Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00579 and BACOVA_00580 are separated by 152 nucleotides BACOVA_00580 and BACOVA_00581 are separated by 137 nucleotides BACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides
BACOVA_00579: BACOVA_00579 - VirE N-terminal domain protein, at 12,217 to 14,544
_00579
BACOVA_00580: BACOVA_00580 - hypothetical protein, at 14,697 to 15,056
_00580
BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700
_00581
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
Position (kb)
15
16 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 14.287 kb on - strand, within BACOVA_00579 at 14.287 kb on - strand, within BACOVA_00579 at 14.416 kb on - strand at 14.422 kb on + strand at 14.435 kb on + strand at 14.436 kb on - strand at 14.436 kb on - strand at 14.436 kb on - strand at 14.455 kb on - strand at 14.455 kb on - strand at 14.458 kb on - strand at 14.533 kb on + strand at 14.546 kb on + strand at 14.546 kb on + strand at 14.547 kb on - strand at 14.571 kb on + strand at 14.587 kb on - strand at 14.630 kb on + strand at 14.638 kb on + strand at 14.670 kb on - strand at 14.688 kb on + strand at 14.821 kb on + strand, within BACOVA_00580 at 14.893 kb on - strand, within BACOVA_00580 at 14.919 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.975 kb on + strand, within BACOVA_00580 at 15.026 kb on - strand at 15.032 kb on - strand at 15.242 kb on + strand at 15.269 kb on - strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.271 kb on - strand, within BACOVA_00581 at 15.300 kb on + strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.304 kb on + strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.517 kb on + strand, within BACOVA_00581 at 15.522 kb on + strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.530 kb on - strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.699 kb on - strand at 15.763 kb on - strand at 15.766 kb on - strand at 15.778 kb on - strand at 15.806 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.827 kb on - strand at 15.830 kb on + strand at 15.830 kb on + strand at 15.831 kb on - strand at 15.832 kb on + strand at 15.833 kb on - strand at 15.833 kb on - strand at 15.837 kb on + strand at 15.846 kb on + strand at 15.847 kb on - strand at 15.952 kb on - strand at 15.952 kb on - strand at 15.954 kb on + strand at 15.956 kb on + strand at 16.012 kb on + strand at 16.017 kb on + strand at 16.018 kb on - strand at 16.022 kb on - strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.054 kb on + strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.096 kb on + strand, within BACOVA_00582 at 16.097 kb on - strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.177 kb on + strand, within BACOVA_00582 at 16.191 kb on + strand, within BACOVA_00582 at 16.192 kb on - strand, within BACOVA_00582 at 16.325 kb on - strand, within BACOVA_00582 at 16.426 kb on + strand, within BACOVA_00582 at 16.542 kb on + strand, within BACOVA_00582 at 16.543 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.628 kb on + strand, within BACOVA_00582 at 16.691 kb on + strand, within BACOVA_00582
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 14,287 - BACOVA_00579 0.89 -0.7 14,287 - BACOVA_00579 0.89 -0.7 14,416 - +2.6 14,422 + +2.1 14,435 + -0.8 14,436 - -0.8 14,436 - +0.7 14,436 - +0.0 14,455 - +1.3 14,455 - -1.5 14,458 - +0.5 14,533 + -1.0 14,546 + -0.7 14,546 + +0.3 14,547 - -0.3 14,571 + -0.5 14,587 - +0.3 14,630 + -0.5 14,638 + -2.0 14,670 - +0.8 14,688 + +0.5 14,821 + BACOVA_00580 0.34 +0.5 14,893 - BACOVA_00580 0.54 -0.1 14,919 - BACOVA_00580 0.62 -2.5 14,945 - BACOVA_00580 0.69 +0.1 14,945 - BACOVA_00580 0.69 -0.4 14,975 + BACOVA_00580 0.77 -1.5 15,026 - +0.3 15,032 - +1.6 15,242 + -1.0 15,269 - BACOVA_00581 0.15 +0.9 15,270 + BACOVA_00581 0.15 -0.4 15,270 + BACOVA_00581 0.15 +1.0 15,270 + BACOVA_00581 0.15 -0.9 15,271 - BACOVA_00581 0.15 +1.0 15,300 + BACOVA_00581 0.21 -1.5 15,301 - BACOVA_00581 0.21 -0.4 15,301 - BACOVA_00581 0.21 +0.6 15,304 + BACOVA_00581 0.22 +0.3 15,473 - BACOVA_00581 0.55 -0.5 15,473 - BACOVA_00581 0.55 +0.2 15,497 + BACOVA_00581 0.60 -1.2 15,497 + BACOVA_00581 0.60 +0.0 15,497 + BACOVA_00581 0.60 +0.1 15,497 + BACOVA_00581 0.60 -1.1 15,498 - BACOVA_00581 0.60 -1.0 15,498 - BACOVA_00581 0.60 -0.7 15,517 + BACOVA_00581 0.64 -1.7 15,522 + BACOVA_00581 0.65 +1.8 15,523 - BACOVA_00581 0.65 -0.6 15,523 - BACOVA_00581 0.65 -0.9 15,523 - BACOVA_00581 0.65 -1.2 15,530 - BACOVA_00581 0.66 -0.4 15,588 + BACOVA_00581 0.78 -0.2 15,588 + BACOVA_00581 0.78 +0.4 15,699 - -1.1 15,763 - +0.3 15,766 - -2.7 15,778 - -0.2 15,806 + +0.1 15,826 + -2.3 15,826 + +0.4 15,826 + +0.1 15,827 - +0.8 15,830 + -0.3 15,830 + +0.0 15,831 - +0.1 15,832 + -1.5 15,833 - -1.0 15,833 - +1.9 15,837 + +1.9 15,846 + +0.0 15,847 - -0.6 15,952 - +0.0 15,952 - +0.7 15,954 + -0.4 15,956 + +1.6 16,012 + -2.7 16,017 + -0.0 16,018 - +0.0 16,022 - +0.3 16,040 + -0.5 16,040 + -0.4 16,040 + +0.2 16,041 - +1.8 16,041 - -0.5 16,041 - -1.7 16,041 - -0.4 16,054 + BACOVA_00582 0.10 +0.2 16,055 - BACOVA_00582 0.10 +1.4 16,055 - BACOVA_00582 0.10 -0.5 16,096 + BACOVA_00582 0.12 -1.0 16,097 - BACOVA_00582 0.12 -0.2 16,114 + BACOVA_00582 0.13 +1.0 16,114 + BACOVA_00582 0.13 -0.2 16,177 + BACOVA_00582 0.15 -0.2 16,191 + BACOVA_00582 0.16 -0.5 16,192 - BACOVA_00582 0.16 -0.4 16,325 - BACOVA_00582 0.22 +0.4 16,426 + BACOVA_00582 0.27 -1.4 16,542 + BACOVA_00582 0.32 +0.7 16,543 - BACOVA_00582 0.32 -0.5 16,604 - BACOVA_00582 0.34 -2.4 16,604 - BACOVA_00582 0.34 -0.7 16,626 + BACOVA_00582 0.35 -0.5 16,626 + BACOVA_00582 0.35 +0.5 16,628 + BACOVA_00582 0.35 +1.0 16,691 + BACOVA_00582 0.38 -0.2
Or see this region's nucleotide sequence