Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04232

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04231 and BACOVA_04232 are separated by 43 nucleotidesBACOVA_04232 and BACOVA_04233 are separated by 537 nucleotides BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763 _04231 BACOVA_04232: BACOVA_04232 - hypothetical protein, at 110,807 to 112,363 _04232 BACOVA_04233: BACOVA_04233 - hypothetical protein, at 112,901 to 115,486 _04233 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.736 kb on + strandat 110.784 kb on + strandat 110.822 kb on + strandat 110.868 kb on - strandat 110.868 kb on - strandat 110.910 kb on + strandat 110.910 kb on + strandat 110.963 kb on - strand, within BACOVA_04232at 110.976 kb on + strand, within BACOVA_04232at 110.976 kb on + strand, within BACOVA_04232at 110.977 kb on - strand, within BACOVA_04232at 111.025 kb on + strand, within BACOVA_04232at 111.026 kb on - strand, within BACOVA_04232at 111.026 kb on - strand, within BACOVA_04232at 111.031 kb on - strand, within BACOVA_04232at 111.045 kb on + strand, within BACOVA_04232at 111.046 kb on - strand, within BACOVA_04232at 111.117 kb on + strand, within BACOVA_04232at 111.218 kb on + strand, within BACOVA_04232at 111.219 kb on - strand, within BACOVA_04232at 111.223 kb on + strand, within BACOVA_04232at 111.238 kb on - strand, within BACOVA_04232at 111.240 kb on + strand, within BACOVA_04232at 111.273 kb on - strand, within BACOVA_04232at 111.294 kb on - strand, within BACOVA_04232at 111.301 kb on - strand, within BACOVA_04232at 111.301 kb on - strand, within BACOVA_04232at 111.303 kb on - strand, within BACOVA_04232at 111.303 kb on - strand, within BACOVA_04232at 111.370 kb on + strand, within BACOVA_04232at 111.386 kb on + strand, within BACOVA_04232at 111.387 kb on - strand, within BACOVA_04232at 111.391 kb on + strand, within BACOVA_04232at 111.399 kb on - strand, within BACOVA_04232at 111.399 kb on - strand, within BACOVA_04232at 111.441 kb on + strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.482 kb on - strand, within BACOVA_04232at 111.516 kb on + strand, within BACOVA_04232at 111.517 kb on - strand, within BACOVA_04232at 111.520 kb on + strand, within BACOVA_04232at 111.548 kb on - strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.550 kb on - strand, within BACOVA_04232at 111.550 kb on - strand, within BACOVA_04232at 111.553 kb on + strand, within BACOVA_04232at 111.554 kb on - strand, within BACOVA_04232at 111.571 kb on + strand, within BACOVA_04232at 111.572 kb on - strand, within BACOVA_04232at 111.588 kb on + strand, within BACOVA_04232at 111.589 kb on - strand, within BACOVA_04232at 111.621 kb on + strand, within BACOVA_04232at 111.621 kb on + strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.712 kb on - strand, within BACOVA_04232at 111.712 kb on - strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.731 kb on - strand, within BACOVA_04232at 111.731 