Strain Fitness in Escherichia fergusonii Becca around EFB2_01874

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,986,166	+				+0.3
1,986,167	-				+1.1
1,986,205	+				+0.2
1,986,205	+				+0.2
1,986,205	+				-0.2
1,986,206	-				+1.7
1,986,206	-				+0.7
1,986,206	-				+1.4
1,986,218	+		EFB2_01873	0.11	+2.4
1,986,219	-		EFB2_01873	0.11	-1.9
1,986,219	-		EFB2_01873	0.11	+0.6
1,986,248	+		EFB2_01873	0.13	-1.5
1,986,248	+		EFB2_01873	0.13	-2.1
1,986,248	+		EFB2_01873	0.13	+1.7
1,986,249	-		EFB2_01873	0.14	-1.8
1,986,250	+		EFB2_01873	0.14	-0.5
1,986,250	+		EFB2_01873	0.14	-0.1
1,986,288	-		EFB2_01873	0.17	-1.1
1,986,296	+		EFB2_01873	0.18	+1.0
1,986,296	+		EFB2_01873	0.18	+0.0
1,986,296	+		EFB2_01873	0.18	+1.7
1,986,296	+		EFB2_01873	0.18	-0.3
1,986,296	+		EFB2_01873	0.18	-1.7
1,986,296	+		EFB2_01873	0.18	+2.1
1,986,296	+		EFB2_01873	0.18	+2.3
1,986,296	+		EFB2_01873	0.18	-1.1
1,986,297	-		EFB2_01873	0.18	-0.1
1,986,298	+		EFB2_01873	0.18	-0.1
1,986,298	+		EFB2_01873	0.18	-0.1
1,986,298	+		EFB2_01873	0.18	+1.1
1,986,298	+		EFB2_01873	0.18	+1.6
1,986,298	+		EFB2_01873	0.18	+0.1
1,986,298	+		EFB2_01873	0.18	-2.3
1,986,298	+		EFB2_01873	0.18	+1.3
1,986,298	+		EFB2_01873	0.18	+1.3
1,986,298	+		EFB2_01873	0.18	+1.7
1,986,298	+		EFB2_01873	0.18	+0.0
1,986,299	-		EFB2_01873	0.18	+1.7
1,986,299	-		EFB2_01873	0.18	+0.9
1,986,299	-		EFB2_01873	0.18	+1.0
1,986,299	-		EFB2_01873	0.18	-1.0
1,986,299	-		EFB2_01873	0.18	+2.2
1,986,299	-		EFB2_01873	0.18	-1.8
1,986,330	-		EFB2_01873	0.22	+0.5
1,986,330	-		EFB2_01873	0.22	-0.1
1,986,330	-		EFB2_01873	0.22	-1.4
1,986,349	-		EFB2_01873	0.23	+0.8
1,986,377	+		EFB2_01873	0.26	-1.1
1,986,564	-		EFB2_01873	0.44	+0.6
1,986,564	-		EFB2_01873	0.44	-2.4
1,986,564	-		EFB2_01873	0.44	+0.1
1,986,583	+		EFB2_01873	0.46	+2.4
1,986,583	+		EFB2_01873	0.46	-1.5
1,986,583	+		EFB2_01873	0.46	-1.3
1,986,796	+		EFB2_01873	0.67	-0.3
1,986,796	+		EFB2_01873	0.67	+0.4
1,986,796	+		EFB2_01873	0.67	+1.7
1,986,797	-		EFB2_01873	0.67	-0.8
1,986,802	+		EFB2_01873	0.68	-2.0
1,986,803	-		EFB2_01873	0.68	-1.0
1,986,803	-		EFB2_01873	0.68	+0.6
1,986,803	-		EFB2_01873	0.68	-2.6
1,986,803	-		EFB2_01873	0.68	-1.1
1,986,824	+		EFB2_01873	0.70	-1.6
1,986,824	+		EFB2_01873	0.70	-0.5
1,986,824	+		EFB2_01873	0.70	-1.0
1,986,824	+		EFB2_01873	0.70	-3.3
1,986,825	-		EFB2_01873	0.70	-0.4
1,986,825	-		EFB2_01873	0.70	+0.6
1,986,842	+		EFB2_01873	0.72	-0.9
1,986,842	+		EFB2_01873	0.72	+0.2
1,986,842	+		EFB2_01873	0.72	+0.9
1,986,842	+		EFB2_01873	0.72	-1.2
1,986,842	+		EFB2_01873	0.72	-2.8
1,986,842	+		EFB2_01873	0.72	+0.7
1,986,843	-		EFB2_01873	0.72	+0.6
1,986,843	-		EFB2_01873	0.72	-0.4
