Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15890

Experiment: R2A_PIPES pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.5
3,467,900	-				+0.6
3,468,149	+		OKGIIK_15880	0.41	-2.2
3,468,192	+		OKGIIK_15880	0.54	+0.4
3,468,193	-		OKGIIK_15880	0.54	-0.8
3,468,193	-		OKGIIK_15880	0.54	-1.1
3,468,193	-		OKGIIK_15880	0.54	-0.6
3,468,193	-		OKGIIK_15880	0.54	+0.4
3,468,193	-		OKGIIK_15880	0.54	+0.1
3,468,193	-		OKGIIK_15880	0.54	-0.1
3,468,245	+		OKGIIK_15880	0.70	-1.8
3,468,246	-		OKGIIK_15880	0.71	-0.1
3,468,246	-		OKGIIK_15880	0.71	-0.8
3,468,246	-		OKGIIK_15880	0.71	-0.6
3,468,246	-		OKGIIK_15880	0.71	-1.1
3,468,344	-				-0.2
3,468,344	-				+0.7
3,468,392	+		OKGIIK_15885	0.10	-0.8
3,468,393	-		OKGIIK_15885	0.10	-1.8
3,468,417	+		OKGIIK_15885	0.16	+1.2
3,468,437	-		OKGIIK_15885	0.20	+1.2
3,468,575	+		OKGIIK_15885	0.49	-1.7
3,468,575	+		OKGIIK_15885	0.49	-1.3
3,468,575	+		OKGIIK_15885	0.49	+0.6
3,468,576	-		OKGIIK_15885	0.50	+0.1
3,468,576	-		OKGIIK_15885	0.50	-0.2
3,468,576	-		OKGIIK_15885	0.50	-1.4
3,468,582	+		OKGIIK_15885	0.51	+1.5
3,468,582	+		OKGIIK_15885	0.51	-0.4
3,468,582	+		OKGIIK_15885	0.51	-0.5
3,468,582	+		OKGIIK_15885	0.51	-0.2
3,468,583	-		OKGIIK_15885	0.51	-0.8
3,468,583	-		OKGIIK_15885	0.51	-0.1
3,468,626	+		OKGIIK_15885	0.60	+0.3
3,468,626	+		OKGIIK_15885	0.60	-0.0
3,468,626	+		OKGIIK_15885	0.60	+0.2
3,468,626	+		OKGIIK_15885	0.60	-1.3
3,468,626	+		OKGIIK_15885	0.60	+1.0
3,468,626	+		OKGIIK_15885	0.60	-0.4
3,468,626	+		OKGIIK_15885	0.60	+0.1
3,468,626	+		OKGIIK_15885	0.60	-3.4
3,468,627	-		OKGIIK_15885	0.60	-1.0
3,468,627	-		OKGIIK_15885	0.60	-0.2
3,468,627	-		OKGIIK_15885	0.60	-0.3
3,468,627	-		OKGIIK_15885	0.60	-0.5
3,468,692	+		OKGIIK_15885	0.74	-1.8
3,468,692	+		OKGIIK_15885	0.74	+0.0
3,468,692	+		OKGIIK_15885	0.74	-1.2
3,468,692	+		OKGIIK_15885	0.74	-2.2
3,468,692	+		OKGIIK_15885	0.74	-0.8
3,468,693	-		OKGIIK_15885	0.75	-0.2
3,468,693	-		OKGIIK_15885	0.75	+0.4
3,468,693	-		OKGIIK_15885	0.75	+0.2
3,468,693	-		OKGIIK_15885	0.75	-0.3
3,468,713	+		OKGIIK_15885	0.79	+0.5
3,468,738	+		OKGIIK_15885	0.84	-0.5
3,468,738	+		OKGIIK_15885	0.84	-0.3
3,468,771	+				+1.2
3,468,799	+				-0.2
3,468,799	+				-0.8
3,468,870	+				-0.8
3,468,870	+				+0.4
3,468,870	+				-0.7
3,468,870	+				-1.0
3,468,871	-				-0.4
3,468,871	-				-2.3
3,468,871	-				+0.6
3,468,871	-				+0.7
3,468,879	+				+1.2
3,468,880	-				+0.2
3,468,880	-				+0.6
3,468,880	-				+1.2
3,468,894	+		OKGIIK_15890	0.13	+0.1
3,468,894	+		OKGIIK_15890	0.13	-0.5
3,468,894	+		OKGIIK_15890	0.13	+0.7
3,468,895	-		OKGIIK_15890	0.13	-0.8
