Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04365

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04363 and BACOVA_04364 are separated by 7 nucleotidesBACOVA_04364 and BACOVA_04365 overlap by 4 nucleotidesBACOVA_04365 and BACOVA_04366 overlap by 41 nucleotidesBACOVA_04366 and BACOVA_04367 are separated by 160 nucleotidesBACOVA_04367 and BACOVA_04368 are separated by 189 nucleotides BACOVA_04363: BACOVA_04363 - hypothetical protein, at 259,651 to 260,199 _04363 BACOVA_04364: BACOVA_04364 - hypothetical protein, at 260,207 to 260,827 _04364 BACOVA_04365: BACOVA_04365 - hypothetical protein, at 260,824 to 260,973 _04365 BACOVA_04366: BACOVA_04366 - hypothetical protein, at 260,933 to 261,037 _04366 BACOVA_04367: BACOVA_04367 - hypothetical protein, at 261,198 to 261,446 _04367 BACOVA_04368: BACOVA_04368 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 261,636 to 263,618 _04368 Position (kb) 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 259.892 kb on - strand, within BACOVA_04363at 259.909 kb on - strand, within BACOVA_04363at 259.909 kb on - strand, within BACOVA_04363at 259.910 kb on + strand, within BACOVA_04363at 259.926 kb on + strand, within BACOVA_04363at 259.927 kb on - strand, within BACOVA_04363at 260.037 kb on + strand, within BACOVA_04363at 260.038 kb on - strand, within BACOVA_04363at 260.052 kb on - strand, within BACOVA_04363at 260.061 kb on + strand, within BACOVA_04363at 260.066 kb on + strand, within BACOVA_04363at 260.066 kb on + strand, within BACOVA_04363at 260.067 kb on - strand, within BACOVA_04363at 260.069 kb on - strand, within BACOVA_04363at 260.069 kb on - strand, within BACOVA_04363at 260.073 kb on + strand, within BACOVA_04363at 260.073 kb on + strand, within BACOVA_04363at 260.117 kb on + strand, within BACOVA_04363at 260.216 kb on + strandat 260.220 kb on + strandat 260.220 kb on + strandat 260.221 kb on - strandat 260.221 kb on - strandat 260.227 kb on + strandat 260.231 kb on + strandat 260.260 kb on + strandat 260.267 kb on - strandat 260.273 kb on - strand, within BACOVA_04364at 260.282 kb on + strand, within BACOVA_04364at 260.282 kb on + strand, within BACOVA_04364at 260.290 kb on + strand, within BACOVA_04364at 260.290 kb on + strand, within BACOVA_04364at 260.378 kb on + strand, within BACOVA_04364at 260.435 kb on + strand, within BACOVA_04364at 260.435 kb on + strand, within BACOVA_04364at 260.451 kb on - strand, within BACOVA_04364at 260.470 kb on + strand, within BACOVA_04364at 260.489 kb on + strand, within BACOVA_04364at 260.511 kb on - strand, within BACOVA_04364at 260.515 kb on + strand, within BACOVA_04364at 260.516 kb on - strand, within BACOVA_04364at 260.518 kb on - strand, within BACOVA_04364at 260.537 kb on + strand, within BACOVA_04364at 260.542 kb on - strand, within BACOVA_04364at 260.581 kb on + strand, within BACOVA_04364at 260.581 kb on + strand, within BACOVA_04364at 260.584 kb on + strand, within BACOVA_04364at 260.595 kb on - strand, within BACOVA_04364at 260.635 kb on + strand, within BACOVA_04364at 260.635 kb on + strand, within BACOVA_04364at 260.636 kb on - strand, within BACOVA_04364at 260.706 kb on + strand, within BACOVA_04364at 260.713 kb on + strand, within BACOVA_04364at 260.713 kb on + strand, within BACOVA_04364at 260.714 kb on - strand, within BACOVA_04364at 260.717 kb on - strand, within BACOVA_04364at 260.727 kb on - strand, within BACOVA_04364at 260.811 kb on + strandat 260.811 kb on + strandat 260.811 kb on + strandat 260.812 kb on - strandat 260.812 kb on - strandat 260.814 kb on - strandat 260.829 kb on + strandat 260.863 kb on + strand, within BACOVA_04365at 260.934 kb on + strandat 260.935 kb on - strandat 260.974 kb on + strand, within BACOVA_04366at 260.975 kb on - strand, within BACOVA_04366at 260.975 kb on - strand, within BACOVA_04366at 261.001 kb on - strand, within BACOVA_04366at 261.052 kb on + strandat 261.061 kb on - strandat 261.176 kb on + strandat 261.177 kb on - strandat 261.186 kb on + strandat 261.186 kb on + strandat 261.187 kb on - strandat 261.188 kb on + strandat 261.188 kb on + strandat 261.188 kb on + strandat 261.189 kb on - strandat 261.189 kb on - strandat 261.190 kb on + strandat 261.191 kb on - strandat 261.197 kb on - strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.217 kb on + strandat 261.219 kb on + strandat 261.254 kb on - strand, within BACOVA_04367at 261.391 kb on + strand, within BACOVA_04367at 261.392 kb on - strand, within BACOVA_04367at 261.392 kb on - strand, within BACOVA_04367at 261.473 kb on + strandat 261.570 kb on + strandat 261.570 kb on - strandat 261.571 kb on - strandat 261.575 kb on + strandat 261.595 kb on + strandat 261.596 kb on - strandat 261.597 kb on + strandat 261.622 kb on - strandat 261.624 kb on - strandat 261.647 kb on - strandat 261.647 kb on - strandat 261.697 kb on + strandat 261.698 kb on - strandat 261.809 kb on + strandat 261.809 kb on + strandat 261.836 kb on + strand, within BACOVA_04368at 261.906 kb on + strand, within BACOVA_04368at 261.907 kb on - strand, within BACOVA_04368at 261.954 kb on - strand, within BACOVA_04368at 261.963 kb on - strand, within BACOVA_04368

