Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04231

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04228 and BACOVA_04229 are separated by 114 nucleotidesBACOVA_04229 and BACOVA_04230 overlap by 8 nucleotidesBACOVA_04230 and BACOVA_04231 are separated by 283 nucleotidesBACOVA_04231 and BACOVA_04232 are separated by 43 nucleotides BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418 _04228 BACOVA_04229: BACOVA_04229 - hypothetical protein, at 108,533 to 108,637 _04229 BACOVA_04230: BACOVA_04230 - DNA-binding protein HU, at 108,630 to 108,905 _04230 BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763 _04231 BACOVA_04232: BACOVA_04232 - hypothetical protein, at 110,807 to 112,363 _04232 Position (kb) 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 108.201 kb on + strand, within BACOVA_04228at 108.242 kb on + strand, within BACOVA_04228at 108.242 kb on + strand, within BACOVA_04228at 108.262 kb on + strand, within BACOVA_04228at 108.282 kb on + strand, within BACOVA_04228at 108.282 kb on + strand, within BACOVA_04228at 108.314 kb on - strandat 108.393 kb on - strandat 108.419 kb on - strandat 108.435 kb on + strandat 108.436 kb on - strandat 108.438 kb on + strandat 108.443 kb on - strandat 108.450 kb on - strandat 108.450 kb on - strandat 108.456 kb on + strandat 108.456 kb on + strandat 108.457 kb on - strandat 108.457 kb on - strandat 108.494 kb on - strandat 108.510 kb on + strandat 108.510 kb on + strandat 108.543 kb on + strandat 108.543 kb on + strandat 108.919 kb on + strandat 108.919 kb on + strandat 109.001 kb on + strandat 109.079 kb on + strandat 109.079 kb on + strandat 109.151 kb on + strandat 110.736 kb on + strandat 110.784 kb on + strandat 110.822 kb on + strandat 110.868 kb on - strandat 110.868 kb on - strandat 110.910 kb on + strandat 110.910 kb on + strandat 110.963 kb on - strand, within BACOVA_04232at 110.976 kb on + strand, within BACOVA_04232at 110.976 kb on + strand, within BACOVA_04232at 110.977 kb on - strand, within BACOVA_04232at 111.025 kb on + strand, within BACOVA_04232at 111.026 kb on - strand, within BACOVA_04232at 111.026 kb on - strand, within BACOVA_04232at 111.031 kb on - strand, within BACOVA_04232at 111.045 kb on + strand, within BACOVA_04232at 111.046 kb on - strand, within BACOVA_04232at 111.117 kb on + strand, within BACOVA_04232at 111.218 kb on + strand, within BACOVA_04232at 111.219 kb on - strand, within BACOVA_04232at 111.223 kb on + strand, within BACOVA_04232at 111.238 kb on - strand, within BACOVA_04232at 111.240 kb on + strand, within BACOVA_04232at 111.273 kb on - strand, within BACOVA_04232at 111.294 kb on - strand, within BACOVA_04232at 111.301 kb on - strand, within BACOVA_04232at 111.301 kb on - strand, within BACOVA_04232at 111.303 kb on - strand, within BACOVA_04232at 111.303 kb on - strand, within BACOVA_04232at 111.370 kb on + strand, within BACOVA_04232at 111.386 kb on + strand, within BACOVA_04232at 111.387 kb on - strand, within BACOVA_04232at 111.391 kb on + strand, within BACOVA_04232at 111.399 kb on - strand, within BACOVA_04232at 111.399 kb on - strand, within BACOVA_04232at 111.441 kb on + strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.442 kb on - strand, within BACOVA_04232at 111.482 kb on - strand, within BACOVA_04232at 111.516 kb on + strand, within BACOVA_04232at 111.517 kb on - strand, within BACOVA_04232at 111.520 kb on + strand, within BACOVA_04232at 111.548 kb on - strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.549 kb on + strand, within BACOVA_04232at 111.550 kb on - strand, within BACOVA_04232at 111.550 kb on - strand, within BACOVA_04232at 111.553 kb on + strand, within BACOVA_04232at 111.554 kb on - strand, within BACOVA_04232at 111.571 kb on + strand, within BACOVA_04232at 111.572 kb on - strand, within BACOVA_04232at 111.588 kb on + strand, within BACOVA_04232at 111.589 kb on - strand, within BACOVA_04232at 111.621 kb on + strand, within BACOVA_04232at 111.621 kb on + strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.622 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.671 kb on - strand, within BACOVA_04232at 111.712 kb on - strand, within BACOVA_04232at 111.712 kb on - strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.728 kb on + strand, within BACOVA_04232at 111.731 kb on - strand, within BACOVA_04232at 111.731 kb on - strand, within BACOVA_04232