3,468,895	-		OKGIIK_15890	0.13	+1.8
3,468,895	-		OKGIIK_15890	0.13	-0.1
3,468,900	+		OKGIIK_15890	0.14	-1.0
3,468,901	-		OKGIIK_15890	0.14	+0.2
3,468,901	-		OKGIIK_15890	0.14	+0.5
3,468,981	+		OKGIIK_15890	0.29	+0.2
3,468,981	+		OKGIIK_15890	0.29	-0.8
3,468,981	+		OKGIIK_15890	0.29	+1.2
3,468,981	+		OKGIIK_15890	0.29	-1.5
3,468,981	+		OKGIIK_15890	0.29	-0.0
3,468,981	+		OKGIIK_15890	0.29	-0.3
3,468,982	-		OKGIIK_15890	0.29	-0.1
3,468,982	-		OKGIIK_15890	0.29	+0.9
3,468,982	-		OKGIIK_15890	0.29	-1.7
3,468,982	-		OKGIIK_15890	0.29	-0.3
3,468,982	-		OKGIIK_15890	0.29	-0.3
3,468,987	+		OKGIIK_15890	0.30	-0.4
3,468,987	+		OKGIIK_15890	0.30	+0.7
3,469,071	+		OKGIIK_15890	0.46	-0.2
3,469,071	+		OKGIIK_15890	0.46	-1.2
3,469,071	+		OKGIIK_15890	0.46	-0.3
3,469,071	+		OKGIIK_15890	0.46	-0.4
3,469,071	+		OKGIIK_15890	0.46	-1.7
3,469,071	+		OKGIIK_15890	0.46	-1.4
3,469,071	+		OKGIIK_15890	0.46	+1.5
3,469,072	-		OKGIIK_15890	0.46	+0.5
3,469,072	-		OKGIIK_15890	0.46	-1.7
3,469,072	-		OKGIIK_15890	0.46	-1.1
3,469,072	-		OKGIIK_15890	0.46	-2.1
3,469,129	-		OKGIIK_15890	0.57	-0.2
3,469,162	-		OKGIIK_15890	0.64	-1.2
3,469,519	+		OKGIIK_15895	0.25	-0.9
3,469,520	-		OKGIIK_15895	0.25	-1.3
3,469,665	+		OKGIIK_15895	0.52	-0.3
3,469,665	+		OKGIIK_15895	0.52	-0.8
3,469,665	+		OKGIIK_15895	0.52	-1.3
3,469,666	-		OKGIIK_15895	0.52	-1.8
3,469,666	-		OKGIIK_15895	0.52	+0.8
3,469,666	-		OKGIIK_15895	0.52	-0.7
3,469,666	-		OKGIIK_15895	0.52	-0.0
3,469,737	+		OKGIIK_15895	0.66	+0.7
3,469,738	-		OKGIIK_15895	0.66	+0.9
3,469,738	-		OKGIIK_15895	0.66	+0.9
3,469,738	-		OKGIIK_15895	0.66	-0.7
3,469,787	+		OKGIIK_15895	0.75	+0.0
3,469,787	+		OKGIIK_15895	0.75	-0.4
3,469,794	+		OKGIIK_15895	0.76	+0.2
3,469,794	+		OKGIIK_15895	0.76	+0.8
3,469,794	+		OKGIIK_15895	0.76	-0.2
3,469,795	-		OKGIIK_15895	0.76	-1.4
3,469,795	-		OKGIIK_15895	0.76	-0.8
3,469,969	-				-0.8
3,470,089	+				-0.7
3,470,121	+				-0.2
3,470,121	+				-0.5
3,470,121	+				-0.8
3,470,121	+				-0.6
3,470,121	+				-1.5
3,470,121	+				-1.2
3,470,121	+				-1.2
3,470,122	-				-1.5
3,470,122	-				-2.2
3,470,122	-				+0.1
3,470,122	-				-0.2
3,470,122	-				-0.3
3,470,145	-				-1.2
3,470,145	-				+0.2
3,470,348	+				-1.2
3,470,348	+				+0.7
3,470,348	+				-1.2
3,470,348	+				+1.0
3,470,348	+				-0.2
3,470,348	+				-1.7
3,470,348	+				-0.8
3,470,348	+				-0.6
3,470,348	+				-2.7
3,470,348	+				-0.3
3,470,348	+				+0.4
3,470,348	+				+0.4
3,470,349	-				-0.7
3,470,349	-				-1.3
3,470,349	-				+0.0
3,470,349	-				-0.2
3,470,349	-				-3.2
3,470,349	-				+1.2
3,470,349	-				+0.3