1,986,843	-		EFB2_01873	0.72	-0.4
1,986,843	-		EFB2_01873	0.72	+0.6
1,986,843	-		EFB2_01873	0.72	-1.6
1,986,852	+		EFB2_01873	0.73	+0.9
1,987,034	+				+0.8
1,987,034	+				+0.7
1,987,034	+				-1.6
1,987,034	+				-0.7
1,987,035	-				-0.6
1,987,035	-				+0.1
1,987,035	-				-0.5
1,987,103	+				+1.2
1,987,103	+				+0.7
1,987,103	+				-0.6
1,987,103	+				-2.6
1,987,103	+				+0.3
1,987,104	-				-2.9
1,987,104	-				-1.8
1,987,104	-				-1.2
1,987,104	-				-2.1
1,987,104	-				-2.2
1,987,104	-				+2.2
1,987,104	-				+0.8
1,987,194	+				+2.2
1,987,194	+				+2.2
1,987,194	+				-0.1
1,987,194	+				+0.7
1,987,194	+				-0.4
1,987,195	-				-2.6
1,987,195	-				+1.4
1,987,195	-				-1.8
1,987,195	-				-1.9
1,987,195	-				-1.4
1,987,195	-				+1.4
1,987,196	+				-1.1
1,987,196	+				+0.7
1,987,196	+				+0.2
1,987,196	+				+1.1
1,987,197	-				+1.2
1,987,197	-				+0.2
1,987,197	-				+1.3
1,987,197	-				-2.0
1,987,197	-				+0.8
1,987,197	-				+0.2
1,987,197	-				+0.2
1,987,229	+		EFB2_01874	0.12	-1.5
1,987,229	+		EFB2_01874	0.12	-2.7
1,987,230	-		EFB2_01874	0.13	-0.6
1,987,246	+		EFB2_01874	0.15	+1.5
1,987,246	+		EFB2_01874	0.15	-1.9
1,987,246	+		EFB2_01874	0.15	-0.6
1,987,246	+		EFB2_01874	0.15	-2.9
1,987,246	+		EFB2_01874	0.15	+3.7
1,987,246	+		EFB2_01874	0.15	+0.4
1,987,246	+		EFB2_01874	0.15	+0.2
1,987,246	+		EFB2_01874	0.15	+0.6
1,987,246	+		EFB2_01874	0.15	-1.0
1,987,246	+		EFB2_01874	0.15	+0.5
1,987,246	+		EFB2_01874	0.15	+1.2
1,987,246	+		EFB2_01874	0.15	+0.4
1,987,246	+		EFB2_01874	0.15	+0.7
1,987,246	+		EFB2_01874	0.15	-2.3
1,987,246	+		EFB2_01874	0.15	-2.0
1,987,246	+		EFB2_01874	0.15	+0.8
1,987,246	+		EFB2_01874	0.15	+0.2
1,987,246	+		EFB2_01874	0.15	-2.8
1,987,246	+		EFB2_01874	0.15	-0.4
1,987,246	+		EFB2_01874	0.15	-0.8
1,987,247	-		EFB2_01874	0.15	-0.1
1,987,247	-		EFB2_01874	0.15	-0.3
1,987,247	-		EFB2_01874	0.15	-2.9
1,987,247	-		EFB2_01874	0.15	+0.9
1,987,247	-		EFB2_01874	0.15	+0.5
1,987,247	-		EFB2_01874	0.15	-3.0
1,987,247	-		EFB2_01874	0.15	+1.5
1,987,247	-		EFB2_01874	0.15	+0.1
1,987,247	-		EFB2_01874	0.15	-0.1
1,987,247	-		EFB2_01874	0.15	-3.1
1,987,247	-		EFB2_01874	0.15	+0.1
1,987,247	-		EFB2_01874	0.15	-2.2
1,987,247	-		EFB2_01874	0.15	+1.0
1,987,247	-		EFB2_01874	0.15	+1.6
1,987,247	-		EFB2_01874	0.15	-2.6
1,987,247	-		EFB2_01874	0.15	-0.1
1,987,247	-		EFB2_01874	0.15	+0.2
1,987,248	+		EFB2_01874	0.15	+1.2
1,987,248	+		EFB2_01874	0.15	+0.7
1,987,248	+		EFB2_01874	0.15	-0.1
1,987,248	+		EFB2_01874	0.15	-2.0
1,987,248	+		EFB2_01874	0.15	+0.4
1,987,248	+		EFB2_01874	0.15	+0.3
1,987,248	+		EFB2_01874	0.15	+0.2
1,987,248	+		EFB2_01874	0.15	+1.5
1,987,248	+		EFB2_01874	0.15	-1.3
