Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01057

Experiment: D-Galactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01055 and BACOVA_01056 are separated by 53 nucleotidesBACOVA_01056 and BACOVA_01057 are separated by 14 nucleotidesBACOVA_01057 and BACOVA_01058 are separated by 12 nucleotides BACOVA_01055: BACOVA_01055 - hypothetical protein, at 262,870 to 264,504 _01055 BACOVA_01056: BACOVA_01056 - hypothetical protein, at 264,558 to 264,764 _01056 BACOVA_01057: BACOVA_01057 - hypothetical protein, at 264,779 to 266,002 _01057 BACOVA_01058: BACOVA_01058 - glutamate--tRNA ligase, at 266,015 to 267,532 _01058 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 263.807 kb on + strand, within BACOVA_01055at 263.817 kb on + strand, within BACOVA_01055at 263.817 kb on + strand, within BACOVA_01055at 263.817 kb on + strand, within BACOVA_01055at 263.818 kb on - strand, within BACOVA_01055at 263.828 kb on - strand, within BACOVA_01055at 263.886 kb on + strand, within BACOVA_01055at 263.887 kb on - strand, within BACOVA_01055at 263.892 kb on + strand, within BACOVA_01055at 263.897 kb on + strand, within BACOVA_01055at 263.898 kb on - strand, within BACOVA_01055at 263.898 kb on - strand, within BACOVA_01055at 263.898 kb on - strand, within BACOVA_01055at 263.915 kb on + strand, within BACOVA_01055at 263.915 kb on + strand, within BACOVA_01055at 263.930 kb on + strand, within BACOVA_01055at 263.931 kb on - strand, within BACOVA_01055at 263.931 kb on - strand, within BACOVA_01055at 263.931 kb on - strand, within BACOVA_01055at 263.931 kb on - strand, within BACOVA_01055at 263.941 kb on + strand, within BACOVA_01055at 263.941 kb on + strand, within BACOVA_01055at 263.942 kb on - strand, within BACOVA_01055at 263.943 kb on + strand, within BACOVA_01055at 263.943 kb on + strand, within BACOVA_01055at 263.943 kb on + strand, within BACOVA_01055at 263.944 kb on - strand, within BACOVA_01055at 264.009 kb on + strand, within BACOVA_01055at 264.018 kb on + strand, within BACOVA_01055at 264.026 kb on + strand, within BACOVA_01055at 264.026 kb on + strand, within BACOVA_01055at 264.027 kb on - strand, within BACOVA_01055at 264.027 kb on - strand, within BACOVA_01055at 264.094 kb on - strand, within BACOVA_01055at 264.223 kb on + strand, within BACOVA_01055at 264.224 kb on - strand, within BACOVA_01055at 264.312 kb on - strand, within BACOVA_01055at 264.312 kb on - strand, within BACOVA_01055at 264.312 kb on - strand, within BACOVA_01055at 264.315 kb on - strand, within BACOVA_01055at 264.315 kb on - strand, within BACOVA_01055at 264.340 kb on + strand, within BACOVA_01055at 264.367 kb on + strandat 264.399 kb on - strandat 264.407 kb on - strandat 264.407 kb on - strandat 264.420 kb on + strandat 264.421 kb on - strandat 264.433 kb on - strandat 264.433 kb on - strandat 264.455 kb on + strandat 264.456 kb on - strandat 264.456 kb on - strandat 264.483 kb on + strandat 264.483 kb on - strandat 264.483 kb on - strandat 264.507 kb on + strandat 264.507 kb on + strandat 264.507 kb on + strandat 264.508 kb on - strandat 264.511 kb on + strandat 264.512 kb