Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00867 and BACOVA_00869 are separated by 11 nucleotides BACOVA_00869 and BACOVA_00868 overlap by 31 nucleotides BACOVA_00868 and BACOVA_00870 are separated by 60 nucleotides BACOVA_00870 and BACOVA_00871 are separated by 53 nucleotides
BACOVA_00867: BACOVA_00867 - hypothetical protein, at 123,220 to 124,329
_00867
BACOVA_00869: BACOVA_00869 - hypothetical protein, at 124,341 to 124,448
_00869
BACOVA_00868: BACOVA_00868 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 124,418 to 126,832
_00868
BACOVA_00870: BACOVA_00870 - hypothetical protein, at 126,893 to 127,000
_00870
BACOVA_00871: BACOVA_00871 - putative 8-amino-7-oxononanoate synthase, at 127,054 to 128,208
_00871
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 123.423 kb on + strand, within BACOVA_00867 at 123.424 kb on - strand, within BACOVA_00867 at 123.442 kb on - strand, within BACOVA_00867 at 123.471 kb on + strand, within BACOVA_00867 at 123.534 kb on - strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.628 kb on + strand, within BACOVA_00867 at 123.644 kb on + strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.647 kb on - strand, within BACOVA_00867 at 123.698 kb on - strand, within BACOVA_00867 at 123.709 kb on - strand, within BACOVA_00867 at 123.741 kb on + strand, within BACOVA_00867 at 123.742 kb on - strand, within BACOVA_00867 at 123.745 kb on + strand, within BACOVA_00867 at 123.746 kb on - strand, within BACOVA_00867 at 123.774 kb on - strand, within BACOVA_00867 at 123.778 kb on - strand, within BACOVA_00867 at 123.795 kb on - strand, within BACOVA_00867 at 123.797 kb on - strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.873 kb on + strand, within BACOVA_00867 at 123.874 kb on - strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.925 kb on - strand, within BACOVA_00867 at 124.004 kb on + strand, within BACOVA_00867 at 124.082 kb on - strand, within BACOVA_00867 at 124.175 kb on - strand, within BACOVA_00867 at 124.192 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.197 kb on - strand, within BACOVA_00867 at 124.222 kb on + strand at 124.229 kb on - strand at 124.250 kb on + strand at 124.280 kb on - strand at 124.280 kb on - strand at 124.313 kb on - strand at 124.378 kb on + strand, within BACOVA_00869 at 124.438 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.508 kb on - strand at 124.548 kb on + strand at 124.549 kb on - strand at 124.552 kb on - strand at 124.588 kb on + strand at 124.589 kb on - strand at 124.595 kb on + strand at 124.606 kb on + strand at 124.654 kb on - strand at 124.727 kb on - strand, within BACOVA_00868 at 124.830 kb on - strand, within BACOVA_00868 at 124.964 kb on - strand, within BACOVA_00868 at 124.988 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.134 kb on + strand, within BACOVA_00868 at 125.184 kb on + strand, within BACOVA_00868 at 125.210 kb on - strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.291 kb on - strand, within BACOVA_00868 at 125.302 kb on + strand, within BACOVA_00868 at 125.344 kb on - strand, within BACOVA_00868 at 125.363 kb on - strand, within BACOVA_00868 at 125.460 kb on + strand, within BACOVA_00868 at 125.461 kb on - strand, within BACOVA_00868 at 125.461 kb on - strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.462 kb on + strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.463 kb on - strand, within BACOVA_00868 at 125.555 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.603 kb on + strand, within