Strain Fitness in Escherichia fergusonii Becca around EFB2_04396

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,615,612	+		EFB2_04394	0.87	-0.1
4,615,613	-		EFB2_04394	0.87	-1.2
4,615,613	-		EFB2_04394	0.87	+0.7
4,615,617	+		EFB2_04394	0.87	-0.3
4,615,638	+		EFB2_04394	0.89	+0.8
4,615,638	+		EFB2_04394	0.89	+0.1
4,615,639	-		EFB2_04394	0.89	-1.3
4,615,639	-		EFB2_04394	0.89	+0.4
4,615,659	+				-2.9
4,615,659	+				-1.4
4,615,659	+				-1.1
4,615,659	+				+0.7
4,615,659	+				+0.8
4,615,659	+				+0.7
4,615,660	-				+0.1
4,615,660	-				-0.5
4,615,660	-				+0.4
4,615,660	-				-0.5
4,615,660	-				+0.6
4,615,662	+				-1.5
4,615,662	+				+0.5
4,615,662	+				-0.4
4,615,662	+				-0.1
4,615,662	+				-1.1
4,615,662	+				-0.9
4,615,662	+				+0.5
4,615,662	+				+0.1
4,615,663	-				+0.7
4,615,663	-				+1.3
4,615,663	-				+0.2
4,615,663	-				-0.7
4,615,663	-				-1.3
4,615,663	-				+1.5
4,615,663	-				-0.2
4,615,663	-				+0.4
4,615,663	-				-1.6
4,615,663	-				-0.4
4,615,663	-				-2.4
4,615,674	+				+0.9
4,615,704	-				+0.3
4,615,771	-				-0.5
4,615,771	-				-0.7
4,615,778	+				+1.3
4,615,778	+				-0.2
4,615,778	+				-0.8
4,615,778	+				+0.6
4,615,779	-				+0.4
4,615,779	-				+0.6
4,615,779	-				-0.0
4,615,779	-				+0.1
4,615,797	+				+0.4
4,615,797	+				-0.5
4,615,797	+				+1.0
4,615,798	-				-1.7
4,615,798	-				+1.3
4,615,816	+				+0.7
4,615,816	+				+1.4
4,615,816	+				+0.4
4,615,817	-				+1.3
4,615,817	-				+2.1
4,615,817	-				+0.2
4,615,817	-				+1.2
4,615,817	-				-1.1
4,615,817	-				+0.6
4,615,854	+		EFB2_04395	0.12	-0.5
4,615,854	+		EFB2_04395	0.12	-1.6
4,615,854	+		EFB2_04395	0.12	-1.1
4,615,854	+		EFB2_04395	0.12	+0.9
4,615,854	+		EFB2_04395	0.12	-0.1
4,615,855	-		EFB2_04395	0.12	-0.0
4,615,855	-		EFB2_04395	0.12	+0.9
4,615,870	+		EFB2_04395	0.16	+1.3
4,615,870	+		EFB2_04395	0.16	-0.4
4,615,871	-		EFB2_04395	0.16	+0.1
4,615,871	-		EFB2_04395	0.16	-1.1
4,615,871	-		EFB2_04395	0.16	+1.1
4,615,871	-		EFB2_04395	0.16	+0.4
4,615,894	+		EFB2_04395	0.21	-2.5
4,615,973	+		EFB2_04395	0.37	+1.7
4,615,973	+		EFB2_04395	0.37	-2.0
4,615,973	+		EFB2_04395	0.37	-0.5
4,615,974	-		EFB2_04395	0.37	+0.0
4,616,015	+		EFB2_04395	0.46	+0.4
4,616,015	+		EFB2_04395	0.46	-2.7
4,616,016	-		EFB2_04395	0.46	+0.4
4,616,016	-		EFB2_04395	0.46	+0.9
4,616,016	-		EFB2_04395	0.46	+1.3
4,616,016	-		EFB2_04395	0.46	+1.3
4,616,016	-		EFB2_04395	0.46	-0.7
4,616,053	+		EFB2_04395	0.54	-3.0
4,616,053	+		EFB2_04395	0.54	-3.3
4,616,053	+		EFB2_04395	0.54	-1.8
4,616,053	+		EFB2_04395	0.54	+1.2
4,616,053	+		EFB2_04395	0.54	-3.0
4,616,053	+		EFB2_04395	0.54	+0.1
4,616,053	+		EFB2_04395	0.54	+0.5
4,616,053	+		EFB2_04395	0.54	-0.4
4,616,054	-		EFB2_04395	0.54	+0.1