kb on - strand, within BACOVA_04232at 111.853 kb on + strand, within BACOVA_04232at 111.853 kb on + strand, within BACOVA_04232at 111.953 kb on - strand, within BACOVA_04232at 111.965 kb on + strand, within BACOVA_04232at 111.965 kb on + strand, within BACOVA_04232at 111.966 kb on - strand, within BACOVA_04232at 112.017 kb on + strand, within BACOVA_04232at 112.019 kb on + strand, within BACOVA_04232at 112.052 kb on + strand, within BACOVA_04232at 112.053 kb on - strand, within BACOVA_04232at 112.053 kb on - strand, within BACOVA_04232at 112.054 kb on + strand, within BACOVA_04232at 112.055 kb on - strand, within BACOVA_04232at 112.075 kb on + strand, within BACOVA_04232at 112.075 kb on + strand, within BACOVA_04232at 112.080 kb on + strand, within BACOVA_04232at 112.080 kb on + strand, within BACOVA_04232at 112.081 kb on - strand, within BACOVA_04232at 112.081 kb on - strand, within BACOVA_04232at 112.081 kb on - strand, within BACOVA_04232at 112.090 kb on + strand, within BACOVA_04232at 112.094 kb on - strand, within BACOVA_04232at 112.111 kb on - strand, within BACOVA_04232at 112.112 kb on - strand, within BACOVA_04232at 112.112 kb on - strand, within BACOVA_04232at 112.116 kb on + strand, within BACOVA_04232at 112.122 kb on - strand, within BACOVA_04232at 112.193 kb on + strand, within BACOVA_04232at 112.248 kb on + strandat 112.262 kb on + strandat 112.272 kb on + strandat 112.273 kb on - strandat 112.288 kb on + strandat 112.296 kb on + strandat 112.297 kb on - strandat 112.354 kb on + strandat 112.363 kb on + strandat 112.364 kb on - strandat 112.376 kb on + strandat 112.376 kb on + strandat 112.404 kb on - strandat 112.407 kb on + strandat 112.407 kb on + strandat 112.413 kb on + strandat 112.467 kb on - strandat 112.504 kb on - strandat 112.568 kb on - strandat 112.589 kb on - strandat 112.594 kb on - strandat 112.624 kb on - strandat 112.628 kb on + strandat 112.630 kb on + strandat 112.631 kb on - strandat 112.631 kb on - strandat 112.633 kb on + strandat 112.633 kb on + strandat 112.633 kb on + strandat 112.644 kb on + strandat 112.644 kb on + strandat 112.658 kb on + strandat 112.664 kb on - strandat 112.718 kb on + strandat 112.753 kb on - strandat 112.753 kb on - strandat 112.808 kb on + strandat 112.809 kb on - strandat 112.812 kb on + strandat 112.818 kb on - strandat 112.864 kb on - strandat 112.864 kb on - strandat 112.864 kb on - strandat 112.872 kb on + strandat 112.902 kb on + strandat 112.932 kb on - strandat 112.984 kb on + strandat 113.044 kb on + strandat 113.045 kb on - strandat 113.045 kb on - strandat 113.045 kb on - strandat 113.097 kb on - strandat 113.110 kb on + strandat 113.111 kb on - strandat 113.116 kb on - strandat 113.152 kb on - strandat 113.155 kb on + strandat 113.156 kb on - strandat 113.166 kb on + strand, within BACOVA_04233at 113.166 kb on + strand, within BACOVA_04233at 113.167 kb on - strand, within BACOVA_04233at 113.167 kb on - strand, within