BACOVA_00868 at 125.634 kb on - strand, within BACOVA_00868 at 125.641 kb on - strand, within BACOVA_00868 at 125.666 kb on - strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.729 kb on + strand, within BACOVA_00868 at 125.732 kb on - strand, within BACOVA_00868 at 125.770 kb on - strand, within BACOVA_00868 at 125.773 kb on + strand, within BACOVA_00868 at 125.838 kb on + strand, within BACOVA_00868 at 125.876 kb on + strand, within BACOVA_00868 at 125.877 kb on - strand, within BACOVA_00868 at 125.901 kb on + strand, within BACOVA_00868 at 125.926 kb on - strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.936 kb on + strand, within BACOVA_00868 at 125.998 kb on + strand, within BACOVA_00868 at 126.127 kb on + strand, within BACOVA_00868 at 126.128 kb on - strand, within BACOVA_00868 at 126.129 kb on + strand, within BACOVA_00868 at 126.129 kb on + strand, within BACOVA_00868 at 126.130 kb on - strand, within BACOVA_00868 at 126.132 kb on + strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.133 kb on - strand, within BACOVA_00868 at 126.139 kb on - strand, within BACOVA_00868 at 126.168 kb on - strand, within BACOVA_00868 at 126.224 kb on + strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.298 kb on - strand, within BACOVA_00868 at 126.322 kb on + strand, within BACOVA_00868 at 126.352 kb on - strand, within BACOVA_00868 at 126.363 kb on + strand, within BACOVA_00868 at 126.363 kb on + strand, within BACOVA_00868 at 126.364 kb on - strand, within BACOVA_00868 at 126.364 kb on - strand, within BACOVA_00868 at 126.395 kb on + strand, within BACOVA_00868 at 126.396 kb on - strand, within BACOVA_00868 at 126.396 kb on - strand, within BACOVA_00868 at 126.397 kb on + strand, within BACOVA_00868 at 126.398 kb on - strand, within BACOVA_00868 at 126.415 kb on - strand, within BACOVA_00868 at 126.440 kb on - strand, within BACOVA_00868 at 126.440 kb on - strand, within BACOVA_00868 at 126.470 kb on - strand, within BACOVA_00868 at 126.481 kb on + strand, within BACOVA_00868 at 126.482 kb on - strand, within BACOVA_00868 at 126.488 kb on - strand, within BACOVA_00868 at 126.633 kb on + strand at 126.682 kb on + strand at 126.683 kb on - strand at 126.683 kb on - strand at 126.691 kb on + strand at 126.748 kb on - strand at 126.748 kb on - strand at 126.749 kb on + strand at 126.786 kb on + strand at 126.811 kb on + strand at 126.812 kb on - strand at 126.812 kb on - strand at 126.847 kb on - strand at 126.849 kb on + strand at 126.990 kb on + strand at 127.022 kb on + strand at 127.023 kb on - strand at 127.023 kb on - strand at 127.033 kb on + strand at 127.034 kb on - strand at 127.037 kb on - strand at 127.068 kb on + strand at 127.069 kb on - strand at 127.108 kb on + strand at 127.186 kb on - strand, within BACOVA_00871 at 127.192 kb on + strand, within BACOVA_00871 at 127.193 kb on - strand, within BACOVA_00871 at 127.267 kb on - strand, within BACOVA_00871 at 127.310 kb on - strand, within BACOVA_00871 at 127.310 kb on - strand, within BACOVA_00871 at 127.331 kb on + strand, within BACOVA_00871 at 127.362 kb on + strand, within BACOVA_00871 at 127.362 kb on + strand, within BACOVA_00871 at 127.363 kb on - strand, within BACOVA_00871 at 127.363 kb on - strand, within BACOVA_00871 at 127.364 kb on + strand, within BACOVA_00871 at 127.365 kb on - strand, within BACOVA_00871 at 127.378 kb on + strand, within BACOVA_00871 at 127.390 kb on - strand, within BACOVA_00871 at 127.397 kb on + strand, within BACOVA_00871 at 127.398 