Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00858 and BACOVA_00859 are separated by 63 nucleotides BACOVA_00859 and BACOVA_00860 are separated by 21 nucleotides BACOVA_00860 and BACOVA_00861 are separated by 150 nucleotides BACOVA_00861 and BACOVA_00862 are separated by 126 nucleotides BACOVA_00862 and BACOVA_00863 are separated by 44 nucleotides
BACOVA_00858: BACOVA_00858 - mannonate dehydratase, at 112,784 to 113,953
_00858
BACOVA_00859: BACOVA_00859 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 114,017 to 114,829
_00859
BACOVA_00860: BACOVA_00860 - transcriptional regulator, LacI family, at 114,851 to 115,924
_00860
BACOVA_00861: BACOVA_00861 - hypothetical protein, at 116,075 to 116,188
_00861
BACOVA_00862: BACOVA_00862 - hypothetical protein, at 116,315 to 116,602
_00862
BACOVA_00863: BACOVA_00863 - transglycosylase associated protein, at 116,647 to 116,892
_00863
Position (kb)
114
115
116 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 113.862 kb on - strand at 113.862 kb on - strand at 113.862 kb on - strand at 113.866 kb on + strand at 113.887 kb on + strand at 113.888 kb on - strand at 113.888 kb on - strand at 113.891 kb on - strand at 113.915 kb on - strand at 113.922 kb on + strand at 113.945 kb on + strand at 113.946 kb on - strand at 113.946 kb on - strand at 113.949 kb on + strand at 113.950 kb on - strand at 113.954 kb on - strand at 113.954 kb on - strand at 113.956 kb on + strand at 113.956 kb on + strand at 113.957 kb on - strand at 113.970 kb on + strand at 113.970 kb on + strand at 113.980 kb on + strand at 113.981 kb on - strand at 114.005 kb on - strand at 114.015 kb on + strand at 114.015 kb on + strand at 114.019 kb on - strand at 114.019 kb on - strand at 114.023 kb on - strand at 114.056 kb on + strand at 114.056 kb on + strand at 114.056 kb on + strand at 114.057 kb on - strand at 114.057 kb on - strand at 114.062 kb on - strand at 114.111 kb on + strand, within BACOVA_00859 at 114.139 kb on - strand, within BACOVA_00859 at 114.149 kb on - strand, within BACOVA_00859 at 114.196 kb on + strand, within BACOVA_00859 at 114.295 kb on + strand, within BACOVA_00859 at 114.296 kb on - strand, within BACOVA_00859 at 114.297 kb on + strand, within BACOVA_00859 at 114.297 kb on + strand, within BACOVA_00859 at 114.297 kb on + strand, within BACOVA_00859 at 114.298 kb on - strand, within BACOVA_00859 at 114.298 kb on - strand, within BACOVA_00859 at 114.301 kb on + strand, within BACOVA_00859 at 114.316 kb on + strand, within BACOVA_00859 at 114.316 kb on + strand, within BACOVA_00859 at 114.342 kb on - strand, within BACOVA_00859 at 114.386 kb on + strand, within BACOVA_00859 at 114.428 kb on + strand, within BACOVA_00859 at 114.437 kb on - strand, within BACOVA_00859 at 114.444 kb on - strand, within BACOVA_00859 at 114.444 kb on - strand, within BACOVA_00859 at 114.448 kb on + strand, within BACOVA_00859 at 114.524 kb on - strand, within BACOVA_00859 at 114.541 kb on + strand, within BACOVA_00859 at 114.564 kb on - strand, within BACOVA_00859 at 114.572 kb on - strand, within BACOVA_00859 at 114.580 kb on - strand, within BACOVA_00859 at 114.622 kb on + strand, within BACOVA_00859 at 114.622 kb on + strand, within BACOVA_00859 at 114.639 kb on + strand, within BACOVA_00859 at 114.675 kb on - strand, within BACOVA_00859 at 114.680 kb on + strand, within BACOVA_00859 at 114.757 kb on + strand at 114.758 kb on - strand at 114.764 kb on - strand at 114.790 kb on + strand at 114.797 kb on + strand