Strain Fitness in Escherichia fergusonii Becca around EFB2_01910

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,032,309	+		EFB2_01909	0.12	-0.2
2,032,313	+		EFB2_01909	0.13	-2.4
2,032,313	+		EFB2_01909	0.13	+1.3
2,032,313	+		EFB2_01909	0.13	-1.0
2,032,313	+		EFB2_01909	0.13	+1.9
2,032,313	+		EFB2_01909	0.13	+1.4
2,032,313	+		EFB2_01909	0.13	+0.1
2,032,313	+		EFB2_01909	0.13	-0.1
2,032,313	+		EFB2_01909	0.13	-3.9
2,032,313	+		EFB2_01909	0.13	-1.7
2,032,313	+		EFB2_01909	0.13	-1.5
2,032,313	+		EFB2_01909	0.13	+0.9
2,032,313	+		EFB2_01909	0.13	+1.7
2,032,313	+		EFB2_01909	0.13	-0.4
2,032,313	+		EFB2_01909	0.13	+1.7
2,032,313	+		EFB2_01909	0.13	-0.2
2,032,313	+		EFB2_01909	0.13	+0.3
2,032,313	+		EFB2_01909	0.13	+0.4
2,032,313	+		EFB2_01909	0.13	+1.2
2,032,313	+		EFB2_01909	0.13	+0.1
2,032,313	+		EFB2_01909	0.13	+1.4
2,032,313	+		EFB2_01909	0.13	-1.9
2,032,313	+		EFB2_01909	0.13	-0.9
2,032,313	+		EFB2_01909	0.13	-0.8
2,032,313	+		EFB2_01909	0.13	-0.8
2,032,313	+		EFB2_01909	0.13	-1.3
2,032,313	+		EFB2_01909	0.13	+0.7
2,032,313	+		EFB2_01909	0.13	+2.6
2,032,313	+		EFB2_01909	0.13	+0.1
2,032,313	+		EFB2_01909	0.13	-1.3
2,032,313	+		EFB2_01909	0.13	-0.8
2,032,313	+		EFB2_01909	0.13	+0.6
2,032,314	-		EFB2_01909	0.13	+1.8
2,032,314	-		EFB2_01909	0.13	+0.3
2,032,314	-		EFB2_01909	0.13	-0.4
2,032,314	-		EFB2_01909	0.13	-0.4
2,032,314	-		EFB2_01909	0.13	-0.7
2,032,314	-		EFB2_01909	0.13	+1.3
2,032,314	-		EFB2_01909	0.13	+0.8
2,032,314	-		EFB2_01909	0.13	+0.8
2,032,314	-		EFB2_01909	0.13	-0.2
2,032,314	-		EFB2_01909	0.13	-1.9
2,032,314	-		EFB2_01909	0.13	-2.6
2,032,314	-		EFB2_01909	0.13	-0.4
2,032,314	-		EFB2_01909	0.13	+0.4
2,032,314	-		EFB2_01909	0.13	-1.1
2,032,314	-		EFB2_01909	0.13	-1.1
2,032,314	-		EFB2_01909	0.13	+0.4
2,032,314	-		EFB2_01909	0.13	-3.7
2,032,314	-		EFB2_01909	0.13	-0.1
2,032,314	-		EFB2_01909	0.13	-1.3
2,032,314	-		EFB2_01909	0.13	+0.8
2,032,314	-		EFB2_01909	0.13	+1.0
2,032,314	-		EFB2_01909	0.13	+1.3
2,032,314	-		EFB2_01909	0.13	+1.3
2,032,314	-		EFB2_01909	0.13	+0.8
2,032,314	-		EFB2_01909	0.13	-2.5
2,032,314	-		EFB2_01909	0.13	-1.0
2,032,314	-		EFB2_01909	0.13	+1.4
2,032,314	-		EFB2_01909	0.13	-0.1
2,032,314	-		EFB2_01909	0.13	+2.6
2,032,314	-		EFB2_01909	0.13	-0.6
2,032,314	-		EFB2_01909	0.13	+0.9
2,032,314	-		EFB2_01909	0.13	+0.3
2,032,314	-		EFB2_01909	0.13	-1.9
2,032,314	-		EFB2_01909	0.13	-0.1
2,032,314	-		EFB2_01909	0.13	-1.7
2,032,314	-		EFB2_01909	0.13	-1.3
2,032,337	-		EFB2_01909	0.15	+1.7
2,032,352	-		EFB2_01909	0.16	+0.3
2,032,360	+		EFB2_01909	0.17	-0.8
2,032,360	+		EFB2_01909	0.17	+0.7
2,032,421	+		EFB2_01909	0.22	-1.8
2,032,421	+		EFB2_01909	0.22	-2.4
