Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides BACOVA_00832 and BACOVA_00833 overlap by 4 nucleotides BACOVA_00833 and BACOVA_00834 are separated by 87 nucleotides BACOVA_00834 and BACOVA_00835 are separated by 72 nucleotides
BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188
_00831
BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842
_00832
BACOVA_00833: BACOVA_00833 - TonB-dependent receptor, at 83,839 to 85,998
_00833
BACOVA_00834: BACOVA_00834 - hypothetical protein, at 86,086 to 86,400
_00834
BACOVA_00835: BACOVA_00835 - hypothetical protein, at 86,473 to 87,429
_00835
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 82.877 kb on - strand, within BACOVA_00831 at 82.900 kb on + strand, within BACOVA_00831 at 82.915 kb on + strand, within BACOVA_00831 at 82.990 kb on + strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.011 kb on - strand, within BACOVA_00831 at 83.062 kb on - strand, within BACOVA_00831 at 83.065 kb on + strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.080 kb on + strand, within BACOVA_00831 at 83.081 kb on - strand, within BACOVA_00831 at 83.082 kb on + strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.086 kb on + strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.146 kb on + strand at 83.148 kb on + strand at 83.189 kb on - strand at 83.213 kb on + strand at 83.241 kb on + strand at 83.241 kb on + strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.246 kb on - strand at 83.276 kb on + strand at 83.281 kb on - strand at 83.344 kb on + strand at 83.352 kb on + strand at 83.389 kb on + strand at 83.416 kb on - strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.509 kb on + strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.585 kb on - strand, within BACOVA_00832 at 83.588 kb on - strand, within BACOVA_00832 at 83.617 kb on + strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.794 kb on + strand at 83.795 kb on - strand at 83.795 kb on - strand at 83.873 kb on - strand at 83.886 kb on + strand at 83.886 kb on + strand at 83.887 kb on - strand at 83.937 kb on - strand at 83.954 kb on - strand at 83.954 kb on - strand at 84.006 kb on + strand at 84.073 kb on - strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.133 kb on + strand, within BACOVA_00833 at 84.134 kb on - strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.139 kb on - strand, within BACOVA_00833 at 84.194 kb on + strand, within BACOVA_00833 at 84.200 kb on + strand, within BACOVA_00833 at 84.201 kb on - strand, within BACOVA_00833 at 84.207 kb on - strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.254 kb on - strand, within BACOVA_00833 at 84.259 kb on - strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.296 kb on + strand, within BACOVA_00833 at 84.302 kb on + strand, within BACOVA_00833 at 84.422 kb on + strand, within BACOVA_00833 at 84.423 kb on - strand, within BACOVA_00833 at 84.499 kb on + strand, within BACOVA_00833 at 84.500 kb on - strand, within BACOVA_00833 at 84.563 kb on - strand, within BACOVA_00833 at 84.620 kb on + strand, within BACOVA_00833 at 84.707 kb on + strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.712 kb on - strand, within BACOVA_00833 at 84.730 kb on - strand, within BACOVA_00833 at 84.735 kb on + strand, within BACOVA_00833 at 84.750 kb on - strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.895 