kb on - strand, within BACOVA_00871 at 127.398 kb on - strand, within BACOVA_00871 at 127.428 kb on + strand, within BACOVA_00871 at 127.495 kb on - strand, within BACOVA_00871 at 127.516 kb on - strand, within BACOVA_00871 at 127.559 kb on - strand, within BACOVA_00871 at 127.573 kb on - strand, within BACOVA_00871 at 127.587 kb on + strand, within BACOVA_00871 at 127.649 kb on - strand, within BACOVA_00871 at 127.649 kb on - strand, within BACOVA_00871 at 127.670 kb on + strand, within BACOVA_00871 at 127.670 kb on + strand, within BACOVA_00871 at 127.713 kb on - strand, within BACOVA_00871 at 127.713 kb on - strand, within BACOVA_00871 at 127.737 kb on + strand, within BACOVA_00871 at 127.749 kb on - strand, within BACOVA_00871 at 127.799 kb on - strand, within BACOVA_00871 at 127.799 kb on - strand, within BACOVA_00871 at 127.800 kb on + strand, within BACOVA_00871 at 127.801 kb on - strand, within BACOVA_00871
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 123,423 + BACOVA_00867 0.18 -1.1 123,424 - BACOVA_00867 0.18 -1.7 123,442 - BACOVA_00867 0.20 -0.5 123,471 + BACOVA_00867 0.23 -0.6 123,534 - BACOVA_00867 0.28 -1.0 123,578 + BACOVA_00867 0.32 +1.2 123,578 + BACOVA_00867 0.32 -1.9 123,628 + BACOVA_00867 0.37 +0.2 123,644 + BACOVA_00867 0.38 +0.9 123,645 - BACOVA_00867 0.38 -1.7 123,645 - BACOVA_00867 0.38 -1.3 123,647 - BACOVA_00867 0.38 -1.6 123,698 - BACOVA_00867 0.43 -1.6 123,709 - BACOVA_00867 0.44 +0.7 123,741 + BACOVA_00867 0.47 -0.8 123,742 - BACOVA_00867 0.47 -3.2 123,745 + BACOVA_00867 0.47 -1.5 123,746 - BACOVA_00867 0.47 -1.2 123,774 - BACOVA_00867 0.50 -2.6 123,778 - BACOVA_00867 0.50 +0.0 123,795 - BACOVA_00867 0.52 -3.4 123,797 - BACOVA_00867 0.52 -2.5 123,799 + BACOVA_00867 0.52 -2.2 123,799 + BACOVA_00867 0.52 -0.3 123,800 - BACOVA_00867 0.52 -1.0 123,800 - BACOVA_00867 0.52 +1.1 123,800 - BACOVA_00867 0.52 -0.9 123,800 - BACOVA_00867 0.52 -3.2 123,873 + BACOVA_00867 0.59 -1.3 123,874 - BACOVA_00867 0.59 -2.2 123,879 + BACOVA_00867 0.59 -0.3 123,879 + BACOVA_00867 0.59 -1.1 123,924 + BACOVA_00867 0.63 +1.9 123,924 + BACOVA_00867 0.63 -0.6 123,925 - BACOVA_00867 0.64 -0.2 124,004 + BACOVA_00867 0.71 +0.8 124,082 - BACOVA_00867 0.78 -0.5 124,175 - BACOVA_00867 0.86 -3.4 124,192 + BACOVA_00867 0.88 -1.9 124,196 + BACOVA_00867 0.88 -1.1 124,196 + BACOVA_00867 0.88 +0.1 124,197 - BACOVA_00867 0.88 -1.5 124,222 + -0.3 124,229 - -0.7 124,250 + -0.6 124,280 - -2.4 124,280 - +0.0 124,313 - -0.4 124,378 + BACOVA_00869 0.34 -0.9 124,438 - -1.9 124,491 - -0.3 124,491 - -1.9 124,491 - -0.5 124,491 - -2.6 124,508 - -1.0 124,548 + +0.4 124,549 - -2.1 124,552 - -1.5 124,588 + +0.8 124,589 - -0.9 124,595 + -0.1 124,606 + -0.2 124,654 - -1.9 124,727 - BACOVA_00868 0.13 -0.8 124,830 - BACOVA_00868 0.17 -1.9 124,964 - BACOVA_00868 0.23 -2.5 124,988 + BACOVA_00868 0.24 -2.3 124,990 + BACOVA_00868 0.24 -3.0 124,990 + BACOVA_00868 0.24 -0.6 125,093 - BACOVA_00868 0.28 -0.5 125,093 - BACOVA_00868 0.28 +1.1 125,134 + BACOVA_00868 0.30 -0.8 125,184 + BACOVA_00868 0.32 -1.4 125,210 - BACOVA_00868 0.33 -3.0 125,290 + BACOVA_00868 0.36 -0.6 125,290 + BACOVA_00868 0.36 -0.4 125,290 + BACOVA_00868 0.36 -1.2 125,291 - BACOVA_00868 0.36 -0.1 125,302 + BACOVA_00868 0.37 -1.8 125,344 - BACOVA_00868 0.38 -0.4 125,363 - BACOVA_00868 0.39 +0.1 125,460 + BACOVA_00868 0.43 -2.6 125,461 - BACOVA_00868 0.43 -0.3 125,461 - BACOVA_00868 0.43 -0.8 125,462 + BACOVA_00868 0.43 -2.3 125,462 + BACOVA_00868 0.43 -2.8 125,462 + BACOVA_00868 0.43 +0.1 125,463 - BACOVA_00868 