Strain Fitness in Escherichia fergusonii Becca around EFB2_00146

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
142,634	+		EFB2_00144	0.60	-0.5
142,652	+		EFB2_00144	0.63	-0.8
142,652	+		EFB2_00144	0.63	+0.9
142,652	+		EFB2_00144	0.63	-0.9
142,652	+		EFB2_00144	0.63	-1.4
142,652	+		EFB2_00144	0.63	+0.6
142,653	-		EFB2_00144	0.63	+0.1
142,670	+		EFB2_00144	0.65	+0.2
142,670	+		EFB2_00144	0.65	+0.2
142,670	+		EFB2_00144	0.65	-0.7
142,670	+		EFB2_00144	0.65	-0.3
142,670	+		EFB2_00144	0.65	+2.3
142,670	+		EFB2_00144	0.65	-0.9
142,670	+		EFB2_00144	0.65	+2.2
142,671	-		EFB2_00144	0.65	-1.3
142,671	-		EFB2_00144	0.65	-3.4
142,671	-		EFB2_00144	0.65	+0.2
142,671	-		EFB2_00144	0.65	-2.0
142,671	-		EFB2_00144	0.65	-0.0
142,674	+		EFB2_00144	0.65	+0.5
142,674	+		EFB2_00144	0.65	+0.9
142,674	+		EFB2_00144	0.65	-1.2
142,674	+		EFB2_00144	0.65	+1.6
142,675	-		EFB2_00144	0.66	-0.3
142,675	-		EFB2_00144	0.66	-2.0
142,675	-		EFB2_00144	0.66	-0.7
142,675	-		EFB2_00144	0.66	+0.2
142,694	+		EFB2_00144	0.68	+1.0
142,694	+		EFB2_00144	0.68	+0.3
142,694	+		EFB2_00144	0.68	-0.4
142,694	+		EFB2_00144	0.68	-0.1
142,695	-		EFB2_00144	0.68	-2.5
142,695	-		EFB2_00144	0.68	+0.7
142,698	+		EFB2_00144	0.69	-0.2
142,698	+		EFB2_00144	0.69	-1.0
142,698	+		EFB2_00144	0.69	+0.8
142,698	+		EFB2_00144	0.69	+1.4
142,698	+		EFB2_00144	0.69	+0.9
142,699	-		EFB2_00144	0.69	-1.9
142,699	-		EFB2_00144	0.69	+0.3
142,699	-		EFB2_00144	0.69	-0.7
142,725	+		EFB2_00144	0.72	-1.3
142,725	+		EFB2_00144	0.72	-0.9
142,725	+		EFB2_00144	0.72	-0.9
142,725	+		EFB2_00144	0.72	-1.6
142,725	+		EFB2_00144	0.72	+0.5
142,725	+		EFB2_00144	0.72	-1.2
142,725	+		EFB2_00144	0.72	-3.6
142,725	+		EFB2_00144	0.72	+0.3
142,725	+		EFB2_00144	0.72	+0.4
142,725	+		EFB2_00144	0.72	-2.3
142,725	+		EFB2_00144	0.72	-2.3
142,725	+		EFB2_00144	0.72	-0.2
142,726	-		EFB2_00144	0.72	-2.5
142,726	-		EFB2_00144	0.72	-0.6
142,726	-		EFB2_00144	0.72	+1.3
142,726	-		EFB2_00144	0.72	+1.0
142,726	-		EFB2_00144	0.72	+0.6
142,726	-		EFB2_00144	0.72	+0.6
142,726	-		EFB2_00144	0.72	-0.7
142,726	-		EFB2_00144	0.72	+0.1
142,726	-		EFB2_00144	0.72	+1.0
142,726	-		EFB2_00144	0.72	+0.3
142,726	-		EFB2_00144	0.72	+0.2
142,726	-		EFB2_00144	0.72	+0.7
142,726	-		EFB2_00144	0.72	-0.3
142,726	-		EFB2_00144	0.72	+1.4
142,726	-		EFB2_00144	0.72	+0.6
142,726	-		EFB2_00144	0.72	+0.7
142,726	-		EFB2_00144	0.72	-0.1
142,752	+		EFB2_00144	0.76	+1.3
142,753	-		EFB2_00144	0.76	-0.6
142,753	-		EFB2_00144	0.76	-0.2
142,753	-		EFB2_00144	0.76	+0.1
142,787	+		EFB2_00144	0.80	-0.2
142,787	+		EFB2_00144	0.80	-1.0
142,787	+		EFB2_00144	0.80	+0.9
142,788	-		EFB2_00144	0.80	-0.9
142,788	-		EFB2_00144	0.80	+0.1
142,788	-		EFB2_00144	0.80	+1.0