at 114.818 kb on + strand at 114.846 kb on + strand at 114.852 kb on + strand at 114.852 kb on + strand at 114.874 kb on - strand at 114.904 kb on + strand at 114.967 kb on + strand, within BACOVA_00860 at 115.040 kb on - strand, within BACOVA_00860 at 115.101 kb on + strand, within BACOVA_00860 at 115.136 kb on - strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.193 kb on - strand, within BACOVA_00860 at 115.195 kb on - strand, within BACOVA_00860 at 115.297 kb on + strand, within BACOVA_00860 at 115.337 kb on + strand, within BACOVA_00860 at 115.338 kb on - strand, within BACOVA_00860 at 115.399 kb on - strand, within BACOVA_00860 at 115.416 kb on + strand, within BACOVA_00860 at 115.455 kb on + strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.461 kb on + strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.466 kb on + strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.532 kb on + strand, within BACOVA_00860 at 115.570 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.592 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.661 kb on - strand, within BACOVA_00860 at 115.684 kb on - strand, within BACOVA_00860 at 115.708 kb on + strand, within BACOVA_00860 at 115.725 kb on + strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.823 kb on + strand at 115.854 kb on - strand at 115.883 kb on - strand at 115.892 kb on + strand at 115.933 kb on - strand at 115.936 kb on + strand at 116.098 kb on + strand, within BACOVA_00861 at 116.099 kb on - strand, within BACOVA_00861 at 116.101 kb on + strand, within BACOVA_00861 at 116.120 kb on - strand, within BACOVA_00861 at 116.194 kb on + strand at 116.316 kb on + strand at 116.330 kb on - strand at 116.374 kb on + strand, within BACOVA_00862 at 116.407 kb on + strand, within BACOVA_00862 at 116.451 kb on - strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.485 kb on + strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.488 kb on - strand, within BACOVA_00862 at 116.535 kb on + strand, within BACOVA_00862 at 116.594 kb on - strand at 116.619 kb on + strand at 116.620 kb on - strand at 116.640 kb on + strand at 116.644 kb on + strand at 116.644 kb on + strand at 116.683 kb on + strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.710 kb on + strand, within BACOVA_00863 at 116.806 kb on - strand, within BACOVA_00863 at 116.862 kb on + strand, within BACOVA_00863 at 116.875 kb on - strand at 116.875 kb on - strand at 116.876 kb on + strand at 116.877 kb on - strand at 116.882 kb on - strand at 116.883 kb on + strand at 116.883 kb on + strand at 116.893 kb on - strand at 116.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 113,862 - +0.5 113,862 - -1.0 113,862 - +0.9 113,866 + +1.7 113,887 + -1.6 113,888 - -0.2 113,888 - +0.7 113,891 - -1.3 113,915 - -0.3 113,922 + +0.8 113,945 + -1.1 113,946 - -0.6 113,946 - -0.6 113,949 + +0.3 113,950 - -1.0 113,954 - -0.3 113,954 - -2.2 113,956 + -1.3 113,956 + -1.4 113,957 - +0.0 113,970 + +0.5 113,970 + -0.9 113,980 + -0.4 113,981 - -2.2 114,005 - +0.3 114,015 + -3.0 114,015 + +1.7 114,019 - -0.3 114,019 - -0.5 114,023 - +0.7 114,056 + -1.3 114,056 + -0.4 114,056 + +0.2 114,057 - +2.2 114,057 - -1.0 114,062 - -0.2 114,111 + BACOVA_00859 0.12 -0.1 114,139 - BACOVA_00859 0.15 -0.9 114,149 - BACOVA_00859 0.16 +1.2 114,196 + BACOVA_00859 0.22 -0.0 114,295 + BACOVA_00859 0.34 -0.2 114,296 - BACOVA_00859 0.34 +0.2 114,297 + BACOVA_00859 0.34 -3.4 114,297 + BACOVA_00859 0.34 +0.5 114,297 + BACOVA_00859 0.34 +1.3 