0.43 -0.1 125,463 - BACOVA_00868 0.43 -2.8 125,463 - BACOVA_00868 0.43 +0.4 125,555 + BACOVA_00868 0.47 +2.3 125,603 + BACOVA_00868 0.49 -0.4 125,603 + BACOVA_00868 0.49 +0.7 125,603 + BACOVA_00868 0.49 +0.8 125,634 - BACOVA_00868 0.50 -0.0 125,641 - BACOVA_00868 0.51 +0.4 125,666 - BACOVA_00868 0.52 +0.4 125,729 + BACOVA_00868 0.54 -1.2 125,729 + BACOVA_00868 0.54 -1.5 125,729 + BACOVA_00868 0.54 -0.5 125,732 - BACOVA_00868 0.54 -0.0 125,770 - BACOVA_00868 0.56 +0.8 125,773 + BACOVA_00868 0.56 -1.3 125,838 + BACOVA_00868 0.59 -0.7 125,876 + BACOVA_00868 0.60 -1.5 125,877 - BACOVA_00868 0.60 -0.1 125,901 + BACOVA_00868 0.61 +0.0 125,926 - BACOVA_00868 0.62 -1.5 125,936 + BACOVA_00868 0.63 -0.8 125,936 + BACOVA_00868 0.63 +0.1 125,936 + BACOVA_00868 0.63 +0.7 125,998 + BACOVA_00868 0.65 -1.1 126,127 + BACOVA_00868 0.71 -0.1 126,128 - BACOVA_00868 0.71 -0.9 126,129 + BACOVA_00868 0.71 +0.2 126,129 + BACOVA_00868 0.71 +0.7 126,130 - BACOVA_00868 0.71 -1.5 126,132 + BACOVA_00868 0.71 -2.8 126,133 - BACOVA_00868 0.71 -2.7 126,133 - BACOVA_00868 0.71 -0.4 126,133 - BACOVA_00868 0.71 -1.9 126,139 - BACOVA_00868 0.71 -0.9 126,168 - BACOVA_00868 0.72 -1.3 126,224 + BACOVA_00868 0.75 -0.7 126,298 - BACOVA_00868 0.78 -1.5 126,298 - BACOVA_00868 0.78 -1.0 126,298 - BACOVA_00868 0.78 -1.0 126,298 - BACOVA_00868 0.78 +1.1 126,322 + BACOVA_00868 0.79 -0.7 126,352 - BACOVA_00868 0.80 +0.8 126,363 + BACOVA_00868 0.81 -0.8 126,363 + BACOVA_00868 0.81 -1.0 126,364 - BACOVA_00868 0.81 -2.3 126,364 - BACOVA_00868 0.81 -0.8 126,395 + BACOVA_00868 0.82 +0.1 126,396 - BACOVA_00868 0.82 -2.3 126,396 - BACOVA_00868 0.82 -0.1 126,397 + BACOVA_00868 0.82 -0.4 126,398 - BACOVA_00868 0.82 -0.8 126,415 - BACOVA_00868 0.83 -1.5 126,440 - BACOVA_00868 0.84 -2.4 126,440 - BACOVA_00868 0.84 -0.0 126,470 - BACOVA_00868 0.85 -1.5 126,481 + BACOVA_00868 0.85 -0.3 126,482 - BACOVA_00868 0.85 -1.0 126,488 - BACOVA_00868 0.86 -1.9 126,633 + -0.6 126,682 + -0.2 126,683 - -0.5 126,683 - -0.0 126,691 + -1.0 126,748 - +1.4 126,748 - -2.6 126,749 + +0.2 126,786 + -0.3 126,811 + +1.7 126,812 - -0.1 126,812 - -0.5 126,847 - -0.3 126,849 + +0.1 126,990 + -0.1 127,022 + +1.7 127,023 - +0.1 127,023 - -0.1 127,033 + -0.8 127,034 - -0.8 127,037 - -1.4 127,068 + -0.6 127,069 - -1.1 127,108 + -1.4 127,186 - BACOVA_00871 0.11 -1.2 127,192 + BACOVA_00871 0.12 -0.1 127,193 - BACOVA_00871 0.12 +1.1 127,267 - BACOVA_00871 0.18 -0.7 127,310 - BACOVA_00871 0.22 -0.5 127,310 - BACOVA_00871 0.22 -1.1 127,331 + BACOVA_00871 0.24 +0.6 127,362 + BACOVA_00871 0.27 +0.4 127,362 + BACOVA_00871 0.27 -1.2 127,363 - BACOVA_00871 0.27 -2.0 127,363 - BACOVA_00871 0.27 -0.6 127,364 + BACOVA_00871 0.27 -3.4 127,365 - BACOVA_00871 0.27 -2.7 127,378 + BACOVA_00871 0.28 -0.5 127,390 - BACOVA_00871 0.29 -1.6 127,397 + BACOVA_00871 0.30 +0.9 127,398 - BACOVA_00871 0.30 -0.9 127,398 - BACOVA_00871 0.30 +1.4 127,428 + BACOVA_00871 0.32 -0.8 127,495 - BACOVA_00871 0.38 -0.1 127,516 - BACOVA_00871 0.40 -0.5 127,559 - BACOVA_00871 0.44 -2.6 127,573 - BACOVA_00871 0.45 -0.1 127,587 + BACOVA_00871 0.46 -1.4 127,649 - BACOVA_00871 0.52 -0.9 127,649 - BACOVA_00871 0.52 -1.2 127,670 + BACOVA_00871 0.53 +0.3 127,670 + BACOVA_00871 0.53 -0.2 127,713 - BACOVA_00871 0.57 -1.5 127,713 - BACOVA_00871 0.57 +0.4 127,737 + BACOVA_00871 0.59 -0.7 127,749 - BACOVA_00871 0.60 -1.3 127,799 - BACOVA_00871 0.65 -0.8 127,799 - BACOVA_00871 0.65 -0.9 127,800 + BACOVA_00871 0.65 +1.9 127,801 - BACOVA_00871 0.65 -1.0
Or see this region's nucleotide sequence