Strain Fitness in Escherichia fergusonii Becca around EFB2_01976

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,135,531	-		EFB2_01975	0.69	+2.7
2,135,545	+		EFB2_01975	0.70	+0.3
2,135,761	+		EFB2_01975	0.81	-1.2
2,135,777	-		EFB2_01975	0.82	-2.1
2,135,802	-		EFB2_01975	0.84	+3.7
2,136,069	-				+2.4
2,136,073	+				-0.7
2,136,090	+				+1.4
2,136,092	+				+1.1
2,136,104	+				+1.0
2,136,154	+				+0.3
2,136,155	-				-2.7
2,136,155	-				-2.4
2,136,156	+				+0.2
2,136,162	+				-0.3
2,136,162	+				+0.8
2,136,174	+				+2.9
2,136,174	+				+1.7
2,136,175	-				+2.6
2,136,178	-				-2.7
2,136,208	+				+3.1
2,136,208	+				+2.0
2,136,208	+				+1.3
2,136,209	-				-3.1
2,136,209	-				-2.3
2,136,222	-				+1.6
2,136,261	-				+0.8
2,136,261	-				-1.7
2,136,284	-				+1.1
2,136,299	+				+0.2
2,136,299	+				-1.2
2,136,334	-				-1.4
2,136,334	-				-2.1
2,136,346	+		EFB2_01976	0.11	+1.6
2,136,386	+		EFB2_01976	0.14	-0.7
2,136,386	+		EFB2_01976	0.14	-0.3
2,136,386	+		EFB2_01976	0.14	-2.5
2,136,387	-		EFB2_01976	0.14	+0.4
2,136,402	+		EFB2_01976	0.15	+2.8
2,136,402	+		EFB2_01976	0.15	-1.2
2,136,410	+		EFB2_01976	0.16	-0.9
2,136,411	-		EFB2_01976	0.16	-1.2
2,136,411	-		EFB2_01976	0.16	+0.6
2,136,411	-		EFB2_01976	0.16	-0.9
2,136,411	-		EFB2_01976	0.16	+1.4
2,136,411	-		EFB2_01976	0.16	+0.7
2,136,411	-		EFB2_01976	0.16	+0.7
2,136,438	+		EFB2_01976	0.18	+0.8
2,136,438	+		EFB2_01976	0.18	-2.1
2,136,439	-		EFB2_01976	0.19	+0.0
2,136,481	-		EFB2_01976	0.22	+2.2
2,136,492	-		EFB2_01976	0.23	-0.1
2,136,497	+		EFB2_01976	0.23	-0.7
2,136,497	+		EFB2_01976	0.23	+1.7
2,136,507	+		EFB2_01976	0.24	-0.2
2,136,517	-		EFB2_01976	0.25	-0.3
2,136,517	-		EFB2_01976	0.25	+0.7
2,136,517	-		EFB2_01976	0.25	+0.8
2,136,599	+		EFB2_01976	0.32	-2.4
2,136,599	+		EFB2_01976	0.32	+0.4
2,136,719	+		EFB2_01976	0.41	-0.3
2,136,720	-		EFB2_01976	0.42	+1.4
2,136,739	+		EFB2_01976	0.43	-0.5
2,136,739	+		EFB2_01976	0.43	-1.8
2,136,739	+		EFB2_01976	0.43	+2.6
2,136,739	+		EFB2_01976	0.43	-0.1
2,136,739	+		EFB2_01976	0.43	-0.0
2,136,739	+		EFB2_01976	0.43	+1.9
2,136,740	-		EFB2_01976	0.43	-2.0
2,136,740	-		EFB2_01976	0.43	-2.1
2,136,740	-		EFB2_01976	0.43	+2.7
2,136,740	-		EFB2_01976	0.43	+0.6
2,136,776	+		EFB2_01976	0.46	-0.8
2,136,776	+		EFB2_01976	0.46	-0.6
2,136,777	-		EFB2_01976	0.46	+3.3
2,136,777	-		EFB2_01976	0.46	+2.4
2,136,806	+		EFB2_01976	0.49	+0.7
2,136,806	+		EFB2_01976	0.49	-2.6
2,136,806	+		EFB2_01976	0.49	-2.4
2,136,806	+		EFB2_01976	0.49	+1.3
2,136,806	+		EFB2_01976	0.49	-1.4
2,136,807	-		EFB2_01976	0.49	-1.8
2,136,807	-		EFB2_01976	0.49	-2.0
2,136,807	-		EFB2_01976	0.49	+0.7
2,136,807	-		EFB2_01976	0.49	-0.9
2,136,807	-		EFB2_01976	0.49	-1.3
2,136,807	-		EFB2_01976	0.49	-0.1