2,032,421	+		EFB2_01909	0.22	-0.7
2,032,422	-		EFB2_01909	0.22	-2.3
2,032,422	-		EFB2_01909	0.22	-1.6
2,032,422	-		EFB2_01909	0.22	+0.0
2,032,422	-		EFB2_01909	0.22	-0.8
2,032,422	-		EFB2_01909	0.22	-2.0
2,032,486	+		EFB2_01909	0.28	+0.8
2,032,487	-		EFB2_01909	0.28	+0.6
2,032,487	-		EFB2_01909	0.28	-1.9
2,032,559	+		EFB2_01909	0.34	-0.5
2,032,559	+		EFB2_01909	0.34	-0.8
2,032,559	+		EFB2_01909	0.34	-0.2
2,032,559	+		EFB2_01909	0.34	-1.6
2,032,560	-		EFB2_01909	0.34	+1.0
2,032,580	+		EFB2_01909	0.36	-1.0
2,032,580	+		EFB2_01909	0.36	+1.8
2,032,580	+		EFB2_01909	0.36	+1.0
2,032,580	+		EFB2_01909	0.36	-1.7
2,032,580	+		EFB2_01909	0.36	-2.3
2,032,581	-		EFB2_01909	0.36	+0.2
2,032,581	-		EFB2_01909	0.36	-0.4
2,032,581	-		EFB2_01909	0.36	-1.4
2,032,581	-		EFB2_01909	0.36	-0.5
2,032,581	-		EFB2_01909	0.36	+1.9
2,032,581	-		EFB2_01909	0.36	-2.0
2,032,677	+		EFB2_01909	0.45	+0.6
2,032,699	-		EFB2_01909	0.47	+2.2
2,032,722	+		EFB2_01909	0.49	-0.6
2,032,722	+		EFB2_01909	0.49	-0.3
2,032,722	+		EFB2_01909	0.49	-0.6
2,032,723	-		EFB2_01909	0.49	+0.2
2,032,723	-		EFB2_01909	0.49	-2.3
2,032,725	+		EFB2_01909	0.49	-1.2
2,032,726	-		EFB2_01909	0.49	-1.7
2,032,755	-		EFB2_01909	0.52	-1.7
2,032,755	-		EFB2_01909	0.52	+0.9
2,032,764	+		EFB2_01909	0.52	-0.6
2,032,764	+		EFB2_01909	0.52	+0.1
2,032,764	+		EFB2_01909	0.52	+0.4
2,032,764	+		EFB2_01909	0.52	-0.3
2,032,764	+		EFB2_01909	0.52	+1.3
2,032,764	+		EFB2_01909	0.52	-0.1
2,032,764	+		EFB2_01909	0.52	-1.1
2,032,764	+		EFB2_01909	0.52	+0.5
2,032,764	+		EFB2_01909	0.52	+0.8
2,032,764	+		EFB2_01909	0.52	+0.7
2,032,764	+		EFB2_01909	0.52	+1.0
2,032,764	+		EFB2_01909	0.52	-0.6
2,032,765	-		EFB2_01909	0.53	-1.4
2,032,765	-		EFB2_01909	0.53	+2.0
2,032,765	-		EFB2_01909	0.53	-2.5
2,032,765	-		EFB2_01909	0.53	-0.4
2,032,765	-		EFB2_01909	0.53	+1.5
2,032,765	-		EFB2_01909	0.53	+0.3
2,032,765	-		EFB2_01909	0.53	+1.0
2,032,765	-		EFB2_01909	0.53	+0.0
2,032,765	-		EFB2_01909	0.53	-2.7
2,032,785	+		EFB2_01909	0.54	+1.6
2,032,785	+		EFB2_01909	0.54	+0.7
2,032,785	+		EFB2_01909	0.54	-1.0
2,032,898	+		EFB2_01909	0.64	+1.3
2,032,899	-		EFB2_01909	0.64	-0.9
2,032,899	-		EFB2_01909	0.64	-2.4
2,032,899	-		EFB2_01909	0.64	+1.0
2,032,904	+		EFB2_01909	0.65	-1.5
2,032,904	+		EFB2_01909	0.65	-0.6
2,032,904	+		EFB2_01909	0.65	+0.3
2,032,904	+		EFB2_01909	0.65	+1.0
2,032,904	+		EFB2_01909	0.65	-2.5
2,032,904	+		EFB2_01909	0.65	-2.6
2,032,904	+		EFB2_01909	0.65	+1.8
2,032,905	-		EFB2_01909	0.65	-2.1
2,032,936	+		EFB2_01909	0.68	+0.5
2,032,936	+		EFB2_01909	0.68	-0.5
2,032,936	+		EFB2_01909	0.68	-2.8
2,032,937	-		EFB2_01909	0.68	-0.6
2,032,951	-		EFB2_01909	0.69	-1.0
2,032,970	+		EFB2_01909	0.71	+1.5