kb on + strand, within BACOVA_00833 at 84.896 kb on - strand, within BACOVA_00833 at 84.897 kb on + strand, within BACOVA_00833 at 84.898 kb on - strand, within BACOVA_00833 at 85.010 kb on + strand, within BACOVA_00833 at 85.060 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.117 kb on - strand, within BACOVA_00833 at 85.230 kb on - strand, within BACOVA_00833 at 85.231 kb on + strand, within BACOVA_00833 at 85.231 kb on + strand, within BACOVA_00833 at 85.232 kb on - strand, within BACOVA_00833 at 85.236 kb on + strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.247 kb on + strand, within BACOVA_00833 at 85.248 kb on - strand, within BACOVA_00833 at 85.251 kb on + strand, within BACOVA_00833 at 85.258 kb on - strand, within BACOVA_00833 at 85.259 kb on + strand, within BACOVA_00833 at 85.259 kb on + strand, within BACOVA_00833 at 85.260 kb on - strand, within BACOVA_00833 at 85.260 kb on - strand, within BACOVA_00833 at 85.274 kb on + strand, within BACOVA_00833 at 85.326 kb on + strand, within BACOVA_00833 at 85.334 kb on + strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.366 kb on - strand, within BACOVA_00833 at 85.485 kb on + strand, within BACOVA_00833 at 85.518 kb on + strand, within BACOVA_00833 at 85.603 kb on + strand, within BACOVA_00833 at 85.639 kb on + strand, within BACOVA_00833 at 85.640 kb on - strand, within BACOVA_00833 at 85.765 kb on + strand, within BACOVA_00833 at 85.880 kb on + strand at 85.880 kb on + strand at 85.881 kb on - strand at 85.881 kb on - strand at 85.958 kb on - strand at 85.958 kb on - strand at 85.963 kb on + strand at 85.964 kb on - strand at 86.017 kb on + strand at 86.059 kb on - strand at 86.059 kb on - strand at 86.074 kb on - strand at 86.079 kb on + strand at 86.079 kb on + strand at 86.079 kb on + strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.108 kb on - strand at 86.151 kb on - strand, within BACOVA_00834 at 86.215 kb on - strand, within BACOVA_00834 at 86.231 kb on + strand, within BACOVA_00834 at 86.232 kb on - strand, within BACOVA_00834 at 86.313 kb on - strand, within BACOVA_00834 at 86.330 kb on - strand, within BACOVA_00834 at 86.356 kb on + strand, within BACOVA_00834 at 86.356 kb on + strand, within BACOVA_00834 at 86.369 kb on - strand at 86.370 kb on + strand at 86.371 kb on - strand at 86.371 kb on - strand at 86.371 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.420 kb on - strand at 86.436 kb on + strand at 86.438 kb on + strand at 86.439 kb on - strand at 86.439 kb on - strand at 86.439 kb on - strand at 86.445 kb on - strand at 86.466 kb on - strand at 86.475 kb on - strand at 86.475 kb on - strand at 86.475 kb on - strand at 86.493 kb on + strand at 86.510 kb on - strand at 86.535 kb on - strand at 86.556 kb on + strand at 86.562 kb on + strand at 86.642 kb on + strand, within BACOVA_00835 at 86.643 kb on - strand, within BACOVA_00835 at 86.643 kb on - strand, within BACOVA_00835 at 86.678 kb on + strand, within BACOVA_00835 at 86.679 kb on - strand, within BACOVA_00835 at 86.710 kb on - strand, within BACOVA_00835 at 86.721 kb on + strand, within BACOVA_00835 at 86.782 kb on + strand, within BACOVA_00835 at 86.783 kb on - strand, within BACOVA_00835 at 86.783 kb on - strand, within BACOVA_00835 at 86.790 kb on + strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.818 kb on + strand, within BACOVA_00835 at 86.823 kb on + strand, within BACOVA_00835 at 86.824 kb on - strand, within BACOVA_00835 at 86.847 kb on + strand, within BACOVA_00835 at 86.861 kb on + strand, within BACOVA_00835 at 86.891 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.917 kb on - strand, within BACOVA_00835 at 86.974 kb on - strand, within BACOVA_00835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 82,877 - BACOVA_00831 0.48 -1.2 82,900 + BACOVA_00831 0.52 -0.4 82,915 + BACOVA_00831 0.54 +0.4 82,990 + BACOVA_00831 0.67 +1.2 83,008 - BACOVA_00831 0.70 -0.6 83,008 - BACOVA_00831 0.70 -1.6 83,008 - BACOVA_00831 0.70 -0.5 83,011 - BACOVA_00831 0.70 -1.6 83,062 - BACOVA_00831 0.79 -0.1 83,065 + BACOVA_00831 0.79 +0.9 83,066 - BACOVA_00831 0.80 +1.4 83,066 - BACOVA_00831 0.80 -0.2 83,066 - BACOVA_00831 0.80 -0.1 83,066 - BACOVA_00831 0.80 -0.0 83,080 + BACOVA_00831 0.82 -1.9 83,081 - BACOVA_00831 0.82 +0.4 83,082 + BACOVA_00831 0.82 +0.4 83,083 - BACOVA_00831 0.82 -0.8 83,083 - BACOVA_00831 0.82 +1.7 83,083 - BACOVA_00831 0.82 -0.9 83,083 - BACOVA_00831 0.82 -0.8 83,086 + BACOVA_00831 0.83 -1.4 83,087 - BACOVA_00831 0.83 -0.4 83,087 - BACOVA_00831 0.83 +0.7 83,087 - BACOVA_00831 0.83 -1.8 83,087 - BACOVA_00831 0.83 -0.8 83,146 + +0.3 83,148 + -2.6 83,189 - +0.6 83,213 + +1.1 83,241 + -1.0 83,241 + -0.4 83,242 - +2.9 83,242 - +1.7 83,242 - +0.7 83,246 - +1.4 83,276 + -0.4 83,281 - +1.2 83,344 + -1.4 83,352 + -1.8 83,389 + +1.9 83,416 - BACOVA_00832 0.13 -1.9 83,489 + BACOVA_00832 0.28 -0.1 83,489 + BACOVA_00832 0.28 +0.9 83,490 - BACOVA_00832 0.28 -0.8 83,490 - BACOVA_00832 0.28 -0.5 83,509 + BACOVA_00832 0.32 -2.3 83,510 - BACOVA_00832 0.32 -1.3 83,510 - BACOVA_00832 0.32 +0.1 83,510 - BACOVA_00832 0.32 -0.0 83,538 + BACOVA_00832 0.38 -0.2 83,538 + BACOVA_00832 0.38 +1.0 83,539 - BACOVA_00832 0.38 -2.2 83,539 - BACOVA_00832 0.38 +0.5 83,585 - BACOVA_00832 0.48 -1.5 83,588 - BACOVA_00832 0.48 +0.4 83,617 + BACOVA_00832 0.54 -2.2 83,618 - BACOVA_00832 0.54 -2.2 83,618 - BACOVA_00832 0.54 -0.9 83,794 + -0.4 83,795 - -0.2 83,795 - -1.1 83,873 - +1.9 83,886 + -0.3 83,886 + -1.0 83,887 - +1.3 83,937 - +1.1 83,954 - -1.4 83,954 - +0.5 84,006 + -1.0 84,073 - BACOVA_00833 0.11 -0.6 84,111 + BACOVA_00833 0.13 +0.7 84,111 + BACOVA_00833 0.13 +1.1 84,112 - BACOVA_00833 0.13 -1.7 84,112 - BACOVA_00833 0.13 -1.1 84,133 + BACOVA_00833 0.14 -0.8 84,134 - BACOVA_00833 0.14 +0.4 84,138 + BACOVA_00833 0.14 +2.4 84,138 + BACOVA_00833 0.14 +0.4 84,139 - BACOVA_00833 0.14 -1.8 84,194 + BACOVA_00833 0.16 -0.3 84,200 + BACOVA_00833 0.17 -0.6 84,201 - BACOVA_00833 0.17 +0.1 84,207 - BACOVA_00833 0.17 +0.9 84,253 + BACOVA_00833 0.19 -0.2 84,253 + BACOVA_00833 0.19 -0.8 84,254 - BACOVA_00833 0.19 -0.5 84,259 - BACOVA_00833 0.19 +0.1 84,277 + BACOVA_00833 0.20 -0.5 84,277 + BACOVA_00833 0.20 -1.0 84,296 + BACOVA_00833 0.21 +0.8 84,302 + BACOVA_00833 0.21 -1.8 84,422 + BACOVA_00833 0.27 +0.1 84,423 - BACOVA_00833 0.27 +0.6 84,499 + BACOVA_00833 0.31 -1.2 84,500 - BACOVA_00833 0.31 -0.4 84,563 - BACOVA_00833 0.34 -3.4 84,620 + BACOVA_00833 0.36 -1.2 84,707 + BACOVA_00833 0.40 +1.1 84,708 - BACOVA_00833 0.40 -0.4 84,708 - BACOVA_00833 0.40 -2.6 84,712 - BACOVA_00833 0.40 -0.5 84,730 - BACOVA_00833 0.41 -1.2 84,735 + BACOVA_00833 0.41 +1.7 84,750 - BACOVA_00833 0.42 -0.8 84,791 + BACOVA_00833 0.44 -1.7 84,791 + BACOVA_00833 