4,616,054	-		EFB2_04395	0.54	-0.1
4,616,054	-		EFB2_04395	0.54	+1.8
4,616,133	-		EFB2_04395	0.71	+1.4
4,616,143	+		EFB2_04395	0.73	-0.3
4,616,143	+		EFB2_04395	0.73	+0.2
4,616,143	+		EFB2_04395	0.73	+0.1
4,616,143	+		EFB2_04395	0.73	+2.3
4,616,143	+		EFB2_04395	0.73	-0.9
4,616,143	+		EFB2_04395	0.73	-0.4
4,616,143	+		EFB2_04395	0.73	+0.2
4,616,144	-		EFB2_04395	0.73	+0.3
4,616,144	-		EFB2_04395	0.73	-0.5
4,616,144	-		EFB2_04395	0.73	+1.0
4,616,144	-		EFB2_04395	0.73	-0.9
4,616,144	-		EFB2_04395	0.73	+0.5
4,616,144	-		EFB2_04395	0.73	-0.9
4,616,144	-		EFB2_04395	0.73	-0.7
4,616,144	-		EFB2_04395	0.73	-0.0
4,616,144	-		EFB2_04395	0.73	+0.3
4,616,144	-		EFB2_04395	0.73	-2.0
4,616,144	-		EFB2_04395	0.73	+0.1
4,616,162	+		EFB2_04395	0.77	+0.6
4,616,162	+		EFB2_04395	0.77	-2.5
4,616,162	+		EFB2_04395	0.77	+1.7
4,616,162	+		EFB2_04395	0.77	-0.7
4,616,162	+		EFB2_04395	0.77	-3.4
4,616,162	+		EFB2_04395	0.77	-2.1
4,616,162	+		EFB2_04395	0.77	+0.6
4,616,162	+		EFB2_04395	0.77	-1.3
4,616,162	+		EFB2_04395	0.77	+0.1
4,616,162	+		EFB2_04395	0.77	+1.3
4,616,162	+		EFB2_04395	0.77	+1.5
4,616,162	+		EFB2_04395	0.77	+1.0
4,616,162	+		EFB2_04395	0.77	-4.0
4,616,162	+		EFB2_04395	0.77	-0.6
4,616,162	+		EFB2_04395	0.77	+1.5
4,616,163	-		EFB2_04395	0.77	+0.5
4,616,163	-		EFB2_04395	0.77	+2.1
4,616,163	-		EFB2_04395	0.77	-1.6
4,616,163	-		EFB2_04395	0.77	-3.8
4,616,163	-		EFB2_04395	0.77	+1.9
4,616,163	-		EFB2_04395	0.77	-0.1
4,616,163	-		EFB2_04395	0.77	-0.9
4,616,163	-		EFB2_04395	0.77	+0.7
4,616,163	-		EFB2_04395	0.77	+0.8
4,616,163	-		EFB2_04395	0.77	-3.2
4,616,163	-		EFB2_04395	0.77	+1.3
4,616,163	-		EFB2_04395	0.77	-0.0
4,616,163	-		EFB2_04395	0.77	-0.4
4,616,163	-		EFB2_04395	0.77	+1.7
4,616,163	-		EFB2_04395	0.77	+0.3
4,616,163	-		EFB2_04395	0.77	+0.6
4,616,164	+		EFB2_04395	0.77	+0.5
4,616,164	+		EFB2_04395	0.77	-0.8
4,616,165	-		EFB2_04395	0.77	+0.5
4,616,165	-		EFB2_04395	0.77	+0.5
4,616,165	-		EFB2_04395	0.77	-2.5
4,616,186	+		EFB2_04395	0.82	+1.3
4,616,195	+		EFB2_04395	0.84	-0.4
4,616,195	+		EFB2_04395	0.84	+1.3
4,616,195	+		EFB2_04395	0.84	-1.1
4,616,195	+		EFB2_04395	0.84	+0.2
4,616,195	+		EFB2_04395	0.84	-0.7
4,616,195	+		EFB2_04395	0.84	-0.4
4,616,195	+		EFB2_04395	0.84	-1.0
4,616,195	+		EFB2_04395	0.84	+2.9
4,616,195	+		EFB2_04395	0.84	-0.5
4,616,195	+		EFB2_04395	0.84	-1.9
4,616,195	+		EFB2_04395	0.84	-2.8
4,616,195	+		EFB2_04395	0.84	+2.1
4,616,195	+		EFB2_04395	0.84	-2.8
4,616,195	+		EFB2_04395	0.84	-0.0
4,616,195	+		EFB2_04395	0.84	-2.9
4,616,195	+		EFB2_04395	0.84	+1.7
4,616,196	-		EFB2_04395	0.84	+0.5
4,616,196	-		EFB2_04395	0.84	+1.3
4,616,196	-		EFB2_04395	0.84	+3.4
4,616,196	-		EFB2_04395	0.84	+0.1
4,616,196	-		EFB2_04395	0.84	-2.5