BACOVA_04233at 113.170 kb on + strand, within BACOVA_04233at 113.170 kb on + strand, within BACOVA_04233at 113.171 kb on - strand, within BACOVA_04233at 113.194 kb on + strand, within BACOVA_04233at 113.194 kb on + strand, within BACOVA_04233at 113.220 kb on - strand, within BACOVA_04233at 113.220 kb on - strand, within BACOVA_04233at 113.234 kb on + strand, within BACOVA_04233at 113.234 kb on + strand, within BACOVA_04233at 113.268 kb on + strand, within BACOVA_04233at 113.268 kb on + strand, within BACOVA_04233at 113.268 kb on + strand, within BACOVA_04233at 113.276 kb on + strand, within BACOVA_04233at 113.277 kb on - strand, within BACOVA_04233at 113.277 kb on - strand, within BACOVA_04233at 113.317 kb on + strand, within BACOVA_04233at 113.318 kb on - strand, within BACOVA_04233at 113.336 kb on + strand, within BACOVA_04233at 113.336 kb on + strand, within BACOVA_04233at 113.336 kb on + strand, within BACOVA_04233

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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110,736 + -2.7
110,784 + +0.2
110,822 + -1.2
110,868 - -0.8
110,868 - +0.0
110,910 + +0.9
110,910 + -0.3
110,963 - BACOVA_04232 0.10 -0.3
110,976 + BACOVA_04232 0.11 -0.1
110,976 + BACOVA_04232 0.11 -0.4
110,977 - BACOVA_04232 0.11 -1.1
111,025 + BACOVA_04232 0.14 -0.4
111,026 - BACOVA_04232 0.14 -0.9
111,026 - BACOVA_04232 0.14 +1.1
111,031 - BACOVA_04232 0.14 -0.9
111,045 + BACOVA_04232 0.15 +0.1
111,046 - BACOVA_04232 0.15 -0.6
111,117 + BACOVA_04232 0.20 -0.1
111,218 + BACOVA_04232 0.26 -0.6
111,219 - BACOVA_04232 0.26 -1.9
111,223 + BACOVA_04232 0.27 -0.9
111,238 - BACOVA_04232 0.28 +0.5
111,240 + BACOVA_04232 0.28 +0.8
111,273 - BACOVA_04232 0.30 -0.6
111,294 - BACOVA_04232 0.31 +0.9
111,301 - BACOVA_04232 0.32 -3.0
111,301 - BACOVA_04232 0.32 -0.0
111,303 - BACOVA_04232 0.32 +1.6
111,303 - BACOVA_04232 0.32 -1.3
111,370 + BACOVA_04232 0.36 -0.8
111,386 + BACOVA_04232 0.37 -1.8
111,387 - BACOVA_04232 0.37 +0.1
111,391 + BACOVA_04232 0.38 -0.5
111,399 - BACOVA_04232 0.38 -0.8
111,399 - BACOVA_04232 0.38 -0.3
111,441 + BACOVA_04232 0.41 +0.3
111,442 - BACOVA_04232 0.41 -0.7
111,442 - BACOVA_04232 0.41 +0.3
111,442 - BACOVA_04232 0.41 -0.3
111,482 - BACOVA_04232 0.43 -1.5
111,516 + BACOVA_04232 0.46 -0.3
111,517 - BACOVA_04232 0.46 +0.8
111,520 + BACOVA_04232 0.46 -0.6
111,548 - BACOVA_04232 0.48 -0.2
111,549 + BACOVA_04232 0.48 -0.7
111,549 + BACOVA_04232 0.48 +1.2
111,549 + BACOVA_04232 0.48 +0.7
111,549 + BACOVA_04232 0.48 -0.3
111,550 - BACOVA_04232 0.48 -0.1
111,550 - BACOVA_04232 0.48 +1.0
111,553 + BACOVA_04232 0.48 -0.3
111,554 - BACOVA_04232 0.48 -0.9
111,571 + BACOVA_04232 0.49 -0.5
111,572 - BACOVA_04232 0.49 +0.4
111,588 + BACOVA_04232 0.50 -0.7
111,589 - BACOVA_04232 0.50 +1.2
111,621 + BACOVA_04232 0.52 -0.8
111,621 + BACOVA_04232 0.52 +0.7
111,622 - BACOVA_04232 0.52 +0.0
111,622 - BACOVA_04232 0.52 -0.8
111,622 - BACOVA_04232 0.52 -0.1