0.44 -0.3 84,791 + BACOVA_00833 0.44 -1.0 84,895 + BACOVA_00833 0.49 +1.0 84,896 - BACOVA_00833 0.49 -1.2 84,897 + BACOVA_00833 0.49 +0.5 84,898 - BACOVA_00833 0.49 -0.2 85,010 + BACOVA_00833 0.54 -0.3 85,060 + BACOVA_00833 0.57 +1.7 85,094 + BACOVA_00833 0.58 -0.6 85,094 + BACOVA_00833 0.58 -0.1 85,094 + BACOVA_00833 0.58 -2.2 85,094 + BACOVA_00833 0.58 +0.4 85,094 + BACOVA_00833 0.58 -0.4 85,095 - BACOVA_00833 0.58 +0.7 85,095 - BACOVA_00833 0.58 -2.2 85,095 - BACOVA_00833 0.58 +0.3 85,117 - BACOVA_00833 0.59 +0.0 85,230 - BACOVA_00833 0.64 -0.6 85,231 + BACOVA_00833 0.64 -0.6 85,231 + BACOVA_00833 0.64 -0.4 85,232 - BACOVA_00833 0.64 -2.2 85,236 + BACOVA_00833 0.65 +0.5 85,237 - BACOVA_00833 0.65 -0.9 85,237 - BACOVA_00833 0.65 -0.2 85,237 - BACOVA_00833 0.65 -0.9 85,247 + BACOVA_00833 0.65 +1.3 85,248 - BACOVA_00833 0.65 -0.1 85,251 + BACOVA_00833 0.65 +0.7 85,258 - BACOVA_00833 0.66 +0.2 85,259 + BACOVA_00833 0.66 +1.0 85,259 + BACOVA_00833 0.66 +0.5 85,260 - BACOVA_00833 0.66 -0.4 85,260 - BACOVA_00833 0.66 -0.1 85,274 + BACOVA_00833 0.66 +0.4 85,326 + BACOVA_00833 0.69 -1.2 85,334 + BACOVA_00833 0.69 +1.2 85,335 - BACOVA_00833 0.69 +1.5 85,335 - BACOVA_00833 0.69 -0.4 85,335 - BACOVA_00833 0.69 +0.2 85,335 - BACOVA_00833 0.69 -0.3 85,335 - BACOVA_00833 0.69 +0.5 85,366 - BACOVA_00833 0.71 +0.4 85,485 + BACOVA_00833 0.76 -0.0 85,518 + BACOVA_00833 0.78 +0.4 85,603 + BACOVA_00833 0.82 +1.4 85,639 + BACOVA_00833 0.83 +0.5 85,640 - BACOVA_00833 0.83 -0.1 85,765 + BACOVA_00833 0.89 -0.8 85,880 + -0.1 85,880 + -1.1 85,881 - -1.1 85,881 - -0.5 85,958 - +0.7 85,958 - +0.9 85,963 + -0.8 85,964 - -1.1 86,017 + -0.0 86,059 - -1.3 86,059 - -1.3 86,074 - -1.0 86,079 + -0.3 86,079 + -1.3 86,079 + +0.4 86,084 - +0.5 86,084 - -0.7 86,084 - -1.3 86,084 - -0.4 86,108 - -0.1 86,151 - BACOVA_00834 0.21 -1.4 86,215 - BACOVA_00834 0.41 -0.0 86,231 + BACOVA_00834 0.46 -0.7 86,232 - BACOVA_00834 0.46 -1.6 86,313 - BACOVA_00834 0.72 -0.8 86,330 - BACOVA_00834 0.77 +1.0 86,356 + BACOVA_00834 0.86 -0.1 86,356 + BACOVA_00834 0.86 +0.4 86,369 - -0.9 86,370 + -0.9 86,371 - +0.8 86,371 - -0.9 86,371 - -1.4 86,373 - -0.6 86,373 - +0.2 86,373 - -0.6 86,373 - -0.1 86,373 - -0.0 86,373 - -2.0 86,374 + -0.1 86,374 + -0.5 86,374 + -0.3 86,374 + -0.9 86,420 - -2.7 86,436 + -1.2 86,438 + -0.6 86,439 - -0.4 86,439 - +0.1 86,439 - +0.4 86,445 - +0.8 86,466 - -1.9 86,475 - -1.3 86,475 - -0.6 86,475 - -1.4 86,493 + -0.9 86,510 - -0.3 86,535 - -0.6 86,556 + +0.2 86,562 + +0.4 86,642 + BACOVA_00835 0.18 +0.0 86,643 - BACOVA_00835 0.18 -0.2 86,643 - BACOVA_00835 0.18 +0.3 86,678 + BACOVA_00835 0.21 +0.4 86,679 - BACOVA_00835 0.22 -0.5 86,710 - BACOVA_00835 0.25 -1.7 86,721 + BACOVA_00835 0.26 -1.5 86,782 + BACOVA_00835 0.32 +1.2 86,783 - BACOVA_00835 0.32 -0.8 86,783 - BACOVA_00835 0.32 -1.4 86,790 + BACOVA_00835 0.33 -0.8 86,791 - BACOVA_00835 0.33 -0.3 86,791 - BACOVA_00835 0.33 -0.8 86,791 - BACOVA_00835 0.33 -0.2 86,791 - BACOVA_00835 0.33 -0.4 86,818 + BACOVA_00835 0.36 -1.8 86,823 + BACOVA_00835 0.37 +1.1 86,824 - BACOVA_00835 0.37 -0.4 86,847 + BACOVA_00835 0.39 -1.0 86,861 + BACOVA_00835 0.41 -0.7 86,891 + BACOVA_00835 0.44 -0.8 86,916 + BACOVA_00835 0.46 -0.1 86,916 + BACOVA_00835 0.46 -1.1 86,916 + BACOVA_00835 0.46 -1.1 86,917 - BACOVA_00835 0.46 -0.5 86,974 - BACOVA_00835 0.52 +0.4
Or see this region's nucleotide sequence