4,616,196	-		EFB2_04395	0.84	-0.6
4,616,196	-		EFB2_04395	0.84	+0.2
4,616,196	-		EFB2_04395	0.84	-2.5
4,616,196	-		EFB2_04395	0.84	-0.7
4,616,196	-		EFB2_04395	0.84	-1.8
4,616,212	+		EFB2_04395	0.87	+1.2
4,616,232	+				+0.4
4,616,232	+				-0.2
4,616,232	+				-0.3
4,616,232	+				-0.2
4,616,232	+				+1.0
4,616,232	+				-4.3
4,616,232	+				-0.2
4,616,232	+				-0.5
4,616,232	+				+0.8
4,616,232	+				-1.0
4,616,232	+				+0.7
4,616,232	+				-2.1
4,616,232	+				+0.6
4,616,232	+				-1.0
4,616,232	+				-0.1
4,616,233	-				+0.3
4,616,233	-				-3.7
4,616,233	-				+0.1
4,616,233	-				-0.3
4,616,233	-				-0.1
4,616,233	-				+0.4
4,616,233	-				-2.7
4,616,233	-				+0.4
4,616,233	-				+0.8
4,616,233	-				+0.1
4,616,233	-				-1.5
4,616,233	-				-1.0
4,616,233	-				-3.8
4,616,233	-				+0.0
4,616,233	-				+1.3
4,616,238	+				-1.6
4,616,238	+				-0.3
4,616,238	+				-0.4
4,616,238	+				+0.3
4,616,239	-				+0.6
4,616,239	-				-0.0
4,616,239	-				+1.8
4,616,239	-				-2.8
4,616,254	+				-0.5
4,616,254	+				-1.3
4,616,254	+				-0.9
4,616,255	-				-3.3
4,616,255	-				-0.5
4,616,255	-				+2.2
4,616,285	+				+0.7
4,616,286	-				+0.5
4,616,286	-				-2.0
4,616,288	+				-3.1
4,616,288	+				+0.6
4,616,288	+				-0.2
4,616,288	+				-0.2
4,616,289	-				-0.3
4,616,289	-				-0.8
4,616,289	-				+0.2
4,616,289	-				+1.4
4,616,289	-				-2.7
4,616,289	-				+2.4
4,616,289	-				+0.6
4,616,289	-				-0.0
4,616,289	-				+2.8
4,616,289	-				-2.5
4,616,336	-				+1.0
4,616,336	-				-2.2
4,616,336	-				+0.4
4,616,340	+				-0.9
4,616,340	+				-0.3
4,616,340	+				-3.0
4,616,340	+				+0.1
4,616,340	+				-0.3
4,616,340	+				-0.4
4,616,341	-				+0.3
4,616,341	-				+0.3
4,616,341	-				-1.5
4,616,341	-				-0.5
4,616,341	-				-3.5
4,616,341	-				+1.6
4,616,341	-				+0.4
4,616,341	-				+1.5
4,616,341	-				-1.6
4,616,341	-				+0.1
4,616,341	-				+0.4
4,616,341	-				+0.6
4,616,341	-				+0.5
4,616,342	+				-2.1
4,616,342	+				-0.3
4,616,342	+				-0.4
4,616,342	+				+1.3
4,616,342	+				-0.5
4,616,342	+				-0.7
4,616,342	+				-1.9
4,616,342	+				+0.4
4,616,342	+				+1.5
4,616,342	+				-1.2
4,616,342	+				-0.1
4,616,342	+				-0.1
4,616,343	-				+0.3
4,616,343	-				+0.7
4,616,343	-				-3.1
4,616,343	-				-0.1
4,616,343	-				-1.1
4,616,343	-				-1.1
4,616,343	-				+0.8
4,616,343	-				-1.2
4,616,343	-				+0.4
4,616,343	-				-4.1
4,616,343	-				-0.2
4,616,343	-				-0.0
4,616,343	-				-0.6
4,616,343	-				-0.5
4,616,383	-				+0.6
4,616,383	-				-3.0
4,616,391	+				-0.8
4,616,394	+				+0.9
4,616,395	-				+0.6
4,616,395	-				-1.2
4,616,395	-				-1.7
4,616,425	+				-0.7
4,616,426	-				+0.1
4,616,432	+				+0.6
4,616,432	+				+0.5
4,616,433	-				-3.4
4,616,433	-				-1.5
4,616,453	+				-1.0
4,616,453	+				-0.7