114,298 - BACOVA_00859 0.35 +0.0 114,298 - BACOVA_00859 0.35 +1.2 114,301 + BACOVA_00859 0.35 -0.6 114,316 + BACOVA_00859 0.37 -3.3 114,316 + BACOVA_00859 0.37 -1.7 114,342 - BACOVA_00859 0.40 +0.5 114,386 + BACOVA_00859 0.45 -0.3 114,428 + BACOVA_00859 0.51 +0.8 114,437 - BACOVA_00859 0.52 -1.6 114,444 - BACOVA_00859 0.53 -1.1 114,444 - BACOVA_00859 0.53 -0.6 114,448 + BACOVA_00859 0.53 +1.0 114,524 - BACOVA_00859 0.62 -0.1 114,541 + BACOVA_00859 0.64 +0.7 114,564 - BACOVA_00859 0.67 +0.3 114,572 - BACOVA_00859 0.68 +0.9 114,580 - BACOVA_00859 0.69 -0.7 114,622 + BACOVA_00859 0.74 -0.4 114,622 + BACOVA_00859 0.74 -1.9 114,639 + BACOVA_00859 0.77 -0.2 114,675 - BACOVA_00859 0.81 +1.1 114,680 + BACOVA_00859 0.82 -0.9 114,757 + +1.1 114,758 - +0.4 114,764 - +1.0 114,790 + -1.2 114,797 + +2.6 114,818 + +0.4 114,846 + -1.5 114,852 + -0.9 114,852 + -1.1 114,874 - -0.3 114,904 + -1.2 114,967 + BACOVA_00860 0.11 -1.5 115,040 - BACOVA_00860 0.18 +0.9 115,101 + BACOVA_00860 0.23 -0.4 115,136 - BACOVA_00860 0.27 +0.6 115,148 + BACOVA_00860 0.28 -2.2 115,148 + BACOVA_00860 0.28 -0.5 115,148 + BACOVA_00860 0.28 -0.7 115,193 - BACOVA_00860 0.32 -0.7 115,195 - BACOVA_00860 0.32 +0.2 115,297 + BACOVA_00860 0.42 -1.2 115,337 + BACOVA_00860 0.45 -1.9 115,338 - BACOVA_00860 0.45 +0.1 115,399 - BACOVA_00860 0.51 -0.9 115,416 + BACOVA_00860 0.53 -0.2 115,455 + BACOVA_00860 0.56 +1.2 115,456 - BACOVA_00860 0.56 -0.3 115,456 - BACOVA_00860 0.56 -0.0 115,456 - BACOVA_00860 0.56 -0.8 115,461 + BACOVA_00860 0.57 +0.2 115,462 - BACOVA_00860 0.57 -1.1 115,462 - BACOVA_00860 0.57 +0.0 115,462 - BACOVA_00860 0.57 -1.8 115,462 - BACOVA_00860 0.57 -0.4 115,466 + BACOVA_00860 0.57 -0.2 115,467 - BACOVA_00860 0.57 +0.4 115,467 - BACOVA_00860 0.57 -2.6 115,532 + BACOVA_00860 0.63 +0.8 115,570 + BACOVA_00860 0.67 +2.5 115,591 + BACOVA_00860 0.69 +0.1 115,591 + BACOVA_00860 0.69 -0.8 115,592 - BACOVA_00860 0.69 +0.2 115,594 - BACOVA_00860 0.69 -1.3 115,594 - BACOVA_00860 0.69 +1.0 115,659 - BACOVA_00860 0.75 -1.5 115,659 - BACOVA_00860 0.75 +0.0 115,659 - BACOVA_00860 0.75 -2.0 115,661 - BACOVA_00860 0.75 -0.1 115,684 - BACOVA_00860 0.78 -0.4 115,708 + BACOVA_00860 0.80 -0.1 115,725 + BACOVA_00860 0.81 +0.9 115,726 - BACOVA_00860 0.81 +0.5 115,726 - BACOVA_00860 0.81 +0.5 115,778 + BACOVA_00860 0.86 +0.4 115,778 + BACOVA_00860 0.86 +0.0 115,778 + BACOVA_00860 0.86 -0.4 115,779 - BACOVA_00860 0.86 +1.3 115,779 - BACOVA_00860 0.86 +0.6 115,823 + +0.1 115,854 - +1.3 115,883 - -0.6 115,892 + -1.8 115,933 - -1.4 115,936 + -1.6 116,098 + BACOVA_00861 0.20 -0.9 116,099 - BACOVA_00861 0.21 -0.9 116,101 + BACOVA_00861 0.23 +0.8 116,120 - BACOVA_00861 0.39 +0.4 116,194 + -0.3 116,316 + -0.0 116,330 - -1.0 116,374 + BACOVA_00862 0.20 -0.5 116,407 + BACOVA_00862 0.32 +0.4 116,451 - BACOVA_00862 0.47 -1.4 116,479 + BACOVA_00862 0.57 -0.2 116,479 + BACOVA_00862 0.57 +0.2 116,485 + BACOVA_00862 0.59 +1.1 116,486 - BACOVA_00862 0.59 -0.8 116,486 - BACOVA_00862 0.59 -1.9 116,488 - BACOVA_00862 0.60 -1.3 116,535 + BACOVA_00862 0.76 -2.7 116,594 - -1.4 116,619 + -4.5 116,620 - +0.2 116,640 + +1.5 116,644 + -0.4 116,644 + -1.4 116,683 + BACOVA_00863 0.15 -1.0 116,684 - BACOVA_00863 0.15 -0.1 116,684 - BACOVA_00863 0.15 +0.3 116,710 + BACOVA_00863 0.26 +0.0 116,806 - BACOVA_00863 0.65 -0.7 116,862 + BACOVA_00863 0.87 +2.9 116,875 - +0.4 116,875 - -0.4 116,876 + +1.4 116,877 - +0.4 116,882 - +1.1 116,883 + +1.1 116,883 + -0.6 116,893 - -0.4 116,895 - +0.8
Or see this region's nucleotide sequence