111,671 - BACOVA_04232 0.55 -0.0
111,671 - BACOVA_04232 0.55 -1.1
111,671 - BACOVA_04232 0.55 -0.2
111,712 - BACOVA_04232 0.58 -0.1
111,712 - BACOVA_04232 0.58 -1.1
111,728 + BACOVA_04232 0.59 -1.7
111,728 + BACOVA_04232 0.59 +0.9
111,728 + BACOVA_04232 0.59 -0.7
111,731 - BACOVA_04232 0.59 +0.3
111,731 - BACOVA_04232 0.59 -0.1
111,853 + BACOVA_04232 0.67 -0.2
111,853 + BACOVA_04232 0.67 -1.3
111,953 - BACOVA_04232 0.74 +0.2
111,965 + BACOVA_04232 0.74 -0.6
111,965 + BACOVA_04232 0.74 +0.0
111,966 - BACOVA_04232 0.74 +0.4
112,017 + BACOVA_04232 0.78 -0.5
112,019 + BACOVA_04232 0.78 +0.0
112,052 + BACOVA_04232 0.80 +0.0
112,053 - BACOVA_04232 0.80 +1.0
112,053 - BACOVA_04232 0.80 -1.2
112,054 + BACOVA_04232 0.80 -1.3
112,055 - BACOVA_04232 0.80 -0.3
112,075 + BACOVA_04232 0.81 -0.4
112,075 + BACOVA_04232 0.81 -0.5
112,080 + BACOVA_04232 0.82 -0.7
112,080 + BACOVA_04232 0.82 -0.8
112,081 - BACOVA_04232 0.82 -0.9
112,081 - BACOVA_04232 0.82 +0.0
112,081 - BACOVA_04232 0.82 -1.7
112,090 + BACOVA_04232 0.82 -0.2
112,094 - BACOVA_04232 0.83 -0.3
112,111 - BACOVA_04232 0.84 +0.3
112,112 - BACOVA_04232 0.84 -0.7
112,112 - BACOVA_04232 0.84 -0.1
112,116 + BACOVA_04232 0.84 -0.2
112,122 - BACOVA_04232 0.84 -0.2
112,193 + BACOVA_04232 0.89 -1.0
112,248 + +1.3
112,262 + +1.4
112,272 + -1.3
112,273 - -1.6
112,288 + -0.9
112,296 + -0.7
112,297 - -1.4
112,354 + -2.1
112,363 + -0.9
112,364 - +0.1
112,376 + -0.1
112,376 + -0.4
112,404 - -1.9
112,407 + -0.9
112,407 + +1.2
112,413 + -0.2
112,467 - -0.4
112,504 - -1.1
112,568 - -0.0
112,589 - -0.1
112,594 - -0.1
112,624 - +0.9
112,628 + +0.6
112,630 + -0.0
112,631 - +0.1
112,631 - +1.2
112,633 + -2.9
112,633 + +0.5
112,633 + -0.7
112,644 + +0.6
112,644 + +2.7
112,658 + +0.7
112,664 - -0.3
112,718 + -1.3
112,753 - +0.6
112,753 - +0.0
112,808 + -0.1
112,809 - -0.1
112,812 + +1.9
112,818 - +0.5
112,864 - +1.1
112,864 - -0.7
112,864 - +0.1
112,872 + +0.2
112,902 + +0.4
112,932 - -0.0
112,984 + -0.7
113,044 + +0.2
113,045 - -1.2
113,045 - -0.9
113,045 - +0.1
113,097 - -0.3
113,110 + -0.8
113,111 - +0.7
113,116 - -0.5
113,152 - +0.3
113,155 + -0.5
113,156 - -1.7
113,166 + BACOVA_04233 0.10 -1.3
113,166 + BACOVA_04233 0.10 +0.5
113,167 - BACOVA_04233 0.10 -1.4
113,167 - BACOVA_04233 0.10 -0.7
113,170 + BACOVA_04233 0.10 -0.1
113,170 + BACOVA_04233 0.10 -1.3
113,171 - BACOVA_04233 0.10 -0.7
113,194 + BACOVA_04233 0.11 -0.4
113,194 + BACOVA_04233 0.11 +1.1
113,220 - BACOVA_04233 0.12 -1.8
113,220 - BACOVA_04233 0.12 +0.4
113,234 + BACOVA_04233 0.13 +1.1
113,234 + BACOVA_04233 0.13 +0.8
113,268 + BACOVA_04233 0.14 -2.0
113,268 + BACOVA_04233 0.14 +0.9
113,268 + BACOVA_04233 0.14 -0.5
113,276 + BACOVA_04233 0.15 +1.4
113,277 - BACOVA_04233 0.15 -0.8
113,277 - BACOVA_04233 0.15 -1.2
113,317 + BACOVA_04233 0.16 +1.1
113,318 - BACOVA_04233 0.16 -0.7
113,336 + BACOVA_04233 0.17 -0.9
113,336 + BACOVA_04233 0.17 -1.6
113,336 + BACOVA_04233 0.17 +0.8

Or see this region's nucleotide sequence