2,033,036	+		EFB2_01909	0.76	+0.7
2,033,036	+		EFB2_01909	0.76	-0.6
2,033,036	+		EFB2_01909	0.76	+2.3
2,033,036	+		EFB2_01909	0.76	+1.2
2,033,036	+		EFB2_01909	0.76	+0.8
2,033,036	+		EFB2_01909	0.76	+0.4
2,033,036	+		EFB2_01909	0.76	-0.6
2,033,036	+		EFB2_01909	0.76	+2.8
2,033,036	+		EFB2_01909	0.76	-1.6
2,033,037	-		EFB2_01909	0.77	+0.1
2,033,037	-		EFB2_01909	0.77	+0.3
2,033,037	-		EFB2_01909	0.77	-0.0
2,033,037	-		EFB2_01909	0.77	-1.3
2,033,037	-		EFB2_01909	0.77	+0.8
2,033,037	-		EFB2_01909	0.77	+0.3
2,033,037	-		EFB2_01909	0.77	+0.9
2,033,037	-		EFB2_01909	0.77	+0.4
2,033,037	-		EFB2_01909	0.77	+0.6
2,033,037	-		EFB2_01909	0.77	-2.0
2,033,088	-		EFB2_01909	0.81	-0.3
2,033,088	-		EFB2_01909	0.81	-0.3
2,033,110	+		EFB2_01909	0.83	-0.4
2,033,110	+		EFB2_01909	0.83	+2.6
2,033,110	+		EFB2_01909	0.83	+0.5
2,033,110	+		EFB2_01909	0.83	-1.7
2,033,110	+		EFB2_01909	0.83	+0.4
2,033,110	+		EFB2_01909	0.83	+1.7
2,033,110	+		EFB2_01909	0.83	+0.9
2,033,110	+		EFB2_01909	0.83	+0.7
2,033,110	+		EFB2_01909	0.83	-3.0
2,033,110	+		EFB2_01909	0.83	-1.2
2,033,110	+		EFB2_01909	0.83	-0.6
2,033,110	+		EFB2_01909	0.83	-1.1
2,033,110	+		EFB2_01909	0.83	-0.5
2,033,110	+		EFB2_01909	0.83	-2.3
2,033,110	+		EFB2_01909	0.83	-0.3
2,033,110	+		EFB2_01909	0.83	-0.0
2,033,111	-		EFB2_01909	0.83	-0.3
2,033,111	-		EFB2_01909	0.83	-0.4
2,033,111	-		EFB2_01909	0.83	+1.9
2,033,111	-		EFB2_01909	0.83	+0.5
2,033,111	-		EFB2_01909	0.83	+0.3
2,033,111	-		EFB2_01909	0.83	-1.5
2,033,111	-		EFB2_01909	0.83	+1.0
2,033,111	-		EFB2_01909	0.83	+3.2
2,033,111	-		EFB2_01909	0.83	-2.1
2,033,111	-		EFB2_01909	0.83	-0.3
2,033,111	-		EFB2_01909	0.83	-1.9
2,033,188	+		EFB2_01909	0.90	+2.1
2,033,188	+		EFB2_01909	0.90	+0.5
2,033,188	+		EFB2_01909	0.90	-2.2
2,033,188	+		EFB2_01909	0.90	+1.0
2,033,189	-				-1.0
2,033,189	-				-1.0
2,033,203	+				+1.7
2,033,204	-				-0.5
2,033,204	-				+0.4
2,033,204	-				-2.6
2,033,206	+				-1.7
2,033,278	+				+0.1
2,033,278	+				+1.4
2,033,278	+				-0.6
2,033,278	+				-0.8
2,033,278	+				-2.7
2,033,278	+				-0.1
2,033,278	+				-1.6
2,033,278	+				+1.7
2,033,278	+				+0.2
2,033,278	+				-0.2
2,033,278	+				-3.2
2,033,278	+				+0.5
2,033,279	-				-0.8
2,033,279	-				-1.0
2,033,279	-				-1.6
2,033,343	+				+2.4
2,033,343	+				-1.5
2,033,343	+				+0.0
2,033,343	+				-1.9
2,033,343	+				-2.1
2,033,343	+				-3.2
2,033,343	+				+0.3
2,033,343	+				-3.0
2,033,343	+				-1.8
2,033,343	+				-1.1
2,033,344	-				-2.0
2,033,344	-				-1.8
2,033,344	-				-0.3
2,033,344	-				+0.1
2,033,344	-				+0.7
2,033,344	-				+1.9
2,033,344	-				-1.8
2,033,344	-				-0.8
2,033,344	-				+1.4
2,033,344	-				-1.4
2,033,344	-				-2.5
2,033,344	-				+2.9
2,033,344	-				+0.7
