Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00091

Experiment: D-Galactose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00088 and BACOVA_00089 overlap by 1 nucleotidesBACOVA_00089 and BACOVA_00090 overlap by 4 nucleotidesBACOVA_00090 and BACOVA_00091 are separated by 78 nucleotidesBACOVA_00091 and BACOVA_00092 overlap by 24 nucleotides BACOVA_00088: BACOVA_00088 - HipA-like C-terminal domain protein, at 2,399 to 3,337 _00088 BACOVA_00089: BACOVA_00089 - HipA domain protein, at 3,337 to 3,663 _00089 BACOVA_00090: BACOVA_00090 - transcriptional regulator, y4mF family, at 3,660 to 3,878 _00090 BACOVA_00091: BACOVA_00091 - hypothetical protein, at 3,957 to 4,064 _00091 BACOVA_00092: BACOVA_00092 - catalase, at 4,041 to 5,501 _00092 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.076 kb on + strand, within BACOVA_00088at 3.078 kb on + strand, within BACOVA_00088at 3.078 kb on + strand, within BACOVA_00088at 3.079 kb on - strand, within BACOVA_00088at 3.079 kb on - strand, within BACOVA_00088at 3.100 kb on + strand, within BACOVA_00088at 3.134 kb on + strand, within BACOVA_00088at 3.135 kb on - strand, within BACOVA_00088at 3.135 kb on - strand, within BACOVA_00088at 3.166 kb on + strand, within BACOVA_00088at 3.209 kb on - strand, within BACOVA_00088at 3.223 kb on + strand, within BACOVA_00088at 3.224 kb on - strand, within BACOVA_00088at 3.230 kb on + strand, within BACOVA_00088at 3.231 kb on - strand, within BACOVA_00088at 3.258 kb on - strandat 3.318 kb on + strandat 3.320 kb on + strandat 3.320 kb on + strandat 3.339 kb on - strandat 3.349 kb on + strandat 3.366 kb on + strandat 3.412 kb on - strand, within BACOVA_00089at 3.451 kb on - strand, within BACOVA_00089at 3.474 kb on + strand, within BACOVA_00089at 3.474 kb on + strand, within BACOVA_00089at 3.474 kb on + strand, within BACOVA_00089at 3.475 kb on - strand, within BACOVA_00089at 3.499 kb on + strand, within BACOVA_00089at 3.500 kb on - strand, within BACOVA_00089at 3.502 kb on + strand, within BACOVA_00089at 3.510 kb on + strand, within BACOVA_00089at 3.510 kb on + strand, within BACOVA_00089at 3.510 kb on + strand, within BACOVA_00089at 3.511 kb on - strand, within BACOVA_00089at 3.511 kb on - strand, within BACOVA_00089at 3.512 kb on + strand, within BACOVA_00089at 3.513 kb on - strand, within BACOVA_00089at 3.546 kb on + strand, within BACOVA_00089at 3.547 kb on - strand, within BACOVA_00089at 3.572 kb on + strand, within BACOVA_00089at 3.597 kb on - strand, within BACOVA_00089at 3.644 kb on + strandat 3.644 kb on + strandat 3.647 kb on - strandat 3.664 kb on - strandat 3.664 kb on - strandat 3.687 kb on + strand, within BACOVA_00090at 3.978 kb on - strand, within BACOVA_00091at 4.015 kb on + strand, within BACOVA_00091at 4.015 kb on + strand, within BACOVA_00091at 4.016 kb on - strand, within BACOVA_00091at 4.062 kb on + strandat 4.063 kb on - strandat 4.063 kb on - strandat 4.100 kb on - strandat 4.117 kb on + strandat 4.191 kb on + strand, within BACOVA_00092at 4.192 kb on - strand, within BACOVA_00092at 4.192 kb on - strand, within BACOVA_00092at 4.224 kb on + strand, within BACOVA_00092at 4.225 kb on - strand, within BACOVA_00092at 4.242 kb on - strand, within BACOVA_00092at 4.244 kb on - strand, within BACOVA_00092at 4.246 kb on + strand, within BACOVA_00092at 4.247 kb on - strand, within BACOVA_00092at 4.247 kb on - strand, within BACOVA_00092at 4.274 kb on - strand, within BACOVA_00092at 4.274 kb on - strand, within BACOVA_00092at 4.280 kb on - strand, within BACOVA_00092at 4.280 kb on - strand, within BACOVA_00092at 4.280 kb on - strand, within BACOVA_00092at 4.280 kb on - strand, within BACOVA_00092at 4.376 kb on - strand, within BACOVA_00092at 4.493 kb on - strand, within BACOVA_00092at 4.500 kb on + strand, within BACOVA_00092at 4.500 kb on + strand, within BACOVA_00092at 4.546 kb on - strand, within BACOVA_00092at 4.546 kb on - strand, within BACOVA_00092at 4.664 kb on + strand, within BACOVA_00092at 4.664 kb on + strand, within BACOVA_00092at 4.853 kb on + strand, within BACOVA_00092at 4.854 kb on - strand, within BACOVA_00092at 4.877 kb on + strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.898 kb on + strand, within BACOVA_00092at 4.905 kb on - strand, within BACOVA_00092at 4.906 kb on + strand, within BACOVA_00092at 4.906 kb on + strand, within BACOVA_00092at 4.940 kb on - strand, within BACOVA_00092at 4.953 kb on - strand, within BACOVA_00092at 4.974 kb on - strand, within BACOVA_00092at 4.976 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.987 kb on - strand, within BACOVA_00092at 5.022 kb on - strand, within BACOVA_00092