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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108,201 + BACOVA_04228 0.79 -0.2
108,242 + BACOVA_04228 0.83 -0.5
108,242 + BACOVA_04228 0.83 +1.0
108,262 + BACOVA_04228 0.85 +0.8
108,282 + BACOVA_04228 0.87 +0.5
108,282 + BACOVA_04228 0.87 -0.1
108,314 - +0.2
108,393 - +1.3
108,419 - +1.1
108,435 + -0.4
108,436 - +0.4
108,438 + -0.4
108,443 - -0.1
108,450 - +1.0
108,450 - +0.5
108,456 + -2.0
108,456 + -0.9
108,457 - +0.3
108,457 - -0.9
108,494 - +1.3
108,510 + -0.5
108,510 + -0.8
108,543 + +0.6
108,543 + -0.0
108,919 + +1.0
108,919 + +0.1
109,001 + +1.9
109,079 + -0.3
109,079 + +1.7
109,151 + -2.0
110,736 + -2.7
110,784 + +0.2
110,822 + -1.2
110,868 - -0.8
110,868 - +0.0
110,910 + +0.9
110,910 + -0.3
110,963 - BACOVA_04232 0.10 -0.3
110,976 + BACOVA_04232 0.11 -0.1
110,976 + BACOVA_04232 0.11 -0.4
110,977 - BACOVA_04232 0.11 -1.1
111,025 + BACOVA_04232 0.14 -0.4
111,026 - BACOVA_04232 0.14 -0.9
111,026 - BACOVA_04232 0.14 +1.1
111,031 - BACOVA_04232 0.14 -0.9
111,045 + BACOVA_04232 0.15 +0.1
111,046 - BACOVA_04232 0.15 -0.6
111,117 + BACOVA_04232 0.20 -0.1
111,218 + BACOVA_04232 0.26 -0.6
111,219 - BACOVA_04232 0.26 -1.9
111,223 + BACOVA_04232 0.27 -0.9
111,238 - BACOVA_04232 0.28 +0.5
111,240 + BACOVA_04232 0.28 +0.8
111,273 - BACOVA_04232 0.30 -0.6
111,294 - BACOVA_04232 0.31 +0.9
111,301 - BACOVA_04232 0.32 -3.0
111,301 - BACOVA_04232 0.32 -0.0
111,303 - BACOVA_04232 0.32 +1.6
111,303 - BACOVA_04232 0.32 -1.3
111,370 + BACOVA_04232 0.36 -0.8
111,386 + BACOVA_04232 0.37 -1.8
111,387 - BACOVA_04232 0.37 +0.1
111,391 + BACOVA_04232 0.38 -0.5
111,399 - BACOVA_04232 0.38 -0.8
111,399 - BACOVA_04232 0.38 -0.3
111,441 + BACOVA_04232 0.41 +0.3
111,442 - BACOVA_04232 0.41 -0.7
111,442 - BACOVA_04232 0.41 +0.3
111,442 - BACOVA_04232 0.41 -0.3
111,482 - BACOVA_04232 0.43 -1.5
111,516 + BACOVA_04232 0.46 -0.3
111,517 - BACOVA_04232 0.46 +0.8
111,520 + BACOVA_04232 0.46 -0.6
111,548 - BACOVA_04232 0.48 -0.2
111,549 + BACOVA_04232 0.48 -0.7
111,549 + BACOVA_04232 0.48 +1.2
111,549 + BACOVA_04232 0.48 +0.7
111,549 + BACOVA_04232 0.48 -0.3
111,550 - BACOVA_04232 0.48 -0.1
111,550 - BACOVA_04232 0.48 +1.0
111,553 + BACOVA_04232 0.48 -0.3
111,554 - BACOVA_04232 0.48 -0.9
111,571 + BACOVA_04232 0.49 -0.5
111,572 - BACOVA_04232 0.49 +0.4
111,588 + BACOVA_04232 0.50 -0.7
111,589 - BACOVA_04232 0.50 +1.2
111,621 + BACOVA_04232 0.52 -0.8
111,621 + BACOVA_04232 0.52 +0.7
111,622 - BACOVA_04232 0.52 +0.0
111,622 - BACOVA_04232 0.52 -0.8
111,622 - BACOVA_04232 0.52 -0.1
111,671 - BACOVA_04232 0.55 -0.0
111,671 - BACOVA_04232 0.55 -1.1
111,671 - BACOVA_04232 0.55 -0.2
111,712 - BACOVA_04232 0.58 -0.1
111,712 - BACOVA_04232 0.58 -1.1
111,728 + BACOVA_04232 0.59 -1.7
111,728 + BACOVA_04232 0.59 +0.9
111,728 + BACOVA_04232 0.59 -0.7
111,731 - BACOVA_04232 0.59 +0.3
111,731 - BACOVA_04232 0.59 -0.1

Or see this region's nucleotide sequence