2,033,344	-				+1.2
2,033,344	-				+0.2
2,033,344	-				-0.8
2,033,344	-				-0.7
2,033,344	-				+0.1
2,033,347	+				-0.2
2,033,347	+				-1.0
2,033,347	+				+0.3
2,033,347	+				+1.3
2,033,347	+				+1.1
2,033,347	+				+1.9
2,033,347	+				+1.3
2,033,347	+				-2.4
2,033,347	+				-0.3
2,033,347	+				+0.8
2,033,347	+				-0.7
2,033,347	+				+0.3
2,033,347	+				-0.0
2,033,347	+				-0.3
2,033,347	+				-0.0
2,033,347	+				+0.0
2,033,347	+				-0.6
2,033,347	+				+1.9
2,033,347	+				+0.7
2,033,347	+				-0.5
2,033,347	+				-2.4
2,033,347	+				+0.2
2,033,347	+				+1.2
2,033,347	+				+0.9
2,033,347	+				-1.4
2,033,348	-				-2.5
2,033,348	-				+0.5
2,033,348	-				-0.2
2,033,348	-				+1.5
2,033,348	-				-2.0
2,033,348	-				+1.4
2,033,348	-				+0.7
2,033,348	-				-0.5
2,033,348	-				-1.5
2,033,348	-				-0.8
2,033,348	-				-2.2
2,033,348	-				-2.0
2,033,348	-				+0.3
2,033,348	-				+0.3
2,033,348	-				+2.5
2,033,348	-				-0.6
2,033,348	-				+2.2
2,033,348	-				-1.2
2,033,348	-				-0.6
2,033,348	-				-1.9
2,033,348	-				+2.8
2,033,348	-				+2.0
2,033,348	-				-2.1
2,033,348	-				+0.9
2,033,348	-				+0.1
2,033,348	-				+1.4
2,033,348	-				+0.0
2,033,348	-				-0.9
2,033,348	-				-0.6
2,033,348	-				+0.4
2,033,348	-				-1.5
2,033,348	-				+0.8
2,033,367	+				+1.1
2,033,367	+				+0.6
2,033,368	-				-3.1
2,033,368	-				-1.4
2,033,368	-				-1.1
2,033,368	-				+0.3
2,033,368	-				+1.6
2,033,368	-				+0.5
2,033,390	+				+0.1
2,033,390	+				-3.5
2,033,390	+				-3.8
2,033,390	+				-1.5
2,033,391	-				-0.4
2,033,391	-				-2.2
2,033,391	-				+0.2
2,033,408	+				+0.0
2,033,408	+				+0.8
2,033,408	+				-3.8
2,033,453	+		EFB2_01910	0.12	-1.5
2,033,453	+		EFB2_01910	0.12	+0.5
2,033,461	+		EFB2_01910	0.13	-1.0
2,033,461	+		EFB2_01910	0.13	-2.8
2,033,461	+		EFB2_01910	0.13	-2.6
2,033,461	+		EFB2_01910	0.13	+0.6
2,033,462	-		EFB2_01910	0.13	+0.9
2,033,462	-		EFB2_01910	0.13	-0.2
2,033,462	-		EFB2_01910	0.13	-1.2
2,033,495	+		EFB2_01910	0.16	-0.5
2,033,495	+		EFB2_01910	0.16	-0.1
2,033,496	-		EFB2_01910	0.16	+0.5
2,033,499	+		EFB2_01910	0.16	+0.7
2,033,499	+		EFB2_01910	0.16	+0.9
2,033,499	+		EFB2_01910	0.16	-0.5
2,033,499	+		EFB2_01910	0.16	+0.2
2,033,499	+		EFB2_01910	0.16	+0.4
2,033,499	+		EFB2_01910	0.16	+2.1
2,033,499	+		EFB2_01910	0.16	-0.6
2,033,499	+		EFB2_01910	0.16	+1.2
2,033,499	+		EFB2_01910	0.16	+0.8
2,033,499	+		EFB2_01910	0.16	-0.0
2,033,499	+		EFB2_01910	0.16	+1.3
2,033,499	+		EFB2_01910	0.16	-0.7
2,033,499	+		EFB2_01910	0.16	-2.0
2,033,499	+		EFB2_01910	0.16	+1.3
2,033,499	+		EFB2_01910	0.16	-0.5
2,033,499	+		EFB2_01910	0.16	-0.7
2,033,499	+		EFB2_01910	0.16	-2.7
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