142,788	-		EFB2_00144	0.80	-0.1
142,788	-		EFB2_00144	0.80	+0.7
142,809	+		EFB2_00144	0.83	-0.9
142,809	+		EFB2_00144	0.83	+1.2
142,809	+		EFB2_00144	0.83	+0.7
142,809	+		EFB2_00144	0.83	-1.9
142,809	+		EFB2_00144	0.83	-0.1
142,809	+		EFB2_00144	0.83	+0.4
142,809	+		EFB2_00144	0.83	-0.3
142,809	+		EFB2_00144	0.83	+1.9
142,809	+		EFB2_00144	0.83	-0.9
142,809	+		EFB2_00144	0.83	-3.2
142,809	+		EFB2_00144	0.83	-1.1
142,809	+		EFB2_00144	0.83	-0.4
142,809	+		EFB2_00144	0.83	-0.5
142,810	-		EFB2_00144	0.83	+0.3
142,810	-		EFB2_00144	0.83	+0.7
142,810	-		EFB2_00144	0.83	+0.4
142,810	-		EFB2_00144	0.83	+0.6
142,810	-		EFB2_00144	0.83	-1.8
142,810	-		EFB2_00144	0.83	-2.4
142,810	-		EFB2_00144	0.83	-0.0
142,810	-		EFB2_00144	0.83	+2.2
142,810	-		EFB2_00144	0.83	+0.3
142,810	-		EFB2_00144	0.83	+0.6
142,810	-		EFB2_00144	0.83	+0.5
142,810	-		EFB2_00144	0.83	-0.6
142,810	-		EFB2_00144	0.83	+0.8
142,810	-		EFB2_00144	0.83	-0.0
142,810	-		EFB2_00144	0.83	+0.9
142,810	-		EFB2_00144	0.83	-0.3
142,814	+		EFB2_00144	0.84	+1.8
142,815	-		EFB2_00144	0.84	-0.5
142,835	+		EFB2_00144	0.87	+1.0
142,835	+		EFB2_00144	0.87	-0.8
142,835	+		EFB2_00144	0.87	-0.3
142,835	+		EFB2_00144	0.87	-0.5
142,835	+		EFB2_00144	0.87	+0.8
142,835	+		EFB2_00144	0.87	-0.4
142,835	+		EFB2_00144	0.87	+1.7
142,836	-		EFB2_00144	0.87	-0.4
142,836	-		EFB2_00144	0.87	-0.5
142,836	-		EFB2_00144	0.87	-0.6
142,836	-		EFB2_00144	0.87	+1.2
142,836	-		EFB2_00144	0.87	+0.7
142,837	+		EFB2_00144	0.87	-1.0
142,837	+		EFB2_00144	0.87	+0.2
142,837	+		EFB2_00144	0.87	-0.2
142,837	+		EFB2_00144	0.87	+0.2
142,837	+		EFB2_00144	0.87	-0.5
142,837	+		EFB2_00144	0.87	+0.5
142,837	+		EFB2_00144	0.87	-0.0
142,837	+		EFB2_00144	0.87	+0.9
142,837	+		EFB2_00144	0.87	+1.3
142,837	+		EFB2_00144	0.87	-0.7
142,837	+		EFB2_00144	0.87	+0.9
142,837	+		EFB2_00144	0.87	+0.2
142,837	+		EFB2_00144	0.87	+2.1
142,837	+		EFB2_00144	0.87	-3.4
142,837	+		EFB2_00144	0.87	-0.4
142,837	+		EFB2_00144	0.87	+1.7
142,837	+		EFB2_00144	0.87	-1.9
142,837	+		EFB2_00144	0.87	-0.3
142,838	-		EFB2_00144	0.87	+0.5
142,838	-		EFB2_00144	0.87	+0.1
142,838	-		EFB2_00144	0.87	+1.2
142,838	-		EFB2_00144	0.87	-1.4
142,838	-		EFB2_00144	0.87	-1.0
142,838	-		EFB2_00144	0.87	-0.2
142,838	-		EFB2_00144	0.87	+1.3
142,838	-		EFB2_00144	0.87	+1.7
142,838	-		EFB2_00144	0.87	+0.1
142,838	-		EFB2_00144	0.87	+0.3
142,838	-		EFB2_00144	0.87	+1.6
142,838	-		EFB2_00144	0.87	+0.8
142,838	-		EFB2_00144	0.87	-0.4
142,838	-		EFB2_00144	0.87	-0.0
142,838	-		EFB2_00144	0.87	-0.0
142,844	+		EFB2_00144	0.88	-0.5
142,844	+		EFB2_00144	0.88	+1.1
142,844	+		EFB2_00144	0.88	+1.0
142,844	+		EFB2_00144	0.88	+1.7
142,845	-		EFB2_00144	0.88	+0.7
142,855	+		EFB2_00144	0.89	-0.0