2,136,807	-		EFB2_01976	0.49	+0.2
2,136,807	-		EFB2_01976	0.49	+0.1
2,136,807	-		EFB2_01976	0.49	-0.4
2,136,828	-		EFB2_01976	0.50	+0.5
2,136,828	-		EFB2_01976	0.50	-0.3
2,136,841	+		EFB2_01976	0.51	-1.8
2,136,841	+		EFB2_01976	0.51	+1.6
2,136,842	-		EFB2_01976	0.52	-1.1
2,136,842	-		EFB2_01976	0.52	+1.6
2,136,878	+		EFB2_01976	0.54	-1.8
2,136,879	-		EFB2_01976	0.55	+1.1
2,136,879	-		EFB2_01976	0.55	-0.3
2,136,879	-		EFB2_01976	0.55	+1.4
2,136,879	-		EFB2_01976	0.55	+0.1
2,136,888	+		EFB2_01976	0.55	+1.4
2,136,888	+		EFB2_01976	0.55	+1.3
2,136,888	+		EFB2_01976	0.55	+0.6
2,136,889	-		EFB2_01976	0.55	+0.1
2,136,889	-		EFB2_01976	0.55	-1.0
2,136,889	-		EFB2_01976	0.55	+1.3
2,136,889	-		EFB2_01976	0.55	+1.3
2,136,923	+		EFB2_01976	0.58	-0.3
2,136,923	+		EFB2_01976	0.58	+1.0
2,136,923	+		EFB2_01976	0.58	+0.4
2,136,923	+		EFB2_01976	0.58	+0.7
2,136,923	+		EFB2_01976	0.58	+1.4
2,136,923	+		EFB2_01976	0.58	+0.3
2,136,923	+		EFB2_01976	0.58	+1.3
2,136,924	-		EFB2_01976	0.58	-1.0
2,136,924	-		EFB2_01976	0.58	-0.0
2,136,924	-		EFB2_01976	0.58	+0.1
2,136,924	-		EFB2_01976	0.58	-3.2
2,136,924	-		EFB2_01976	0.58	+0.7
2,136,924	-		EFB2_01976	0.58	-0.8
2,136,934	-		EFB2_01976	0.59	-0.7
2,136,991	+		EFB2_01976	0.64	-0.7
2,136,997	+		EFB2_01976	0.64	-1.8
2,136,997	+		EFB2_01976	0.64	+0.1
2,136,997	+		EFB2_01976	0.64	-1.3
2,136,997	+		EFB2_01976	0.64	+1.3
2,136,997	+		EFB2_01976	0.64	-3.0
2,136,997	+		EFB2_01976	0.64	-0.1
2,136,997	+		EFB2_01976	0.64	+0.2
2,136,997	+		EFB2_01976	0.64	+0.5
2,136,997	+		EFB2_01976	0.64	-1.6
2,136,997	+		EFB2_01976	0.64	-0.9
2,136,997	+		EFB2_01976	0.64	-0.7
2,136,997	+		EFB2_01976	0.64	-0.7
2,136,997	+		EFB2_01976	0.64	+0.9
2,136,997	+		EFB2_01976	0.64	-2.9
2,136,997	+		EFB2_01976	0.64	-0.6
2,136,997	+		EFB2_01976	0.64	-3.2
2,136,997	+		EFB2_01976	0.64	-1.8
2,136,997	+		EFB2_01976	0.64	-3.4
2,136,997	+		EFB2_01976	0.64	+0.7
2,136,997	+		EFB2_01976	0.64	+0.5
2,136,997	+		EFB2_01976	0.64	+0.2
2,136,997	+		EFB2_01976	0.64	-2.7
2,136,997	+		EFB2_01976	0.64	-2.3
2,136,997	+		EFB2_01976	0.64	+1.7
2,136,997	+		EFB2_01976	0.64	-1.7
2,136,997	+		EFB2_01976	0.64	-1.3
2,136,997	+		EFB2_01976	0.64	-1.3
2,136,997	+		EFB2_01976	0.64	+0.8
2,136,997	+		EFB2_01976	0.64	-2.0
2,136,997	+		EFB2_01976	0.64	-1.3
2,136,997	+		EFB2_01976	0.64	-0.7
2,136,997	+		EFB2_01976	0.64	+1.8
2,136,997	+		EFB2_01976	0.64	+0.3
2,136,997	+		EFB2_01976	0.64	-0.2
2,136,997	+		EFB2_01976	0.64	-2.1
2,136,997	+		EFB2_01976	0.64	-0.5
2,136,998	-		EFB2_01976	0.64	+0.9
2,136,998	-		EFB2_01976	0.64	-0.6
2,136,998	-		EFB2_01976	0.64	+1.5
2,136,998	-		EFB2_01976	0.64	-0.1
2,136,998	-		EFB2_01976	0.64	-2.3
2,136,998	-		EFB2_01976	0.64	-1.4
2,136,998	-		EFB2_01976	0.64	+0.6
2,136,998	-		EFB2_01976	0.64	-0.1
