Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13530

Experiment: R2A_PIPES pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.5
2,930,198	-	ubiA	OKGIIK_13520	0.72	-0.5
2,930,293	+	ubiA	OKGIIK_13520	0.83	-0.6
2,930,293	+	ubiA	OKGIIK_13520	0.83	-0.0
2,930,294	-	ubiA	OKGIIK_13520	0.83	+0.2
2,930,294	-	ubiA	OKGIIK_13520	0.83	-0.7
2,930,294	-	ubiA	OKGIIK_13520	0.83	+0.3
2,930,294	-	ubiA	OKGIIK_13520	0.83	-0.4
2,930,294	-	ubiA	OKGIIK_13520	0.83	+0.1
2,930,294	-	ubiA	OKGIIK_13520	0.83	-1.7
2,930,294	-	ubiA	OKGIIK_13520	0.83	+0.5
2,930,303	+	ubiA	OKGIIK_13520	0.84	-2.6
2,930,303	+	ubiA	OKGIIK_13520	0.84	-0.4
2,930,304	-	ubiA	OKGIIK_13520	0.84	-2.1
2,930,304	-	ubiA	OKGIIK_13520	0.84	-0.4
2,930,304	-	ubiA	OKGIIK_13520	0.84	-1.7
2,930,304	-	ubiA	OKGIIK_13520	0.84	-2.9
2,930,304	-	ubiA	OKGIIK_13520	0.84	+0.1
2,930,304	-	ubiA	OKGIIK_13520	0.84	-1.7
2,930,305	+	ubiA	OKGIIK_13520	0.84	+0.8
2,930,305	+	ubiA	OKGIIK_13520	0.84	-1.0
2,930,305	+	ubiA	OKGIIK_13520	0.84	-1.0
2,930,306	-	ubiA	OKGIIK_13520	0.84	-1.2
2,930,482	+				-2.0
2,930,482	+				-0.6
2,930,482	+				+0.1
2,930,482	+				-1.5
2,930,482	+				+0.9
2,930,482	+				+0.3
2,930,482	+				-0.3
2,930,482	+				-1.0
2,930,482	+				-0.1
2,930,482	+				-0.3
2,930,482	+				+0.9
2,930,482	+				-2.1
2,930,482	+				-0.8
2,930,482	+				-0.3
2,930,482	+				-0.6
2,930,482	+				-0.6
2,930,483	-				-1.0
2,930,483	-				-0.6
2,930,483	-				+0.1
2,930,483	-				-0.5
2,930,483	-				-1.1
2,930,483	-				-0.6
2,930,483	-				-1.1
2,930,483	-				-1.3
2,930,483	-				-1.1
2,930,483	-				-0.5
2,930,483	-				-0.1
2,930,483	-				-1.5
2,930,483	-				-0.5
2,930,483	-				+0.4
2,930,483	-				-0.1
2,930,536	+	ubiG	OKGIIK_13525	0.12	-0.9
2,930,536	+	ubiG	OKGIIK_13525	0.12	+0.2
2,930,536	+	ubiG	OKGIIK_13525	0.12	-1.1
2,930,536	+	ubiG	OKGIIK_13525	0.12	-0.6
2,930,536	+	ubiG	OKGIIK_13525	0.12	-1.1
2,930,536	+	ubiG	OKGIIK_13525	0.12	-0.7
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.3
2,930,537	-	ubiG	OKGIIK_13525	0.12	+1.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	+1.9
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.5
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.9
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.0
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.3
2,930,620	+	ubiG	OKGIIK_13525	0.23	-0.0
2,930,620	+	ubiG	OKGIIK_13525	0.23	-1.9
2,930,621	-	ubiG	OKGIIK_13525	0.23	-0.7
2,930,621	-	ubiG	OKGIIK_13525	0.23	-1.0
2,930,656	+	ubiG	OKGIIK_13525	0.28	-2.3
2,930,656	+	ubiG	OKGIIK_13525	0.28	-1.0
2,930,656	+	ubiG	OKGIIK_13525	0.28	+1.4
2,930,656	+	ubiG	OKGIIK_13525	0.28	+0.2
2,930,657	-	ubiG	OKGIIK_13525	0.29	-1.3
2,930,657	-	ubiG	OKGIIK_13525	0.29	-0.7
2,930,657	-	ubiG	OKGIIK_13525	0.29	-1.3
2,930,657	-	ubiG	OKGIIK_13525	0.29	-2.6
2,930,657	-	ubiG	OKGIIK_13525	0.29	+0.4
2,930,657	-	ubiG	OKGIIK_13525	0.29	-0.1
2,930,853	+	ubiG	OKGIIK_13525	0.56	-0.1
2,930,853	+	ubiG	OKGIIK_13525	0.56	-0.6
2,930,853	+	ubiG	OKGIIK_13525	0.56	+0.0
2,930,854	-	ubiG	OKGIIK_13525	0.56	-0.1
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.6
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.5
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.1
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.7
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.1
2,930,854	-	ubiG	OKGIIK_13525	0.56	-0.1
2,930,857	+	ubiG	OKGIIK_13525	0.57	-1.6
2,930,863	+	ubiG	OKGIIK_13525	0.58	-1.5
2,930,864	-	ubiG	OKGIIK_13525	0.58	-2.3
2,931,506	+		OKGIIK_13530	0.32	-2.0
2,931,507	-		OKGIIK_13530	0.32	-1.9
2,931,507	-		OKGIIK_13530	0.32	-0.2
2,931,863	+		OKGIIK_13530	0.63	-0.8