142,855	+		EFB2_00144	0.89	+0.8
142,856	-		EFB2_00144	0.89	-0.8
142,856	-		EFB2_00144	0.89	-2.8
142,856	-		EFB2_00144	0.89	+0.2
142,856	-		EFB2_00144	0.89	-0.3
142,856	-		EFB2_00144	0.89	+0.5
142,868	+				+1.1
142,869	-				-0.1
142,869	-				+1.4
142,869	-				+1.2
142,869	-				+0.1
142,886	+				+0.5
142,886	+				+0.3
142,886	+				-0.7
142,886	+				-0.5
142,886	+				-1.8
142,887	-				+4.5
142,887	-				-0.2
142,887	-				-3.7
142,887	-				-3.8
142,887	-				+1.0
142,887	-				+0.2
142,887	-				+0.2
142,887	-				+0.4
142,887	-				-0.2
142,899	+				-3.4
142,900	-				+1.6
142,902	+				+1.4
142,902	+				-0.6
142,903	-				+0.5
142,903	-				-0.6
142,903	-				+0.3
142,903	-				-0.6
142,903	-				-0.1
142,903	-				-0.5
142,910	+				+0.2
142,921	+				+0.1
142,921	+				-0.9
142,921	+				+0.8
142,921	+				-0.6
142,921	+				-0.9
142,921	+				-0.8
142,921	+				+0.1
142,921	+				+2.0
142,921	+				+0.2
142,921	+				+0.2
142,921	+				-0.3
142,921	+				+0.5
142,921	+				+2.1
142,921	+				-0.9
142,921	+				-0.1
142,921	+				-1.2
142,921	+				+0.2
142,921	+				+0.2
142,921	+				+0.4
142,921	+				+0.6
142,922	-				+1.0
142,922	-				+0.6
142,922	-				-0.3
142,922	-				-0.4
142,922	-				+0.4
142,922	-				+0.1
142,922	-				-2.0
142,922	-				+2.0
142,922	-				+0.7
142,922	-				+1.6
142,922	-				-0.7
142,922	-				-0.9
142,922	-				-0.1
142,922	-				-2.3
142,922	-				+0.8
142,922	-				+0.9
142,922	-				+0.2
142,922	-				-2.9
142,922	-				-1.8
142,922	-				-1.7
142,922	-				-1.0
142,922	-				+0.6
142,922	-				+1.5
142,922	-				-0.7
142,922	-				-1.0
142,922	-				+2.1
142,922	-				-0.9
142,922	-				+0.3
142,923	+				-1.1
142,923	+				+0.2
142,923	+				-0.5
142,923	+				-1.7
142,923	+				-1.8
142,923	+				+0.8
142,923	+				-2.3
142,923	+				-1.0
142,923	+				+0.4
142,923	+				-0.5
142,923	+				-1.3
142,923	+				+1.0
142,923	+				+0.2
142,923	+				+0.9
142,923	+				+0.2
142,923	+				-3.3
142,923	+				-0.2
142,923	+				-0.7
142,923	+				+0.2
142,923	+				-0.1
142,923	+				+0.3
142,923	+				-2.5
142,923	+				+1.1
142,923	+				-2.5
142,923	+				+0.8
142,924	-				+0.1
142,924	-				-1.1
142,924	-				+0.6
142,924	-				-0.3
142,924	-				-0.7
142,924	-				+0.1
142,924	-				-0.6
142,924	-				-0.2
142,924	-				+0.4
142,924	-				+0.2
142,924	-				+0.7
142,924	-				-1.0
142,924	-				+0.9
142,924	-				+0.1
142,924	-				+0.7
142,924	-				-1.8
142,924	-				+0.9
142,924	-				+1.0
142,924	-				+1.2
142,924	-				+1.4
142,931	+				+0.9
142,931	+				+0.0
142,931	+				-0.3
142,931	+				+0.1
142,931	+				-2.9
142,931	+				+0.6
142,931	+				-0.1
142,931	+				-0.8
142,932	-				-1.0
142,932	-				-0.3
142,932	-				+1.0
142,932	-				-0.6
142,932	-				-1.7
142,932	-				+0.1
142,932	-				-0.0
142,932	-				+0.2