2,136,998	-		EFB2_01976	0.64	-0.3
2,136,998	-		EFB2_01976	0.64	-1.7
2,136,998	-		EFB2_01976	0.64	-3.6
2,136,998	-		EFB2_01976	0.64	-0.6
2,136,998	-		EFB2_01976	0.64	+0.3
2,136,998	-		EFB2_01976	0.64	-1.4
2,136,998	-		EFB2_01976	0.64	-2.0
2,136,998	-		EFB2_01976	0.64	+3.0
2,136,998	-		EFB2_01976	0.64	-0.2
2,136,998	-		EFB2_01976	0.64	+1.6
2,136,998	-		EFB2_01976	0.64	-1.0
2,136,998	-		EFB2_01976	0.64	+1.8
2,136,998	-		EFB2_01976	0.64	+1.6
2,136,998	-		EFB2_01976	0.64	-0.6
2,136,998	-		EFB2_01976	0.64	-1.9
2,137,113	+		EFB2_01976	0.74	-0.7
2,137,113	+		EFB2_01976	0.74	+3.1
2,137,113	+		EFB2_01976	0.74	+1.4
2,137,157	+		EFB2_01976	0.77	+1.1
2,137,157	+		EFB2_01976	0.77	-0.8
2,137,158	-		EFB2_01976	0.77	-0.1
2,137,158	-		EFB2_01976	0.77	-2.7
2,137,158	-		EFB2_01976	0.77	-1.3
2,137,158	-		EFB2_01976	0.77	+0.0
2,137,160	+		EFB2_01976	0.78	+2.8
2,137,160	+		EFB2_01976	0.78	-1.0
2,137,160	+		EFB2_01976	0.78	+0.1
2,137,160	+		EFB2_01976	0.78	+0.2
2,137,161	-		EFB2_01976	0.78	+0.5
2,137,161	-		EFB2_01976	0.78	+1.5
2,137,161	-		EFB2_01976	0.78	-1.9
2,137,161	-		EFB2_01976	0.78	-2.9
2,137,161	-		EFB2_01976	0.78	-1.6
2,137,161	-		EFB2_01976	0.78	-1.4
2,137,178	+		EFB2_01976	0.79	+1.8
2,137,178	+		EFB2_01976	0.79	-2.0
2,137,179	-		EFB2_01976	0.79	+0.7
2,137,182	+		EFB2_01976	0.79	-1.6
2,137,182	+		EFB2_01976	0.79	+0.8
2,137,182	+		EFB2_01976	0.79	+0.4
2,137,182	+		EFB2_01976	0.79	-1.6
2,137,182	+		EFB2_01976	0.79	+2.3
2,137,182	+		EFB2_01976	0.79	-2.3
2,137,182	+		EFB2_01976	0.79	+1.5
2,137,183	-		EFB2_01976	0.79	-1.1
2,137,183	-		EFB2_01976	0.79	-2.2
2,137,183	-		EFB2_01976	0.79	-0.8
2,137,183	-		EFB2_01976	0.79	-0.1
2,137,183	-		EFB2_01976	0.79	+2.0
2,137,183	-		EFB2_01976	0.79	+0.8
2,137,183	-		EFB2_01976	0.79	-0.1
2,137,183	-		EFB2_01976	0.79	+0.7
2,137,260	-		EFB2_01976	0.86	+0.5
2,137,295	+		EFB2_01976	0.89	-1.4
2,137,342	+				-2.6
2,137,342	+				-2.1
2,137,343	-				+1.1
2,137,343	-				-0.1
2,137,343	-				+0.2
2,137,343	-				-3.2
2,137,343	-				+0.2
2,137,343	-				-1.7
2,137,343	-				-1.7
2,137,344	+				-2.4
2,137,345	-				+1.5
2,137,345	-				-0.1
2,137,369	+				-0.7
2,137,369	+				+1.8
2,137,369	+				-2.2
2,137,369	+				+1.1
2,137,369	+				-0.3
2,137,369	+				+2.8
2,137,369	+				+0.2
2,137,369	+				-1.8
2,137,369	+				+1.5
2,137,369	+				+0.9
2,137,369	+				-0.3
2,137,369	+				-0.9
2,137,370	-				-1.2
2,137,370	-				+0.5
2,137,370	-				-1.7
2,137,370	-				-2.3
2,137,370	-				-1.0
2,137,370	-				-0.5
2,137,370	-				+1.7
2,137,370	-				-0.3
2,137,370	-				-0.1
2,137,370	-				+0.5
2,137,370	-				-2.2
2,137,370	-				-2.0
2,137,370	-				-0.4
2,137,370	-				-0.1
2,137,370	-				-1.3
2,137,370	-				-1.3
2,137,370	-				+2.1
2,137,370	-				-0.3
2,137,370	-				+1.3