2,931,863	+		OKGIIK_13530	0.63	-3.0
2,931,864	-		OKGIIK_13530	0.63	+0.6
2,931,911	+		OKGIIK_13530	0.67	-0.4
2,932,100	+		OKGIIK_13530	0.83	-1.2
2,932,100	+		OKGIIK_13530	0.83	-0.5
2,932,100	+		OKGIIK_13530	0.83	-2.2
2,932,101	-		OKGIIK_13530	0.83	-2.0
2,932,101	-		OKGIIK_13530	0.83	-1.2
2,932,101	-		OKGIIK_13530	0.83	-0.3
2,932,101	-		OKGIIK_13530	0.83	-2.7
2,932,238	+				+0.2
2,932,238	+				-0.2
2,932,238	+				-0.2
2,932,238	+				-2.0
2,932,238	+				-0.8
2,932,238	+				-1.7
2,932,239	-				-0.3
2,932,399	+	luxS	OKGIIK_13535	0.23	+0.3
2,932,399	+	luxS	OKGIIK_13535	0.23	-0.5
2,932,399	+	luxS	OKGIIK_13535	0.23	+0.5
2,932,399	+	luxS	OKGIIK_13535	0.23	-0.4
2,932,400	-	luxS	OKGIIK_13535	0.23	-0.3
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.4
2,932,492	+	luxS	OKGIIK_13535	0.42	+1.4
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.4
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.6
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.2
2,932,492	+	luxS	OKGIIK_13535	0.42	-1.7
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.8
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.9
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.2
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.1
2,932,492	+	luxS	OKGIIK_13535	0.42	-1.2
2,932,493	-	luxS	OKGIIK_13535	0.42	-0.9
2,932,493	-	luxS	OKGIIK_13535	0.42	-2.2
2,932,493	-	luxS	OKGIIK_13535	0.42	-0.3
2,932,493	-	luxS	OKGIIK_13535	0.42	-0.2
2,932,648	+	luxS	OKGIIK_13535	0.74	+0.2
2,932,648	+	luxS	OKGIIK_13535	0.74	+0.0
2,932,649	-	luxS	OKGIIK_13535	0.74	-0.2
2,932,649	-	luxS	OKGIIK_13535	0.74	-0.6
2,932,649	-	luxS	OKGIIK_13535	0.74	-2.3
2,932,649	-	luxS	OKGIIK_13535	0.74	-1.2
2,932,649	-	luxS	OKGIIK_13535	0.74	+1.3
2,932,649	-	luxS	OKGIIK_13535	0.74	+0.6
2,932,737	-				-1.2
2,932,790	-				-1.2
2,932,836	+				-1.2
2,932,836	+				+0.1
2,932,836	+				-0.7
2,932,836	+				-1.2
2,932,837	-				-0.6
2,932,837	-				-1.2
2,932,837	-				-1.2
2,932,878	+				+0.2
2,932,878	+				-1.2
2,932,878	+				+0.1
2,932,878	+				-1.2
2,932,879	-				-1.5
2,932,879	-				-0.7
2,932,879	-				-0.2
2,933,109	+	ycjR	OKGIIK_13540	0.25	-0.4
2,933,109	+	ycjR	OKGIIK_13540	0.25	-0.2
2,933,109	+	ycjR	OKGIIK_13540	0.25	+0.3
2,933,109	+	ycjR	OKGIIK_13540	0.25	-2.6
2,933,109	+	ycjR	OKGIIK_13540	0.25	-2.5
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.2
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.0
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.4
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.2
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.6
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.7
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.4
2,933,110	-	ycjR	OKGIIK_13540	0.25	-2.0
2,933,110	-	ycjR	OKGIIK_13540	0.25	-2.5
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.2
2,933,110	-	ycjR	OKGIIK_13540	0.25	-2.7
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.9
2,933,148	+	ycjR	OKGIIK_13540	0.28	-1.7
2,933,148	+	ycjR	OKGIIK_13540	0.28	-0.7
2,933,148	+	ycjR	OKGIIK_13540	0.28	-1.0
2,933,149	-	ycjR	OKGIIK_13540	0.28	-2.0
2,933,149	-	ycjR	OKGIIK_13540	0.28	-1.0
2,933,149	-	ycjR	OKGIIK_13540	0.28	-0.3
2,933,149	-	ycjR	OKGIIK_13540	0.28	-0.7
2,933,256	+	ycjR	OKGIIK_13540	0.37	-1.5
2,933,257	-	ycjR	OKGIIK_13540	0.37	-1.2
2,933,257	-	ycjR	OKGIIK_13540	0.37	-0.2
2,933,286	+	ycjR	OKGIIK_13540	0.39	-1.2
2,933,286	+	ycjR	OKGIIK_13540	0.39	+0.7
2,933,286	+	ycjR	OKGIIK_13540	0.39	-0.7
2,933,287	-	ycjR	OKGIIK_13540	0.39	-2.2
2,933,287	-	ycjR	OKGIIK_13540	0.39	-2.2
2,933,287	-	ycjR	OKGIIK_13540	0.39	-1.7
2,933,287	-	ycjR	OKGIIK_13540	0.39	+0.0