142,932	-				+0.1
142,932	-				+0.9
142,938	+				-0.9
142,939	-				-1.2
142,939	-				-1.8
142,940	+				+1.1
142,940	+				+0.9
142,940	+				+0.0
142,940	+				+0.7
142,940	+				+0.5
142,940	+				+0.8
142,940	+				+1.2
142,940	+				-2.1
142,940	+				+0.6
142,940	+				+0.3
142,940	+				-2.4
142,940	+				+0.4
142,940	+				+4.0
142,940	+				+0.2
142,940	+				+0.5
142,940	+				-1.7
142,940	+				+0.2
142,940	+				+0.3
142,940	+				+1.0
142,940	+				-0.7
142,940	+				+1.1
142,940	+				-0.5
142,940	+				-2.1
142,940	+				-0.1
142,940	+				-2.0
142,940	+				+1.6
142,940	+				+0.7
142,940	+				-3.0
142,941	-				-2.4
142,941	-				+0.9
142,941	-				-0.4
142,941	-				+0.4
142,941	-				-1.2
142,941	-				-0.9
142,941	-				-0.5
142,941	-				+0.4
142,941	-				-0.2
142,941	-				+1.0
142,941	-				-0.1
142,941	-				-1.1
142,941	-				-0.5
142,941	-				-1.0
142,941	-				-1.1
142,941	-				-1.0
142,941	-				-0.0
142,941	-				+3.0
142,941	-				-0.4
142,941	-				-2.2
142,941	-				+0.3
142,941	-				-0.2
142,941	-				-1.3
142,941	-				-0.3
142,941	-				+0.4
142,941	-				+0.7
142,941	-				-2.9
142,941	-				+0.2
142,941	-				+0.6
142,941	-				+0.0
142,941	-				+0.4
142,941	-				-3.3
142,941	-				-1.5
142,941	-				+1.1
142,941	-				+1.1
142,941	-				+1.0
142,941	-				-4.5
142,941	-				-1.0
142,941	-				-0.4
142,941	-				+0.9
142,941	-				+0.4
142,941	-				-0.8
142,941	-				+0.2
142,941	-				+0.7
142,941	-				-1.0
142,941	-				-1.8
142,950	+				+0.4
142,950	+				-2.1
142,951	-				+0.5
142,951	-				-1.6
142,951	-				+0.8
142,951	-				-0.6
142,958	+				-0.1
142,959	-				+0.3
142,959	-				-0.5
142,974	+				-2.5
142,974	+				+0.2
142,974	+				-1.9
142,974	+				-3.3
142,974	+				-0.9
142,975	-				+0.7
142,976	+				-0.5
142,977	-				-0.8
142,977	-				+0.3
143,004	+				+0.3
143,004	+				-0.4
143,005	-				+0.5
143,006	+				+0.9
143,006	+				+1.0
143,006	+				+0.1
143,006	+				+0.4
143,006	+				+1.3
143,006	+				+1.2
143,007	-				+0.5
143,007	-				+0.1
143,007	-				-0.1
143,007	-				+1.0
143,010	+				+0.5
143,010	+				-2.6
143,010	+				+0.8
143,010	+				+0.2
143,010	+				-0.9
143,010	+				-4.1
143,010	+				-2.0
143,010	+				+1.2
143,010	+				+0.1
143,010	+				-0.3
143,010	+				-1.3
143,010	+				-0.5
143,010	+				-0.3
143,011	-				+1.6
143,011	-				+0.1
143,011	-				-0.4
143,011	-				+0.6
143,011	-				+0.6
143,011	-				-3.0
143,011	-				-0.9
143,013	+				+0.1
143,013	+				+0.5
143,041	+				+1.1
143,042	-				+1.2
143,052	-				+0.1
143,052	-				-3.1
143,052	-				-1.4
143,052	-				+0.2
143,086	+				+0.2
143,086	+				+0.0
143,086	+				-1.5
143,086	+				-0.6
143,086	+				-1.6
143,086	+				-1.6
143,086	+				+1.1
143,086	+				-1.1
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