4,616,453	+				-0.2
4,616,454	-				-1.7
4,616,454	-				-3.1
4,616,454	-				-0.6
4,616,454	-				+1.1
4,616,454	-				+1.0
4,616,454	-				+1.5
4,616,469	-				-0.9
4,616,492	+				-1.5
4,616,492	+				-3.7
4,616,492	+				+0.3
4,616,492	+				-0.1
4,616,492	+				+1.0
4,616,492	+				+2.6
4,616,492	+				-0.6
4,616,492	+				-0.2
4,616,492	+				-0.7
4,616,492	+				+1.5
4,616,492	+				+0.3
4,616,492	+				+1.8
4,616,493	-				-0.6
4,616,493	-				-1.8
4,616,493	-				-1.6
4,616,493	-				+1.4
4,616,493	-				+1.0
4,616,493	-				+0.6
4,616,493	-				-0.5
4,616,493	-				+0.4
4,616,493	-				-1.4
4,616,493	-				-1.1
4,616,556	+				-0.0
4,616,556	+				+0.6
4,616,556	+				+1.9
4,616,556	+				-1.0
4,616,556	+				+0.9
4,616,556	+				-0.3
4,616,556	+				-0.6
4,616,556	+				-2.8
4,616,556	+				+0.6
4,616,556	+				+1.5
4,616,557	-				-1.0
4,616,557	-				+0.6
4,616,557	-				+1.4
4,616,557	-				-0.7
4,616,557	-				-1.4
4,616,557	-				-2.0
4,616,557	-				-0.6
4,616,557	-				-0.2
4,616,557	-				+0.1
4,616,557	-				-0.6
4,616,557	-				+1.9
4,616,558	+				+0.2
4,616,558	+				-0.7
4,616,558	+				-0.5
4,616,558	+				+0.8
4,616,558	+				-0.7
4,616,558	+				+0.4
4,616,558	+				+0.0
4,616,558	+				-0.4
4,616,558	+				+1.3
4,616,558	+				-3.9
4,616,558	+				+1.0
4,616,558	+				+0.2
4,616,558	+				+2.6
4,616,558	+				-0.5
4,616,558	+				+0.8
4,616,558	+				+1.1
4,616,558	+				-0.1
4,616,558	+				-1.6
4,616,558	+				-0.3
4,616,558	+				-3.8
4,616,558	+				-2.1
4,616,558	+				-0.1
4,616,558	+				+0.5
4,616,558	+				+1.4
4,616,558	+				+0.4
4,616,558	+				-0.8
4,616,558	+				-1.2
4,616,558	+				+0.7
4,616,559	-				-2.9
4,616,559	-				-0.8
4,616,559	-				+0.2
4,616,559	-				-1.7
4,616,559	-				-1.6
4,616,559	-				-1.1
4,616,559	-				+0.0
4,616,559	-				+1.3
4,616,559	-				-1.7
4,616,559	-				-0.1
4,616,559	-				+0.6
4,616,559	-				+0.9
4,616,559	-				-1.8
4,616,559	-				+0.9
4,616,559	-				-0.8
4,616,559	-				-1.6
4,616,647	+				+0.6
4,616,672	+				-0.2
4,616,672	+				-0.4
4,616,672	+				-2.6
4,616,672	+				-0.1
4,616,672	+				-0.1
4,616,672	+				-2.1
4,616,672	+				+0.3
4,616,672	+				+1.5
4,616,672	+				+0.7
4,616,672	+				-0.0
4,616,672	+				+0.7
4,616,672	+				+0.8
4,616,672	+				-0.7
4,616,672	+				-2.3
4,616,672	+				+1.1
4,616,672	+				+1.7
4,616,673	-				+1.4
4,616,673	-				+0.4
4,616,673	-				+1.1
4,616,673	-				+2.6
4,616,673	-				-0.1
4,616,673	-				+0.6
4,616,673	-				-2.7
4,616,673	-				-1.7
4,616,673	-				+1.1
4,616,673	-				-1.7
4,616,673	-				-1.0
4,616,673	-				+0.3
4,616,673	-				+0.3
4,616,673	-				+0.0
4,616,673	-				+2.0
4,616,673	-				+0.7
4,616,673	-				-0.9
4,616,675	+				-3.4
4,616,675	+				-0.2
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