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C)
remove
3,076 + BACOVA_00088 0.72 -0.8
3,078 + BACOVA_00088 0.72 +0.2
3,078 + BACOVA_00088 0.72 -0.2
3,079 - BACOVA_00088 0.72 -1.1
3,079 - BACOVA_00088 0.72 +0.3
3,100 + BACOVA_00088 0.75 +0.0
3,134 + BACOVA_00088 0.78 +1.7
3,135 - BACOVA_00088 0.78 -0.7
3,135 - BACOVA_00088 0.78 -0.2
3,166 + BACOVA_00088 0.82 +1.5
3,209 - BACOVA_00088 0.86 +0.8
3,223 + BACOVA_00088 0.88 -0.9
3,224 - BACOVA_00088 0.88 +0.5
3,230 + BACOVA_00088 0.88 +0.7
3,231 - BACOVA_00088 0.89 -1.5
3,258 - -0.5
3,318 + -0.5
3,320 + +1.1
3,320 + +1.4
3,339 - -0.7
3,349 + -1.0
3,366 + +0.3
3,412 - BACOVA_00089 0.23 +0.5
3,451 - BACOVA_00089 0.35 -0.0
3,474 + BACOVA_00089 0.42 +1.1
3,474 + BACOVA_00089 0.42 +0.1
3,474 + BACOVA_00089 0.42 -0.6
3,475 - BACOVA_00089 0.42 -0.4
3,499 + BACOVA_00089 0.50 -2.3
3,500 - BACOVA_00089 0.50 +1.3
3,502 + BACOVA_00089 0.50 +0.6
3,510 + BACOVA_00089 0.53 +0.4
3,510 + BACOVA_00089 0.53 +0.6
3,510 + BACOVA_00089 0.53 +0.4
3,511 - BACOVA_00089 0.53 -0.5
3,511 - BACOVA_00089 0.53 -0.3
3,512 + BACOVA_00089 0.54 -1.2
3,513 - BACOVA_00089 0.54 +0.8
3,546 + BACOVA_00089 0.64 +0.9
3,547 - BACOVA_00089 0.64 -1.4
3,572 + BACOVA_00089 0.72 -1.4
3,597 - BACOVA_00089 0.80 -0.9
3,644 + +0.5
3,644 + -0.7
3,647 - -0.1
3,664 - -1.7
3,664 - -0.1
3,687 + BACOVA_00090 0.12 -1.1
3,978 - BACOVA_00091 0.19 -1.2
4,015 + BACOVA_00091 0.54 -0.7
4,015 + BACOVA_00091 0.54 -3.0
4,016 - BACOVA_00091 0.55 -2.0
4,062 + +0.4
4,063 - +1.2
4,063 - +0.1
4,100 - -0.3
4,117 + -0.5
4,191 + BACOVA_00092 0.10 -0.1
4,192 - BACOVA_00092 0.10 +0.1
4,192 - BACOVA_00092 0.10 -0.6
4,224 + BACOVA_00092 0.13 -0.1
4,225 - BACOVA_00092 0.13 +1.1
4,242 - BACOVA_00092 0.14 +0.0
4,244 - BACOVA_00092 0.14 -0.4
4,246 + BACOVA_00092 0.14 -1.5
4,247 - BACOVA_00092 0.14 -0.1
4,247 - BACOVA_00092 0.14 +0.8
4,274 - BACOVA_00092 0.16 +1.7
4,274 - BACOVA_00092 0.16 -0.6
4,280 - BACOVA_00092 0.16 -0.4
4,280 - BACOVA_00092 0.16 -0.7
4,280 - BACOVA_00092 0.16 +2.0
4,280 - BACOVA_00092 0.16 +0.5
4,376 - BACOVA_00092 0.23 -0.5
4,493 - BACOVA_00092 0.31 -0.1
4,500 + BACOVA_00092 0.31 +0.7
4,500 + BACOVA_00092 0.31 +0.5
4,546 - BACOVA_00092 0.35 -0.1
4,546 - BACOVA_00092 0.35 -0.9
4,664 + BACOVA_00092 0.43 +0.4
4,664 + BACOVA_00092 0.43 +0.5
4,853 + BACOVA_00092 0.56 -1.0
4,854 - BACOVA_00092 0.56 -0.2
4,877 + BACOVA_00092 0.57 -0.5
4,878 - BACOVA_00092 0.57 +0.5
4,878 - BACOVA_00092 0.57 -0.2
4,878 - BACOVA_00092 0.57 +0.2
4,898 + BACOVA_00092 0.59 +1.3
4,905 - BACOVA_00092 0.59 +0.4
4,906 + BACOVA_00092 0.59 -1.0
4,906 + BACOVA_00092 0.59 +1.5
4,940 - BACOVA_00092 0.62 +0.7
4,953 - BACOVA_00092 0.62 +0.1
4,974 - BACOVA_00092 0.64 -1.3
4,976 + BACOVA_00092 0.64 -0.6
4,986 + BACOVA_00092 0.65 +0.0
4,986 + BACOVA_00092 0.65 -0.3
4,986 + BACOVA_00092 0.65 -0.2
4,987 - BACOVA_00092 0.65 +0.8
5,022 - BACOVA_00092 0.67 +0.6

Or see this region's nucleotide sequence