Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides BACOVA_00585 and BACOVA_00586 overlap by 26 nucleotides
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306
_00586
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584 at 19.674 kb on + strand at 19.687 kb on + strand at 19.738 kb on - strand at 19.739 kb on + strand at 19.739 kb on + strand at 19.740 kb on - strand at 19.740 kb on - strand at 19.766 kb on + strand at 19.820 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 20.049 kb on - strand at 20.076 kb on - strand at 20.076 kb on - strand at 20.122 kb on + strand at 20.122 kb on + strand at 20.136 kb on + strand at 20.186 kb on + strand at 20.303 kb on + strand at 20.339 kb on + strand at 20.397 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.499 kb on + strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.566 kb on - strand, within BACOVA_00586 at 20.571 kb on + strand, within BACOVA_00586 at 20.611 kb on - strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.636 kb on - strand, within BACOVA_00586 at 20.640 kb on + strand, within BACOVA_00586 at 20.684 kb on + strand, within BACOVA_00586 at 20.694 kb on - strand, within BACOVA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 17,668 + BACOVA_00582 0.81 -0.7 17,669 - BACOVA_00582 0.82 +0.8 17,669 - BACOVA_00582 0.82 -0.7 17,669 - BACOVA_00582 0.82 -1.0 17,669 - BACOVA_00582 0.82 -0.8 17,719 + BACOVA_00582 0.84 +0.9 17,724 + BACOVA_00582 0.84 +0.8 17,783 - BACOVA_00582 0.87 -0.4 17,786 - BACOVA_00582 0.87 +0.0 17,844 - BACOVA_00582 0.89 -0.3 17,848 + BACOVA_00582 0.89 -1.5 17,849 - BACOVA_00582 0.90 +0.0 17,873 - +0.6 17,877 + -2.5 17,877 + -2.0 17,885 + +0.6 17,923 + +0.0 17,923 + +0.5 17,923 + +0.0 17,923 + -1.3 17,943 + -1.7 17,984 - -0.2 18,017 - +0.6 18,083 + -0.5 18,087 + -1.5 18,087 + -2.7 18,088 - +0.2 18,090 - +1.0 18,107 - -0.8 18,107 - +0.7 18,160 + BACOVA_00583 0.12 +0.2 18,179 + BACOVA_00583 0.16 +1.3 18,199 + BACOVA_00583 0.19 -0.4 18,219 + BACOVA_00583 0.23 -0.7 18,243 + BACOVA_00583 0.27 -1.8 18,244 - BACOVA_00583 0.27 -1.1 18,297 - BACOVA_00583 0.36 -0.6 18,297 - BACOVA_00583 0.36 -0.3 18,297 - BACOVA_00583 0.36 -0.5 18,397 - BACOVA_00583 0.54 +0.3 18,488 + BACOVA_00583 0.69 +1.6 18,517 + BACOVA_00583 0.75 -1.2 18,553 + BACOVA_00583 0.81 -1.4 18,554 - BACOVA_00583 0.81 -0.5 18,557 + BACOVA_00583 0.82 +0.2 18,575 + BACOVA_00583 0.85 +0.6 18,576 - BACOVA_00583 0.85 -0.9 18,588 - BACOVA_00583 0.87 -0.4 18,588 - BACOVA_00583 0.87 +1.1 18,622 + -1.0 18,623 - -0.8 18,626 + -0.1 18,667 - -1.1 18,667 - +1.0 18,667 - -1.1 18,705 + -2.5 18,705 + +0.6 18,734 + +0.8 18,743 - +0.7 18,870 + BACOVA_00584 0.21 -1.9 18,870 + BACOVA_00584 0.21 +0.2 18,870 + BACOVA_00584 0.21 -0.2 18,912 + BACOVA_00584 0.24 +0.0 18,928 - BACOVA_00584 0.26 -1.2 18,928 - BACOVA_00584 0.26 -0.7 18,996 + BACOVA_00584 0.32 -0.5 19,001 + BACOVA_00584 0.33 +0.8 19,002 - BACOVA_00584 0.33 -1.4 19,057 - BACOVA_00584 0.38 -2.1 19,071 - BACOVA_00584 0.39 +0.8 19,071 - BACOVA_00584 0.39 -0.0 19,113 + BACOVA_00584 0.43 +1.0 19,114 - BACOVA_00584 0.43 +0.2 19,134 + BACOVA_00584 0.45 -0.8 19,135 - BACOVA_00584 0.45 -1.4 19,148 + BACOVA_00584 0.46 +1.0 19,154 - BACOVA_00584 0.47 +0.3 19,167 - BACOVA_00584 0.48 +1.5 19,179 - BACOVA_00584 0.49 -2.5 19,252 - BACOVA_00584 0.56 -0.8 19,326 + BACOVA_00584 0.62 -0.1 19,505 - BACOVA_00584 0.79 +0.0 19,530 + BACOVA_00584 0.81 +0.0 19,542 + BACOVA_00584 0.82 -1.1 19,570 + BACOVA_00584 0.85 +0.0 19,572 + BACOVA_00584 0.85 -0.5 19,573 - BACOVA_00584 0.85 +0.1 19,573 - BACOVA_00584 0.85 -2.1 19,576 - BACOVA_00584 0.85 -0.4 19,674 + -0.7 19,687 + +0.1 19,738 - +0.4 19,739 + -0.4 19,739 + -0.8 19,740 - -0.7 19,740 - -1.0 19,766 + -0.6 19,820 + BACOVA_00585 0.25 -0.6 19,892 + BACOVA_00585 0.48 -1.0 19,892 + BACOVA_00585 0.48 -0.2 20,049 - -1.0 20,076 - +0.8 20,076 - -1.6 20,122 + +0.6 20,122 + +0.5 20,136 + +0.1 20,186 + -0.3 20,303 + +0.6 20,339 + -1.5 20,397 - BACOVA_00586 0.11 +1.4 20,496 - BACOVA_00586 0.14 +1.1 20,496 - BACOVA_00586 0.14 +1.0 20,496 - BACOVA_00586 0.14 +0.3 20,499 + BACOVA_00586 0.14 -1.4 20,500 - BACOVA_00586 0.14 +0.3 20,500 - BACOVA_00586 0.14 +0.6 20,566 - BACOVA_00586 0.16 -0.3 20,571 + BACOVA_00586 0.17 +1.5 20,611 - BACOVA_00586 0.18 +0.1 20,619 + BACOVA_00586 0.18 -0.6 20,619 + BACOVA_00586 0.18 -0.6 20,619 + BACOVA_00586 0.18 +1.6 20,634 - BACOVA_00586 0.19 -1.1 20,634 - BACOVA_00586 0.19 -0.5 20,635 + BACOVA_00586 0.19 +0.0 20,635 + BACOVA_00586 0.19 -0.2 20,636 - BACOVA_00586 0.19 -0.3 20,640 + BACOVA_00586 0.19 -1.2 20,684 + BACOVA_00586 0.20 -1.2 20,694 - BACOVA_00586 0.20 +1.0
Or see this region's nucleotide sequence