2,137,370	-				+0.1
2,137,370	-				+0.0
2,137,370	-				-2.6
2,137,370	-				-1.3
2,137,386	+				+1.7
2,137,387	-				-0.4
2,137,387	-				-2.7
2,137,396	-				-0.0
2,137,396	-				-0.1
2,137,433	+				-1.4
2,137,434	-				+0.9
2,137,434	-				+2.0
2,137,449	+				-2.2
2,137,449	+				-1.1
2,137,449	+				-1.8
2,137,449	+				-0.9
2,137,450	-				-0.6
2,137,450	-				+1.1
2,137,450	-				-1.2
2,137,450	-				-1.1
2,137,450	-				+0.6
2,137,461	+				-1.8
2,137,461	+				+2.3
2,137,461	+				+1.6
2,137,461	+				-2.7
2,137,461	+				-1.8
2,137,462	-				+1.1
2,137,462	-				-0.1
2,137,462	-				+0.2
2,137,462	-				-2.9
2,137,462	-				-0.1
2,137,462	-				+0.4
2,137,462	-				+0.6
2,137,462	-				+0.8
2,137,462	-				-2.0
2,137,462	-				-0.7
2,137,465	+				-1.8
2,137,465	+				-0.1
2,137,465	+				+0.4
2,137,465	+				+0.7
2,137,465	+				-1.7
2,137,465	+				-2.6
2,137,465	+				+2.5
2,137,466	-				+0.4
2,137,466	-				+0.2
2,137,466	-				+0.0
2,137,466	-				+0.4
2,137,466	-				+0.6
2,137,466	-				-3.5
2,137,466	-				-0.5
2,137,466	-				+1.6
2,137,466	-				+0.6
2,137,466	-				-0.9
2,137,478	-				+1.5
2,137,478	-				-0.4
2,137,478	-				+1.6
2,137,482	+				+0.5
2,137,483	-				-0.0
2,137,501	+				-2.6
2,137,501	+				+1.3
2,137,501	+				-1.7
2,137,502	-				+2.5
2,137,502	-				-0.6
2,137,502	-				+0.8
2,137,502	-				-1.2
2,137,507	+				-1.7
2,137,594	+				+2.0
2,137,626	+				-1.3
2,137,627	-				-1.6
2,137,627	-				+0.6
2,137,671	-				-1.2
2,137,671	-				-3.1
2,137,689	+				-1.9
2,137,690	-				-1.8
2,137,690	-				-1.7
2,137,776	-				+0.8
2,137,781	+				-1.7
2,137,781	+				-1.1
2,137,781	+				+1.8
2,137,832	-				+0.5
2,137,873	+				-0.6
2,137,873	+				-1.1
2,137,873	+				+0.9
2,137,873	+				+1.0
2,137,873	+				-0.9
2,137,874	-				-2.3
2,137,874	-				-0.6
2,137,874	-				+2.9
2,137,874	-				+1.9
2,137,877	+				+0.3
2,137,877	+				+0.2
2,137,878	-				+0.2
2,137,888	+				-0.4
2,137,889	-				-2.4
2,137,944	+				-0.1
2,137,945	-				-0.6
2,137,992	-				+1.4
2,138,101	+				-1.6
2,138,116	+				-2.7
2,138,116	+				+2.8
2,138,117	-				+1.4
2,138,117	-				-0.8
2,138,120	+				+0.3
2,138,120	+				-0.3
2,138,121	-				+0.5
2,138,121	-				-0.7
2,138,121	-				-0.2
2,138,157	+				+1.4
2,138,158	-				-1.7
2,138,158	-				-2.1
2,138,160	+				+1.0
2,138,181	-				+2.3
2,138,207	+				+0.2
2,138,207	+				+3.2
2,138,207	+				+0.3
2,138,220	-				+1.3
2,138,220	-				+2.3
2,138,224	+				+0.1
2,138,225	-				+1.2
2,138,233	+				-1.8
2,138,234	-				-0.1
2,138,254	+				-0.7
2,138,333	+				-1.5
2,138,333	+				+1.3
2,138,334	-				-0.0
2,138,336	+				+0.4
2,138,336	+				-1.2
2,138,336	+				+2.4
2,138,337	-				-3.0
2,138,337	-				-0.3
2,138,428	+		EFB2_01977	0.23	-0.0
2,138,429	-		EFB2_01977	0.23	+0.3
2,138,429	-		EFB2_01977	0.23	-0.1