1,987,248	+		EFB2_01874	0.15	+1.0
1,987,248	+		EFB2_01874	0.15	+0.8
1,987,248	+		EFB2_01874	0.15	-1.9
1,987,248	+		EFB2_01874	0.15	+0.6
1,987,248	+		EFB2_01874	0.15	+0.5
1,987,248	+		EFB2_01874	0.15	+0.2
1,987,249	-		EFB2_01874	0.15	-1.6
1,987,249	-		EFB2_01874	0.15	+0.1
1,987,249	-		EFB2_01874	0.15	+0.1
1,987,249	-		EFB2_01874	0.15	+1.2
1,987,249	-		EFB2_01874	0.15	+0.4
1,987,249	-		EFB2_01874	0.15	-0.8
1,987,249	-		EFB2_01874	0.15	-0.8
1,987,249	-		EFB2_01874	0.15	-0.4
1,987,249	-		EFB2_01874	0.15	+0.6
1,987,249	-		EFB2_01874	0.15	+1.5
1,987,249	-		EFB2_01874	0.15	+0.0
1,987,249	-		EFB2_01874	0.15	-1.3
1,987,249	-		EFB2_01874	0.15	-1.2
1,987,249	-		EFB2_01874	0.15	+1.6
1,987,302	+		EFB2_01874	0.22	-1.7
1,987,302	+		EFB2_01874	0.22	-0.0
1,987,302	+		EFB2_01874	0.22	+0.3
1,987,303	-		EFB2_01874	0.22	-0.4
1,987,303	-		EFB2_01874	0.22	-0.1
1,987,303	-		EFB2_01874	0.22	+0.6
1,987,303	-		EFB2_01874	0.22	-1.2
1,987,303	-		EFB2_01874	0.22	+0.9
1,987,315	+		EFB2_01874	0.23	+0.7
1,987,315	+		EFB2_01874	0.23	+1.6
1,987,315	+		EFB2_01874	0.23	+0.2
1,987,315	+		EFB2_01874	0.23	+1.3
1,987,315	+		EFB2_01874	0.23	+0.1
1,987,315	+		EFB2_01874	0.23	-2.6
1,987,315	+		EFB2_01874	0.23	-2.8
1,987,315	+		EFB2_01874	0.23	-2.4
1,987,315	+		EFB2_01874	0.23	+2.0
1,987,315	+		EFB2_01874	0.23	-1.8
1,987,315	+		EFB2_01874	0.23	-2.7
1,987,315	+		EFB2_01874	0.23	+0.3
1,987,315	+		EFB2_01874	0.23	+0.2
1,987,315	+		EFB2_01874	0.23	-3.3
1,987,315	+		EFB2_01874	0.23	-0.1
1,987,315	+		EFB2_01874	0.23	-2.6
1,987,315	+		EFB2_01874	0.23	+0.8
1,987,315	+		EFB2_01874	0.23	+0.7
1,987,315	+		EFB2_01874	0.23	-0.8
1,987,316	-		EFB2_01874	0.24	+1.2
1,987,316	-		EFB2_01874	0.24	+0.6
1,987,316	-		EFB2_01874	0.24	-1.1
1,987,316	-		EFB2_01874	0.24	-2.8
1,987,316	-		EFB2_01874	0.24	-4.3
1,987,316	-		EFB2_01874	0.24	-0.8
1,987,316	-		EFB2_01874	0.24	-0.9
1,987,316	-		EFB2_01874	0.24	+1.8
1,987,316	-		EFB2_01874	0.24	-1.7
1,987,316	-		EFB2_01874	0.24	+1.5
1,987,316	-		EFB2_01874	0.24	+2.0
1,987,316	-		EFB2_01874	0.24	+1.5
1,987,316	-		EFB2_01874	0.24	-1.6
1,987,316	-		EFB2_01874	0.24	+1.5
1,987,316	-		EFB2_01874	0.24	+1.1
1,987,316	-		EFB2_01874	0.24	-0.1
1,987,316	-		EFB2_01874	0.24	-2.3
1,987,316	-		EFB2_01874	0.24	-1.0
1,987,316	-		EFB2_01874	0.24	-0.6
1,987,316	-		EFB2_01874	0.24	-0.6
1,987,316	-		EFB2_01874	0.24	-1.1
1,987,316	-		EFB2_01874	0.24	+0.4
1,987,360	+		EFB2_01874	0.29	-2.1
1,987,360	+		EFB2_01874	0.29	+0.9
1,987,361	-		EFB2_01874	0.29	-1.1
1,987,361	-		EFB2_01874	0.29	+0.7
1,987,427	+		EFB2_01874	0.38	+1.0
1,987,427	+		EFB2_01874	0.38	-0.6
1,987,427	+		EFB2_01874	0.38	+0.3
1,987,427	+		EFB2_01874	0.38	-0.4