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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259,892 - BACOVA_04363 0.44 -1.8
259,909 - BACOVA_04363 0.47 +0.4
259,909 - BACOVA_04363 0.47 -1.1
259,910 + BACOVA_04363 0.47 +0.4
259,926 + BACOVA_04363 0.50 +0.0
259,927 - BACOVA_04363 0.50 -0.8
260,037 + BACOVA_04363 0.70 -1.8
260,038 - BACOVA_04363 0.70 +0.1
260,052 - BACOVA_04363 0.73 -0.1
260,061 + BACOVA_04363 0.75 -1.9
260,066 + BACOVA_04363 0.76 -2.0
260,066 + BACOVA_04363 0.76 -0.5
260,067 - BACOVA_04363 0.76 +0.4
260,069 - BACOVA_04363 0.76 -1.4
260,069 - BACOVA_04363 0.76 -0.8
260,073 + BACOVA_04363 0.77 -0.3
260,073 + BACOVA_04363 0.77 -1.4
260,117 + BACOVA_04363 0.85 -1.5
260,216 + -1.5
260,220 + +0.9
260,220 + -2.6
260,221 - +0.5
260,221 - +0.1
260,227 + -0.4
260,231 + +0.6
260,260 + -0.1
260,267 - +0.4
260,273 - BACOVA_04364 0.11 +0.2
260,282 + BACOVA_04364 0.12 -0.6
260,282 + BACOVA_04364 0.12 +1.6
260,290 + BACOVA_04364 0.13 +1.6
260,290 + BACOVA_04364 0.13 +0.4
260,378 + BACOVA_04364 0.28 -0.9
260,435 + BACOVA_04364 0.37 +0.8
260,435 + BACOVA_04364 0.37 -0.3
260,451 - BACOVA_04364 0.39 +0.2
260,470 + BACOVA_04364 0.42 +1.0
260,489 + BACOVA_04364 0.45 +0.5
260,511 - BACOVA_04364 0.49 -1.9
260,515 + BACOVA_04364 0.50 -0.0
260,516 - BACOVA_04364 0.50 -0.1
260,518 - BACOVA_04364 0.50 +1.4
260,537 + BACOVA_04364 0.53 +2.0
260,542 - BACOVA_04364 0.54 +0.6
260,581 + BACOVA_04364 0.60 -1.2
260,581 + BACOVA_04364 0.60 -0.4
260,584 + BACOVA_04364 0.61 -1.6
260,595 - BACOVA_04364 0.62 +1.4
260,635 + BACOVA_04364 0.69 -2.1
260,635 + BACOVA_04364 0.69 +0.7
260,636 - BACOVA_04364 0.69 -1.9
260,706 + BACOVA_04364 0.80 -1.6
260,713 + BACOVA_04364 0.81 +2.1
260,713 + BACOVA_04364 0.81 +0.7
260,714 - BACOVA_04364 0.82 +0.0
260,717 - BACOVA_04364 0.82 +0.2
260,727 - BACOVA_04364 0.84 -0.4
260,811 + -0.4
260,811 + +0.7
260,811 + -1.4
260,812 - +0.5
260,812 - -0.2
260,814 - +0.9
260,829 + -0.5
260,863 + BACOVA_04365 0.26 -1.0
260,934 + +0.8
260,935 - +0.4
260,974 + BACOVA_04366 0.39 -1.0
260,975 - BACOVA_04366 0.40 +2.5
260,975 - BACOVA_04366 0.40 -1.2
261,001 - BACOVA_04366 0.65 -0.9
261,052 + +0.4
261,061 - -1.0
261,176 + +0.4
261,177 - -2.3
261,186 + -0.4
261,186 + -0.9
261,187 - -0.1
261,188 + -1.3
261,188 + +0.1
261,188 + -0.6
261,189 - -1.1
261,189 - +0.1
261,190 + +0.2
261,191 - -1.4
261,197 - -0.5
261,210 + -0.4
261,210 + +0.5
261,217 + +1.6
261,219 + +1.1
261,254 - BACOVA_04367 0.22 -1.2
261,391 + BACOVA_04367 0.78 +0.9
261,392 - BACOVA_04367 0.78 -3.5
261,392 - BACOVA_04367 0.78 -0.2
261,473 + +0.1
261,570 + +1.8
261,570 - -0.1
261,571 - -0.9
261,575 + +0.2
261,595 + -1.6
261,596 - +1.9
261,597 + -0.4
261,622 - -0.4
261,624 - +0.5
261,647 - -0.8
261,647 - -0.3
261,697 + -0.1
261,698 - +0.1
261,809 + +0.2
261,809 + +0.1
261,836 + BACOVA_04368 0.10 +0.6
261,906 + BACOVA_04368 0.14 -0.1
261,907 - BACOVA_04368 0.14 -0.1
261,954 - BACOVA_04368 0.16 -0.6
261,963 - BACOVA_04368 0.16 +0.7

Or see this region's nucleotide sequence