
4,779,478	+		EFB2_04550	0.12	+0.0
4,779,478	+		EFB2_04550	0.12	+0.1
4,779,478	+		EFB2_04550	0.12	+1.8
4,779,478	+		EFB2_04550	0.12	-0.7
4,779,479	-		EFB2_04550	0.12	+0.1
4,779,479	-		EFB2_04550	0.12	+0.5
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