1,987,427	+		EFB2_01874	0.38	+1.7
1,987,427	+		EFB2_01874	0.38	-2.3
1,987,427	+		EFB2_01874	0.38	-0.1
1,987,427	+		EFB2_01874	0.38	+0.8
1,987,427	+		EFB2_01874	0.38	+1.7
1,987,428	-		EFB2_01874	0.38	+1.4
1,987,428	-		EFB2_01874	0.38	+1.6
1,987,428	-		EFB2_01874	0.38	-1.9
1,987,428	-		EFB2_01874	0.38	+0.7
1,987,428	-		EFB2_01874	0.38	+0.8
1,987,428	-		EFB2_01874	0.38	+0.1
1,987,428	-		EFB2_01874	0.38	+0.6
1,987,434	+		EFB2_01874	0.39	-2.6
1,987,434	+		EFB2_01874	0.39	-2.9
1,987,434	+		EFB2_01874	0.39	+3.1
1,987,434	+		EFB2_01874	0.39	+1.2
1,987,434	+		EFB2_01874	0.39	+1.0
1,987,435	-		EFB2_01874	0.39	-0.8
1,987,435	-		EFB2_01874	0.39	-1.6
1,987,435	-		EFB2_01874	0.39	-0.3
1,987,435	-		EFB2_01874	0.39	-2.1
1,987,435	-		EFB2_01874	0.39	+1.3
1,987,443	+		EFB2_01874	0.40	-1.8
1,987,443	+		EFB2_01874	0.40	+0.9
1,987,444	-		EFB2_01874	0.40	+1.7
1,987,448	+		EFB2_01874	0.41	-0.2
1,987,448	+		EFB2_01874	0.41	-1.1
1,987,448	+		EFB2_01874	0.41	-0.4
1,987,448	+		EFB2_01874	0.41	+1.0
1,987,449	-		EFB2_01874	0.41	-0.2
1,987,449	-		EFB2_01874	0.41	+2.0
1,987,449	-		EFB2_01874	0.41	+1.7
1,987,449	-		EFB2_01874	0.41	+2.1
1,987,451	+		EFB2_01874	0.41	-0.4
1,987,451	+		EFB2_01874	0.41	-0.4
1,987,451	+		EFB2_01874	0.41	-2.1
1,987,452	-		EFB2_01874	0.41	-0.4
1,987,452	-		EFB2_01874	0.41	+1.4
1,987,501	+		EFB2_01874	0.47	-1.9
1,987,522	-		EFB2_01874	0.50	-0.6
1,987,522	-		EFB2_01874	0.50	-0.5
1,987,522	-		EFB2_01874	0.50	+0.4
1,987,522	-		EFB2_01874	0.50	-3.3
1,987,565	+		EFB2_01874	0.56	-1.0
1,987,566	-		EFB2_01874	0.56	+0.1
1,987,569	+		EFB2_01874	0.56	-0.6
1,987,569	+		EFB2_01874	0.56	+0.6
1,987,570	-		EFB2_01874	0.56	-0.0
1,987,570	-		EFB2_01874	0.56	-1.4
1,987,570	-		EFB2_01874	0.56	-0.6
1,987,593	+		EFB2_01874	0.59	-2.8
1,987,593	+		EFB2_01874	0.59	-0.6
1,987,593	+		EFB2_01874	0.59	+0.2
1,987,594	-		EFB2_01874	0.59	+0.8
1,987,594	-		EFB2_01874	0.59	+0.9
1,987,594	-		EFB2_01874	0.59	-1.3
1,987,594	-		EFB2_01874	0.59	+1.2
1,987,594	-		EFB2_01874	0.59	-3.8
1,987,616	+		EFB2_01874	0.62	+2.5
1,987,617	-		EFB2_01874	0.62	+2.8
1,987,649	+		EFB2_01874	0.66	-1.5
1,987,649	+		EFB2_01874	0.66	-1.5
1,987,649	+		EFB2_01874	0.66	-2.8
1,987,649	+		EFB2_01874	0.66	+2.6
1,987,649	+		EFB2_01874	0.66	+0.1
1,987,649	+		EFB2_01874	0.66	-0.5
1,987,649	+		EFB2_01874	0.66	-0.7
1,987,649	+		EFB2_01874	0.66	-0.9
1,987,649	+		EFB2_01874	0.66	+0.8
1,987,649	+		EFB2_01874	0.66	-1.5
1,987,649	+		EFB2_01874	0.66	+0.5
1,987,649	+		EFB2_01874	0.66	+1.6
1,987,649	+		EFB2_01874	0.66	+0.8
1,987,649	+		EFB2_01874	0.66	-1.2
1,987,649	+		EFB2_01874	0.66	-2.5
1,987,649	+		EFB2_01874	0.66	-0.7
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