on - strandat 264.512 kb on - strandat 264.512 kb on - strandat 264.515 kb on + strandat 264.567 kb on - strandat 264.574 kb on + strandat 264.574 kb on + strandat 264.577 kb on - strandat 264.578 kb on + strandat 264.578 kb on + strandat 264.587 kb on - strand, within BACOVA_01056at 264.612 kb on - strand, within BACOVA_01056at 264.686 kb on + strand, within BACOVA_01056at 264.695 kb on + strand, within BACOVA_01056at 264.696 kb on - strand, within BACOVA_01056at 264.746 kb on + strandat 264.746 kb on + strandat 264.746 kb on + strandat 264.746 kb on + strandat 264.767 kb on + strandat 264.768 kb on - strandat 264.772 kb on + strandat 264.772 kb on + strandat 264.775 kb on - strandat 264.777 kb on - strandat 264.781 kb on - strandat 264.800 kb on - strandat 264.800 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
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263,807 + BACOVA_01055 0.57 +0.7
263,817 + BACOVA_01055 0.58 -1.0
263,817 + BACOVA_01055 0.58 -0.7
263,817 + BACOVA_01055 0.58 +1.1
263,818 - BACOVA_01055 0.58 -0.1
263,828 - BACOVA_01055 0.59 -1.6
263,886 + BACOVA_01055 0.62 -0.6
263,887 - BACOVA_01055 0.62 -1.1
263,892 + BACOVA_01055 0.63 +0.2
263,897 + BACOVA_01055 0.63 -0.6
263,898 - BACOVA_01055 0.63 +1.2
263,898 - BACOVA_01055 0.63 -0.0
263,898 - BACOVA_01055 0.63 +0.1
263,915 + BACOVA_01055 0.64 +0.9
263,915 + BACOVA_01055 0.64 +2.6
263,930 + BACOVA_01055 0.65 +0.3
263,931 - BACOVA_01055 0.65 +5.0
263,931 - BACOVA_01055 0.65 -0.3
263,931 - BACOVA_01055 0.65 -3.8
263,931 - BACOVA_01055 0.65 -0.7
263,941 + BACOVA_01055 0.66 -0.4
263,941 + BACOVA_01055 0.66 +0.9
263,942 - BACOVA_01055 0.66 -0.1
263,943 + BACOVA_01055 0.66 -0.1
263,943 + BACOVA_01055 0.66 +0.2
263,943 + BACOVA_01055 0.66 -0.5
263,944 - BACOVA_01055 0.66 +0.4
264,009 + BACOVA_01055 0.70 +0.8
264,018 + BACOVA_01055 0.70 +0.5
264,026 + BACOVA_01055 0.71 +0.4
264,026 + BACOVA_01055 0.71 +0.1
264,027 - BACOVA_01055 0.71 -0.7
264,027 - BACOVA_01055 0.71 -0.3
264,094 - BACOVA_01055 0.75 -1.4
264,223 + BACOVA_01055 0.83 +0.2
264,224 - BACOVA_01055 0.83 +0.3
264,312 - BACOVA_01055 0.88 -0.1
264,312 - BACOVA_01055 0.88 -0.5
264,312 - BACOVA_01055 0.88 -0.3
264,315 - BACOVA_01055 0.88 -0.9
264,315 - BACOVA_01055 0.88 +0.5
264,340 + BACOVA_01055 0.90 -0.9
264,367 + +0.0
264,399 - -1.1
264,407 - -1.4
264,407 - -0.6
264,420 + -0.4
264,421 - -0.4
264,433 - -1.6
264,433 - +0.2
264,455 + -0.5
264,456 - -2.6
264,456 - -0.5
264,483 + -0.7
264,483 - -2.5
264,483 - -1.6
264,507 + +0.1
264,507 + +0.0
264,507 + -2.3
264,508 - -0.6
264,511 + -1.5
264,512 - +2.3
264,512 - +0.2
264,512 - +1.0
264,515 + -0.9
264,567 - -0.3
264,574 + -2.0
264,574 + -1.7
264,577 - +0.5
264,578 + +0.9
264,578 + +0.0
264,587 - BACOVA_01056 0.14 -2.5
264,612 - BACOVA_01056 0.26 +0.6
264,686 + BACOVA_01056 0.62 -0.8
264,695 + BACOVA_01056 0.66 -0.3
264,696 - BACOVA_01056 0.67 -0.9
264,746 + -2.4
264,746 + -2.6
264,746 + +0.0
264,746 + -2.8
264,767 + -2.9
264,768 - +0.4
264,772 + +0.2
264,772 + -0.8
264,775 - -0.9
264,777 - -2.3
264,781 - +0.8
264,800 - +0.7
264,800 - -1.1

Or see this region's nucleotide sequence